CcUC05G100000 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G100000
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RRM domain-containing protein
Location	CicolChr05: 28383527 .. 28387641 (-)
RNA-Seq Expression	CcUC05G100000
Synteny	CcUC05G100000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAAGTCCAAAAACAACACTATGCTACTAAGGCCCAAAGTAAGAATTATCCACGCCTCAAGTGAGAGAGACCTTATGACTGAGAGTTCCAATTTGACTATTGAAGTTTAAATTTGTTTTAAACCAACTACTGTAGACTTTCGCGGTTAAATTCATACATGAGTAAGTTTGTATCGTGAACAAATTTAAATATATAAATATGAAAAAATAAATAAAGATACATGACATATATGAACTATGCATGTTGTTATCTTTTCCCTTTTATTTCCACACCCTAAATTTTATGATATTTTATTTATGATTTTTTCGTTGACTTTAACCCCAAAGTTTAGTTCATGTACGTATTAGCTTTATTTATTTAATCAATTCATGAGCAAAATTGTTTAAAATAAAAATACTACTGTGTTTGATTTGTTATAGGTTAAAAGTACTTTTATTAATGTCAAATTACTATAAAGTATAACTATATGATACTATAAAATAATAATCTAAAATAATAATTATTGAGGTTGGTGGAGGTGGCCACCGAAGTTGGCCATCGATGGTGGTGGTCAAATGTGGCTAGAATTGAGCGTTGGTAGTGGTCACCGAAGTTGCACTAGAGTTGACTATGGATAGAAGTTTCCAAAGTTAGCCACTGGAGATGGTGGCTAGAGTGTCAATGAGGGCATTGATGGCGTTAAGAGCTTAGTGAATTATTGGTAGACATGGTAAAAAATATCAATACATGTCTAATTGCTTTCCCAATCATTGAATTGAGTTTACATCTCAACTTACATTATCTCTCCACTCCAAAAACGTACAAGGATTCTTTTGAATAAAATTTAAAAAATAAAAAAGTACAATTAAACTTTTAAAAATGGTTCTTTTCAAATATAGCATAAAAAATTAAAATATTTACAAATATAGTAAAATTTTATCATTTGTATGCGATAAATTGTGATAGTTGATATATTTTGCTATTAATCGTAAAGATTTTTAAGTAGGGTTGTCATTTAATATAATTTCCATTTAAAAATTTTTGTGGATTTTTGATAATTTAACTTCAATATGTTCCAGCGGATAGACCAACCAAGCTATCTTTGTTAGGGGCGGGGCAGTTGGTGTAATGCAACGCTAGGCGTGGGAGAAGTGGGGAAGAGACGAGGCCAAGCGGAGCAGACGACCAAGCCATGGGAGACGATGCTTATACCAGATACACCGCCTCAGTAGATAGAGGTAGTTCTCTCGTCTGGAACCCTAGTTCAACGACCTCTTTTCTTTCTTCTCTTCACTCGATGTTGGAACAAGTTTGGATTGTGTAGAATCGCTGCTGTATTTGTTCCGAAAATATTGTGATCATGGAATGAAAACTAGCTTAGGTCAACTAAATAAACATAAAAGAAAAATTATCAATGCATTAGAGGATGTCTGGATTAATGACTGTATTGTATTATTTTGCTTGGAAAGTTTTTATGGATAATGTAGCATCGGCCTCTTGAATAATTTATATGAAGCAATTGCAACCCTAGTTTCTGCTCTGCTTTGTGCTTGGCTCCCCACTTCATTTCAGATGCTGGTTTTTTAGGATACAAATCCTCTCTTCAACTTAGTCATTCTATAATATTCCCTTCCTCATCGTCTATTCATATCAATATTTAATTCTATTTGCATACCTCATTTTTTGAGCCTGAGAATCTGGGGTTAATTGAGTTCCCTTAAAGAAAAGGATGGGAAATGGAAGAGCCTCTCTTCTCCTTATGCAAATATTTTTCCTGTACATGGTTTGTGGAGAACCTATTCTGCAAACAGCGCACTTGAAACTGATGTTCAATCGTTGGCTCTTGCAGCAGGAAGTGCAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTATCCTAATTCGACCTCTATTGATCAGTGGCACATCCCTCCTGATTATTTGCAAAAAGATGTAGGAATTTCATCTTTAGCCTAAAATATATTTGTTTAAGAAGTGCTCTGCTTGACTTGAAACTACAGACCCATTTGTTAGGACCTGGAGCTTATGGATATACTGACGTAGGAAACATTAGTAATTGTCCGGAACCAGTTATTGGCGGTGTGTCATCCGGAGGGAGTGCAAAAGGCTACACATCTCCTTTCGAAGATTCGTTAGCAAGTCAAAGACAAGATATCGTAGTGGGCAGTAGTCCAGGAGTGATGGGTATGGCCGACATAGATCATGAAAGGGCCAATTCTCTCAGTCTCAGAACTACTGAATGTGATCCAAATTCATCTCGGGAATCAAACATCCTTTTCGTTGGTGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCGTATCCTTGCAGCTCATGTGCTTTCTTTTGTTACTATTTCTCCTGTCTTTCCAACTTTATTTGCGCCAGTGCTTTAACTTTCTCAGGGTGTAGGCAGCGTCCCAAACAATTATGCTTCAGTTAAAACTTAAAACAAGCATTGTTCTTTTCTTGATGTCACTTTAGTCGAAGAAAATAGGATGTAAATTGCAATAGACAGAACTATTGTTACTCAGCCATGTTTTGTCATATCTTAATTTTGAGTTGAAGATCTTTTCCGCCCCTTTATTGGCTACAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAGTAAGTTATCAGGTTCTCTTTACTTTGAAGTTTAAACTATGGAGGCATGTTTTACTACGATTAGACCTTCATTGGCAATTAACAACTGTACGCACTCTTTGGTGGAGGGCCTGTTTATAGTTATCGTGTCCTTATGTTCGGATCTTATGGTGTTATTTTCTTGTGTCATATGTTCTTAAATGTCAATATATATTCCCTCTTTTAAAACGAGTAATTGAACTGCAGAATGGAGATAAAGCTATGGTATTATGCTTTGTTGAGTTCGTTGAAGCAAGGTATGCCCGGGCTGCAATGGAAACTCTTCAAGGTATTGTGTAATTTGTTCCTCTTTGTATGGGTGATAATCTTAGTCAAGACGTAAAGATGAAAACATGCAGCAGTATTTAGGTCACGTATTGCTTGGTACATAAAATTTGTGATCTAATATTTAGCCAAGTATACTTGGCACTATAATTGACGCCATTGACATTATTTTAGCCAAAACTCATTCAAGGAATTTCTCTAAATGAACTGACAAACTCTTAAAATGCTTCATATAACTTCAGATAATCTGATGTATAAATCTGCAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTTCGTTTACCATCTAACTACGATGACAGGCGATGAATGTCGTATCCAACACCTTCTGGAACGCCGTAGTCTGAAGGAACTGGCAGGTTTTTGTTTGGCACCTTCCTGATACAACTTATGTGTAAGGTAACCCTGTGGATGGGTACGTGGTTTCCTGTTGTTAGGTGCCTTTTGGGTTCCGTAGAACAGTAGAAGTCCATTCCTGAACAGAATAGAGAATTAAGGGGGTGTTGGCCCTCCAATTTCAAGTTTGTGGAGTAGACTATTTAGTCCACCCTATGTTTTGAGCTCCAAATATAATAGTTTTGTTTACAACTGTTTATAACCTACAATTATCTACAGTAATACTATTTGAAATCTCTCTTTGTTACAGTGTTTACTATTTCTTACTCATCATCTCTTTTCCTCTTAGTTACAATATTTGTTATTTTCTACTCAGACTAAAATAGTTTGCATCCCAAACACAGACTATTGTAACCCACAAACTATTATAACCACTGAGTATAATAATCAATTCAACGCCTCAAAGGCCTCCTAAAAGGTTTAGAGGAAGCATAGGGCAACACGGTTGCTATCACCATGACTACAACAGTTTTCAGTTTTTCATGTTGGGCCAGGATGAGCCCAGAGAAGAATCAAAAGGGCGTTTTCCCAAAATCAAATTCCTGTTTGGTATTGGTATTGATATTGATCTGTGTGACTTTTGGATCTCATTTTGGCTATCAAGTTGTAGTCAGATGACTTGTTACTCTTTTTTCTGCCTTGTCAGGTTTCAGACATCTTCTGCTTGGGATCATGAAAATGACATATAGGTACAAAGATTCCTGA

