CcUC05G101030 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G101030
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	TRASH domain-containing protein
Location	CicolChr05: 29269176 .. 29270874 (-)
RNA-Seq Expression	CcUC05G101030
Synteny	CcUC05G101030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAACGAAAATGTAAAACGCAAGAGAGAGAAGACTGTTTGACTTACTCGTTGTAAACCCTATTTCTCATAAGCTATCCCCCTTCCCCCCTTACCAGCCACTGCATCCCGCCCCGGCGCTCGAGGCTCCTACTCGACACCGTCTCAGCGGCTGCCGGTGCTCCGTGGACTCTCAGCCTTCCGACGAAAGCACCGCCGGTCGCTCCTTCTTACACTCTCTCGCCTCTCCGAGTTATCAGAGTTGCCTAACTTAGTGGTTCAGCCCCTAGCGCCGTTCGTTAGGGTACCCAAGGTATTATTTTCTTATTTTGTTGGGTTATGTTGGTTTATTTTCTTCACCCACGGAGAAGAAACCGTTTGTTTTCTTTATTGGCTTTCTTCTTCATACTAGTTTTAATGAAAACATAAAACTAAGAATGGATACCTCACAAATTAGAATAATAAGTAGATTGAATTAATAAATAAAAATTAACAGAAATACATTGTTACTAGAGATTTTTCTCTGTTCCAGTCGTTCTTCTGAACGTATAAGCTACAGTTTATTTGATTTTCTTTCGTCCGTGGCCTTTTGTTGCAGGAAATCTAGGCTTTGTTATTTGCTAAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCTTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAAAGGTAAGGGCGTAGGTTGCGAACTTTCATGATTTGTTCTTCTCATTGCTTGTATGTATTGGCTTGCGGTAAATGTCTCTTATGGTTGCCAATCTCATCTGATGCTTACGGATTGACGAGACTACATTGTTCTGTTTGTGATGCATGTTAGGCTGTAGAAATATATAATTGTTCTTGCTGGGCTTTTAAATTAGTAATGGTGGGCGGGGTTCCCGTGTCCTATTTTCTGATATGATTCTTTCTGCAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAACCCCCGTAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGTAGTCTTTCTTCATTTATTTGTGGAGCAAATGGATTTTGCAAGTACAAATTTTCTGTTGTATTTGTCTCCTCAATTCTTGTTGCATTTGTCTTATCTAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACTGAAGAGACATTGAAGGCTATTAAGAAGATCGATAAAGTCAGAGCAGATAGGGAGTCAAGACATATTGCTCGCAGGTTAAAAATTTCTTCCGTTTCCATTTGTTGTATACCGATATATTTTTTGAATAATGCTTCAGTTGTAACTCGGGATCATTCACATTTGCAGACACCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAAGATCCTTCGCTCACTCTTCCAAAGATCAAAGTCAAGGTGGCACCATCAGAAGCAGAGCAAAATCAGCGTATGGAAGAATGAGTTTGTTAATCTTATATCAATATATCAAATATTTACGTCGTAATTACTTTTTCACATATCTAGAACTGCCACAATTCTTGTGCAGTGGTAGATTATCTTTGTCTGTCCTTACGCAAGCATGGTTGTCCTATAGAATTTCATTATGA

