CcUC05G100560 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G100560
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 28831325 .. 28831570 (+)
RNA-Seq ExpressionCcUC05G100560
SyntenyCcUC05G100560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGCAGCCACACTGACCTCAGTTGTTCTTCGCTATATATTCTTTGGTGTAATTTTGTTTACTATAACAACAGTGATATCTGAAACCGTTGTACCTTTGACAACTTATGGCAACTATGAATCTCAAGCGAAGGGAGATGATGGTCGCTTGAAGGTCGAGTCAGCAGAAATTGTTGCAGACTACGGCTACTGGAATCCAAACCCCATGTTTGGGGGAGGAAAAGCAGGCCCCATTCACCATTAA

mRNA sequence

ATGGCAGCAGCCACACTGACCTCAGTTGTTCTTCGCTATATATTCTTTGGTGTAATTTTGTTTACTATAACAACAGTGATATCTGAAACCGTTGTACCTTTGACAACTTATGGCAACTATGAATCTCAAGCGAAGGGAGATGATGGTCGCTTGAAGGTCGAGTCAGCAGAAATTGTTGCAGACTACGGCTACTGGAATCCAAACCCCATGTTTGGGGGAGGAAAAGCAGGCCCCATTCACCATTAA

Coding sequence (CDS)

ATGGCAGCAGCCACACTGACCTCAGTTGTTCTTCGCTATATATTCTTTGGTGTAATTTTGTTTACTATAACAACAGTGATATCTGAAACCGTTGTACCTTTGACAACTTATGGCAACTATGAATCTCAAGCGAAGGGAGATGATGGTCGCTTGAAGGTCGAGTCAGCAGAAATTGTTGCAGACTACGGCTACTGGAATCCAAACCCCATGTTTGGGGGAGGAAAAGCAGGCCCCATTCACCATTAA

Protein sequence

MAAATLTSVVLRYIFFGVILFTITTVISETVVPLTTYGNYESQAKGDDGRLKVESAEIVADYGYWNPNPMFGGGKAGPIHH
Homology
BLAST of CcUC05G100560 vs. NCBI nr
Match: KAG6608573.1 (hypothetical protein SDJN03_01915, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 49/93 (52.69%), Postives = 57/93 (61.29%), Query Frame = 0

Query: 1  MAAATLTSVVLRYIFFGVILFTITTVISETVV------PL------TTYGNYESQAKGDD 60
          MA  TL S  L  +FFGV+ FTI T +S+T        PL      T +G +ES+ KGD 
Sbjct: 1  MAGVTLAS-FLYSLFFGVMTFTIITALSKTAAGSRLLSPLSAAPSTTPHGIHESEVKGDH 60

Query: 61 GRLKVESAEIVADYGYWNPNPMFGGGKAGPIHH 82
           R KV S EIVADYGYWNP P+FGGG A PI H
Sbjct: 61 SRFKVLS-EIVADYGYWNPTPVFGGGYADPIPH 91

BLAST of CcUC05G100560 vs. NCBI nr
Match: KGN55706.1 (hypothetical protein Csa_010844 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 1.8e-10
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 19 ILFTITTVISETVVPLTTYGNYESQAKGDDGRLKVESAEIVADYGYWNPNPMFGGGKAGP 78
          ++FTI T IS T  P +TYGNYE Q KGDDG LK + +EIV DY  W+PNP+FGGG+AG 
Sbjct: 1  MMFTIITTISVTNAP-STYGNYEYQVKGDDGHLK-DDSEIVTDYVDWSPNPIFGGGRAGL 60

Query: 79 IHH 82
          I H
Sbjct: 61 IPH 61

BLAST of CcUC05G100560 vs. ExPASy TrEMBL
Match: A0A0A0L6C3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006675 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 8.8e-11
Identity = 39/63 (61.90%), Postives = 47/63 (74.60%), Query Frame = 0

Query: 19 ILFTITTVISETVVPLTTYGNYESQAKGDDGRLKVESAEIVADYGYWNPNPMFGGGKAGP 78
          ++FTI T IS T  P +TYGNYE Q KGDDG LK + +EIV DY  W+PNP+FGGG+AG 
Sbjct: 1  MMFTIITTISVTNAP-STYGNYEYQVKGDDGHLK-DDSEIVTDYVDWSPNPIFGGGRAGL 60

Query: 79 IHH 82
          I H
Sbjct: 61 IPH 61

BLAST of CcUC05G100560 vs. TAIR 10
Match: AT1G28375.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 8 Blast hits to 8 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 8; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 41.2 bits (95), Expect = 4.6e-04
Identity = 23/70 (32.86%), Postives = 38/70 (54.29%), Query Frame = 0

Query: 18 VILFTITTVISETVVPLTTYGNYESQAKGDDGRLKVES----AEIVADYGYWNPNPMFGG 77
          V++ T   VI  TV+   +    +S +   D   +V+S     ++  DYG+WNP+P++GG
Sbjct: 20 VLITTFVIVIFSTVMARPSISTNKSPSLDLDPSFRVKSKSFLPKLYGDYGFWNPSPVYGG 79

Query: 78 G--KAGPIHH 82
          G    GP+ H
Sbjct: 80 GFPYPGPVPH 89

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6608573.11.1e-1052.69hypothetical protein SDJN03_01915, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN55706.11.8e-1061.90hypothetical protein Csa_010844 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6C38.8e-1161.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G28375.14.6e-0432.86unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G100560.1CcUC05G100560.1mRNA