mRNA sequence

ATGGAGAAAGTCCAAAAACAACACTATGCTACTAAGGCCCAAAGTAAGAATTATCCACGCCTCAAGCGTGGGAGAAGTGGGGAAGAGACGAGGCCAAGCGGAGCAGACGACCAAGCCATGGGAGACGATGCTTATACCAGATACACCGCCTCAGTAGATAGAGCAGGAAGTGCAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTATCCTAATTCGACCTCTATTGATCAGTGGCACATCCCTCCTGATTATTTGCAAAAAGATACCCATTTGTTAGGACCTGGAGCTTATGGATATACTGACGTAGGAAACATTAGTAATTGTCCGGAACCAGTTATTGGCGGTGTGTCATCCGGAGGGAGTGCAAAAGGCTACACATCTCCTTTCGAAGATTCGTTAGCAAGTCAAAGACAAGATATCGTAGTGGGCAGTAGTCCAGGAGTGATGGGTATGGCCGACATAGATCATGAAAGGGCCAATTCTCTCAGTCTCAGAACTACTGAATGTGATCCAAATTCATCTCGGGAATCAAACATCCTTTTCGTTGGTGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCCTTTATTGGCTACAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAATGGAGATAAAGCTATGGTATTATGCTTTGTTGAGTTCGTTGAAGCAAGGTATGCCCGGGCTGCAATGGAAACTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTTCGCGATGAATGTCGTATCCAACACCTTCTGGAACGCCGTAGTCTGAAGGAACTGGCAGGTTTCAGACATCTTCTGCTTGGGATCATGAAAATGACATATAGGTACAAAGATTCCTGA

Coding sequence (CDS)

ATGGAGAAAGTCCAAAAACAACACTATGCTACTAAGGCCCAAAGTAAGAATTATCCACGCCTCAAGCGTGGGAGAAGTGGGGAAGAGACGAGGCCAAGCGGAGCAGACGACCAAGCCATGGGAGACGATGCTTATACCAGATACACCGCCTCAGTAGATAGAGCAGGAAGTGCAGCGAGGTCTGGCCTTTCAACCTACTCTGAAGCACCTCCTTTGACATCTTATCCTAATTCGACCTCTATTGATCAGTGGCACATCCCTCCTGATTATTTGCAAAAAGATACCCATTTGTTAGGACCTGGAGCTTATGGATATACTGACGTAGGAAACATTAGTAATTGTCCGGAACCAGTTATTGGCGGTGTGTCATCCGGAGGGAGTGCAAAAGGCTACACATCTCCTTTCGAAGATTCGTTAGCAAGTCAAAGACAAGATATCGTAGTGGGCAGTAGTCCAGGAGTGATGGGTATGGCCGACATAGATCATGAAAGGGCCAATTCTCTCAGTCTCAGAACTACTGAATGTGATCCAAATTCATCTCGGGAATCAAACATCCTTTTCGTTGGTGGACTTCCTACAGATTGTACTAGGAGAGAAGTAGGCCATCTTTTCCGCCCCTTTATTGGCTACAAAGATATCAGAGTTGTTCACAAGGAGCCCAGACGAAATGGAGATAAAGCTATGGTATTATGCTTTGTTGAGTTCGTTGAAGCAAGGTATGCCCGGGCTGCAATGGAAACTCTTCAAGGTTACAAGTTCGATGACAAAAAACCTGATTCCCCTGCTTTGAAGATTCAATTTGCACATTTTCCTTTTCGCGATGAATGTCGTATCCAACACCTTCTGGAACGCCGTAGTCTGAAGGAACTGGCAGGTTTCAGACATCTTCTGCTTGGGATCATGAAAATGACATATAGGTACAAAGATTCCTGA