mRNA sequence

GGAAAACGAAAATGTAAAACGCAAGAGAGAGAAGACTGTTTGACTTACTCGTTGTAAACCCTATTTCTCATAAGCTATCCCCCTTCCCCCCTTACCAGCCACTGCATCCCGCCCCGGCGCTCGAGGCTCCTACTCGACACCGTCTCAGCGGCTGCCGGTGCTCCGTGGACTCTCAGCCTTCCGACGAAAGCACCGCCGGTCGCTCCTTCTTACACTCTCTCGCCTCTCCGAGTTATCAGAGTTGCCTAACTTAGTGGTTCAGCCCCTAGCGCCGTTCGTTAGGGTACCCAAGGAAATCTAGGCTTTGTTATTTGCTAAAGAAAAGAATGAGGTTAGAGAAGTGTTGGTTCTGTTCTTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAACCCCCGTAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACTGAAGAGACATTGAAGGCTATTAAGAAGATCGATAAAGTCAGAGCAGATAGGGAGTCAAGACATATTGCTCGCAGACACCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAAGATCCTTCGCTCACTCTTCCAAAGATCAAAGTCAAGGTGGCACCATCAGAAGCAGAGCAAAATCAGCGTATGGAAGAATGAGTTTGTTAATCTTATATCAATATATCAAATATTTACGTCGTAATTACTTTTTCACATATCTAGAACTGCCACAATTCTTGTGCAGTGGTAGATTATCTTTGTCTGTCCTTACGCAAGCATGGTTGTCCTATAGAATTTCATTATGA

Coding sequence (CDS)

ATGAGGTTAGAGAAGTGTTGGTTCTGTTCTTCCACTATATATCCAGGACATGGTATTCAGTTTGTTCGCAATGATGCAAAGATTTTTAGATTTTGTCGGTCAAAATGCCACAAGAACTTCAAGATGAAGAGAAACCCCCGTAAAGTAAAATGGACTAAGGCATATAGGAGGTTGCATGGAAAGGATATGACACAGGACTCAACTTTTGAGTTTGAGAGGAAGCGCAATAGGCCGGAGAGATATGACAGGAATCTCACTGAAGAGACATTGAAGGCTATTAAGAAGATCGATAAAGTCAGAGCAGATAGGGAGTCAAGACATATTGCTCGCAGACACCAAGGAAAGAAAGCAAAGGAACTCAGAGAGGCACAGAAGGAATTGGATCAAAGCATCAGTTTGGTCAAAGCACCTTCTGCTCTCAAGGAAGATCCTTCGCTCACTCTTCCAAAGATCAAAGTCAAGGTGGCACCATCAGAAGCAGAGCAAAATCAGCGTATGGAAGAATGA

Protein sequence

MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHGKDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKELREAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE

Homology

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BLAST of CcUC05G101030 vs. NCBI nr
Match: XP_038905540.1 (probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 8.8e-84
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 29  MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 88

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRA+RESRHIARRHQGKKAKEL
Sbjct: 89  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRANRESRHIARRHQGKKAKEL 148

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
            EAQKELDQSISLVKAPSALKEDPSLTLPKIKVKV PS+AEQNQRMEE
Sbjct: 149 GEAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVVPSQAEQNQRMEE 196

[Close]

BLAST of CcUC05G101030 vs. NCBI nr
Match: XP_038905541.1 (probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905542.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905544.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_038905545.1 probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida])

HSP 1 Score: 320.5 bits (820), Expect = 8.8e-84
Identity = 163/168 (97.02%), Postives = 165/168 (98.21%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRA+RESRHIARRHQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRANRESRHIARRHQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
            EAQKELDQSISLVKAPSALKEDPSLTLPKIKVKV PS+AEQNQRMEE
Sbjct: 121 GEAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVVPSQAEQNQRMEE 168

[Close]

BLAST of CcUC05G101030 vs. NCBI nr
Match: XP_038903115.1 (probable ribosome biogenesis protein RLP24 [Benincasa hispida])

HSP 1 Score: 318.9 bits (816), Expect = 2.6e-83
Identity = 161/168 (95.83%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDA IFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDATIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETLKAI+KIDKVRADRESRHIARRHQGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIRKIDKVRADRESRHIARRHQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
            EAQKELDQSISLVKAPSALKEDPSLTLPKIK+KV PS+AEQ QRMEE
Sbjct: 121 SEAQKELDQSISLVKAPSALKEDPSLTLPKIKIKVVPSQAEQTQRMEE 168

[Close]

BLAST of CcUC05G101030 vs. NCBI nr
Match: XP_022976358.1 (probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 probable ribosome biogenesis protein RLP24 [Cucurbita maxima])

HSP 1 Score: 312.4 bits (799), Expect = 2.4e-81
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRA+RESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
           REA+KELDQSISLVKAP ALKEDPSLTLPKIKV V PS+AEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]

BLAST of CcUC05G101030 vs. NCBI nr
Match: XP_022135604.1 (probable ribosome biogenesis protein RLP24 [Momordica charantia])

HSP 1 Score: 310.5 bits (794), Expect = 9.1e-81
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRADRESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
           +EA+KELDQSISLVKAPS LKEDPSLTLPKIKVKVA S+AEQNQ MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

[Close]

BLAST of CcUC05G101030 vs. ExPASy Swiss-Prot
Match: O22165 (Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At2g44860 PE=1 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 6.0e-59
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R +  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
            +  KELDQ+I +V+AP A          KIKV V+  ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CcUC05G101030 vs. ExPASy Swiss-Prot
Match: Q86B05 (Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 GN=rlp24 PE=2 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 79/142 (55.63%), Postives = 108/142 (76.06%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  +YPGHG+ FVRND K FRFCRSKCHKNFK+KRNPRK +WTKA+R+L+G
Sbjct: 1   MRIEKCYFCSGPVYPGHGVMFVRNDCKQFRFCRSKCHKNFKLKRNPRKTRWTKAFRKLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K+MT D T EFE+KRNRP +YDR L   T+ A+ ++ K++  RE      R +G K  + 
Sbjct: 61  KEMTVDKTLEFEKKRNRPVKYDRELINNTIIAMARVQKIKERREKTFYKNRMEGVKGMQK 120

Query: 121 REAQKELDQSISLVKAPSALKE 143
           ++  KE++Q++SL++ PSAL +
Sbjct: 121 KQKLKEINQNLSLIRGPSALNK 142

[Close]

BLAST of CcUC05G101030 vs. ExPASy Swiss-Prot
Match: Q3SZ12 (Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-39
Identity = 79/143 (55.24%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAQ--KELDQSISLVKAPSALK 142
           ++ Q  KE+ Q+I L++AP A K
Sbjct: 121 QKVQDVKEVKQNIHLIRAPLAGK 141

[Close]

BLAST of CcUC05G101030 vs. ExPASy Swiss-Prot
Match: Q99L28 (Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.4e-39
Identity = 79/143 (55.24%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPVKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAQ--KELDQSISLVKAPSALK 142
           ++ Q  KE+ Q+I L++AP A K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]

BLAST of CcUC05G101030 vs. ExPASy Swiss-Prot
Match: Q9UHA3 (Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.8e-39
Identity = 79/143 (55.24%), Postives = 112/143 (78.32%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MR+EKC+FCS  IYPGHG+ FVRND K+FRFC+SKCHKNFK KRNPRKV+WTKA+R+  G
Sbjct: 1   MRIEKCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKAAG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           K++T D++FEFE++RN P +Y R L  +T+ A+K++++++  R+++ I  R   KK KEL
Sbjct: 61  KELTVDNSFEFEKRRNEPIKYQRELWNKTIDAMKRVEEIKQKRQAKFIMNRL--KKNKEL 120

Query: 121 REAQ--KELDQSISLVKAPSALK 142
           ++ Q  KE+ Q+I L++AP A K
Sbjct: 121 QKVQDIKEVKQNIHLIRAPLAGK 141

[Close]

BLAST of CcUC05G101030 vs. ExPASy TrEMBL
Match: A0A6J1ILW2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111476784 PE=3 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 1.2e-81
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRA+RESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
           REA+KELDQSISLVKAP ALKEDPSLTLPKIKV V PS+AEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLTLPKIKVSVEPSQAEQNQSMEE 168

[Close]

BLAST of CcUC05G101030 vs. ExPASy TrEMBL
Match: A0A6J1C1W9 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111007521 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.4e-81
Identity = 158/168 (94.05%), Postives = 164/168 (97.62%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIF+FCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFKFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRADRESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
           +EA+KELDQSISLVKAPS LKEDPSLTLPKIKVKVA S+AEQNQ MEE
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEE 168

[Close]

BLAST of CcUC05G101030 vs. ExPASy TrEMBL
Match: A0A6J1D3M8 (probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC111017299 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.3e-80
Identity = 157/168 (93.45%), Postives = 163/168 (97.02%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRL+G
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLNG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRADRESRHIARR QGKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRADRESRHIARRMQGKKGKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
           +EA+KELDQSISLVKAPS LKEDPSLTLPKIKVKVA S+AEQNQ ME+
Sbjct: 121 KEARKELDQSISLVKAPSVLKEDPSLTLPKIKVKVAQSQAEQNQAMEQ 168

[Close]

BLAST of CcUC05G101030 vs. ExPASy TrEMBL
Match: A0A6J1F7I9 (probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC111443073 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.1e-79
Identity = 155/168 (92.26%), Postives = 160/168 (95.24%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRND KIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDTKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPER DRNLTEETL+AIKKIDKVRA+RESRHIARR QGKKAKEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERCDRNLTEETLRAIKKIDKVRAERESRHIARRMQGKKAKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
           REA+KELDQSISLVKAP ALKEDPSL LPKIK+ V PS+AEQNQ MEE
Sbjct: 121 REAKKELDQSISLVKAPLALKEDPSLILPKIKLNVEPSQAEQNQSMEE 168

[Close]

BLAST of CcUC05G101030 vs. ExPASy TrEMBL
Match: A0A6J1KWV2 (probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111498315 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 1.3e-77
Identity = 149/168 (88.69%), Postives = 162/168 (96.43%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSST+YPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG
Sbjct: 1   MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMTQDSTFEFERKRNRPERYDRNLTEETL+AIKKIDKVRA+RE+RHIARR +GKK KEL
Sbjct: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLRAIKKIDKVRAEREARHIARRMKGKKGKEL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
           +EA+KEL+QSIS+VK P+ LKEDPSLTLPKI+VKVA S+AE+NQ MEE
Sbjct: 121 KEARKELEQSISMVKPPALLKEDPSLTLPKIQVKVAQSQAEKNQPMEE 168

[Close]

BLAST of CcUC05G101030 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 228.4 bits (581), Expect = 4.2e-60
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R +  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
            +  KELDQ+I +V+AP A          KIKV V+  ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CcUC05G101030 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 228.4 bits (581), Expect = 4.2e-60
Identity = 117/168 (69.64%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKA+R  HG
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADRESRHIARRHQGKKAKEL 120
           KDMT+D+TFEFE+KRNRPERYDRN+TE TL AIKKI K+R  RE++HI  R +  K K+L
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENRLKPNKQKKL 120

Query: 121 REAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAEQNQRMEE 169
            +  KELDQ+I +V+AP A          KIKV V+  ++ QN+ MEE
Sbjct: 121 NDDMKELDQNIHMVQAPGA---------QKIKVDVSEKKSVQNEAMEE 159

[Close]

BLAST of CcUC05G101030 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 75.1 bits (183), Expect = 6.0e-14
Identity = 51/152 (33.55%), Postives = 76/152 (50.00%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAI--KKIDKVRADRESRHIARRH------ 120
           KD  Q++     R   +P  Y R++   TL+ I  K+ +K      +R  A R       
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 122

Query: 121 ---QGKKAKELREAQKELDQSISLVKAPSALK 142
                KKAK++  A K+     +  KA +A K
Sbjct: 123 KTKDEKKAKKVEFASKQQKVKANFPKAAAASK 152

[Close]

BLAST of CcUC05G101030 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 73.2 bits (178), Expect = 2.3e-13
Identity = 54/162 (33.33%), Postives = 80/162 (49.38%), Query Frame = 0


Query: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRRLHG 60
           ++ E C F    IYPG GI+F+R+D+++F F  SKC + F  K  P K+ WT  YR+ H 
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 61  KDMTQDSTFEFERKRNRPERYDRNLTEETLKAIKKIDKVRADR-ESRHIARRHQGKKAKE 120
           KD  Q++     R   +P  Y R++   TL+ I+   K RA++ E R  AR       +E
Sbjct: 63  KDAAQEAVKRRRRATKKP--YSRSIVGATLEVIQ---KKRAEKPEVRDAARE---AALRE 122

Query: 121 LREAQKELDQSISLVKAPSALKEDPSLTLPKIKVKVAPSEAE 162
           ++E  K+        K   A K+  S     I    AP  A+
Sbjct: 123 IKERIKKTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAK 156

The following BLAST results are available for this feature:

BLAST of CcUC05G101030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905540.1	8.8e-84	97.02	probable ribosome biogenesis protein RLP24 isoform X1 [Benincasa hispida]	[more]
XP_038905541.1	8.8e-84	97.02	probable ribosome biogenesis protein RLP24 isoform X2 [Benincasa hispida] >XP_03...	[more]
XP_038903115.1	2.6e-83	95.83	probable ribosome biogenesis protein RLP24 [Benincasa hispida]	[more]
XP_022976358.1	2.4e-81	94.64	probable ribosome biogenesis protein RLP24 [Cucurbita maxima] >XP_022976359.1 pr...	[more]
XP_022135604.1	9.1e-81	94.05	probable ribosome biogenesis protein RLP24 [Momordica charantia]	[more]

BLAST of CcUC05G101030 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22165	6.0e-59	69.64	Probable ribosome biogenesis protein RLP24 OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
Q86B05	1.3e-42	55.63	Probable ribosome biogenesis protein RLP24 OS=Dictyostelium discoideum OX=44689 ...	[more]
Q3SZ12	1.4e-39	55.24	Probable ribosome biogenesis protein RLP24 OS=Bos taurus OX=9913 GN=RSL24D1 PE=2...	[more]
Q99L28	1.4e-39	55.24	Probable ribosome biogenesis protein RLP24 OS=Mus musculus OX=10090 GN=Rsl24d1 P...	[more]
Q9UHA3	1.8e-39	55.24	Probable ribosome biogenesis protein RLP24 OS=Homo sapiens OX=9606 GN=RSL24D1 PE...	[more]

BLAST of CcUC05G101030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1ILW2	1.2e-81	94.64	probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1C1W9	4.4e-81	94.05	probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1D3M8	1.3e-80	93.45	probable ribosome biogenesis protein RLP24 OS=Momordica charantia OX=3673 GN=LOC...	[more]
A0A6J1F7I9	4.1e-79	92.26	probable ribosome biogenesis protein RLP24 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1KWV2	1.3e-77	88.69	probable ribosome biogenesis protein RLP24 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]

BLAST of CcUC05G101030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G44860.1	4.2e-60	69.64	Ribosomal protein L24e family protein	[more]
AT2G44860.2	4.2e-60	69.64	Ribosomal protein L24e family protein	[more]
AT3G53020.1	6.0e-14	33.55	Ribosomal protein L24e family protein	[more]
AT2G36620.1	2.3e-13	33.33	ribosomal protein L24	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 6..44 e-value: 2.6E-12 score: 56.9
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 1..68 e-value: 2.9E-35 score: 122.1
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 1..65 e-value: 2.1E-34 score: 117.6
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..168
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 1..54 e-value: 6.65422E-31 score: 104.191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 103..123
None	No IPR available	PANTHER	PTHR10792:SF36	BNAA04G10330D PROTEIN	coord: 1..168
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 4..56
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 8..25

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G101030.1	CcUC05G101030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042273	ribosomal large subunit biogenesis
cellular_component	GO:0005730	nucleolus