Protein sequence

MEKVQKQHYATKAQSKNYPRLKRGRSGEETRPSGADDQAMGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHIPPDYLQKDTHLLGPGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMADIDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPFRDECRIQHLLERRSLKELAGFRHLLLGIMKMTYRYKDS

Homology

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BLAST of CcUC05G100000 vs. NCBI nr
Match: XP_038896813.1 (RNA-binding protein 2-like isoform X2 [Benincasa hispida])

HSP 1 Score: 433.0 bits (1112), Expect = 2.2e-117
Identity = 211/234 (90.17%), Postives = 217/234 (92.74%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHIPPDYLQKDTHLLG 99
           MGDDAYTRY AS DRAGS ARSGLSTYSEAPPLTSYPNSTSIDQWHI PDYLQKDT+ +G
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIG 60

Query: 100 PGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMAD 159
           PGAYGYTDVG ISN PEPVIG V+SG SAKGYTSPFEDSLASQRQDI VGSSPGVMGMAD
Sbjct: 61  PGAYGYTDVGGISNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMAD 120

Query: 160 IDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 219
             HERANSLSLRT E DPNSSRESNILFV GLPTDCTRREVGHLFRPFIGYKDIRVVHKE
Sbjct: 121 TAHERANSLSLRTAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 220 PRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPFR 274
           PRR+GDKAMVLCFVEF+EARYAR AME LQGYKFDDKKPDSP+LKIQFAHFPFR
Sbjct: 181 PRRSGDKAMVLCFVEFIEARYARTAMEALQGYKFDDKKPDSPSLKIQFAHFPFR 234

[Close]

BLAST of CcUC05G100000 vs. NCBI nr
Match: XP_038896812.1 (RNA-binding protein 2-like isoform X1 [Benincasa hispida])

HSP 1 Score: 428.3 bits (1100), Expect = 5.5e-116
Identity = 211/235 (89.79%), Postives = 217/235 (92.34%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHIPPDYLQKDTHLLG 99
           MGDDAYTRY AS DRAGS ARSGLSTYSEAPPLTSYPNSTSIDQWHI PDYLQKDT+ +G
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIG 60

Query: 100 PGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMAD 159
           PGAYGYTDVG ISN PEPVIG V+SG SAKGYTSPFEDSLASQRQDI VGSSPGVMGMAD
Sbjct: 61  PGAYGYTDVGGISNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMAD 120

Query: 160 IDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 219
             HERANSLSLRT E DPNSSRESNILFV GLPTDCTRREVGHLFRPFIGYKDIRVVHKE
Sbjct: 121 TAHERANSLSLRTAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 220 PRRNGDKAMVLCFVEFVEARYARAAMETLQ-GYKFDDKKPDSPALKIQFAHFPFR 274
           PRR+GDKAMVLCFVEF+EARYAR AME LQ GYKFDDKKPDSP+LKIQFAHFPFR
Sbjct: 181 PRRSGDKAMVLCFVEFIEARYARTAMEALQAGYKFDDKKPDSPSLKIQFAHFPFR 235

[Close]

BLAST of CcUC05G100000 vs. NCBI nr
Match: XP_038896814.1 (nuclear speckle RNA-binding protein B-like isoform X3 [Benincasa hispida])

HSP 1 Score: 422.5 bits (1085), Expect = 3.0e-114
Identity = 210/235 (89.36%), Postives = 216/235 (91.91%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHIPPDYLQKDTHLLG 99
           MGDDAYTRY AS DR GS ARSGLSTYSEAPPLTSYPNSTSIDQWHI PDYLQKDT+ +G
Sbjct: 1   MGDDAYTRYAASADR-GSVARSGLSTYSEAPPLTSYPNSTSIDQWHITPDYLQKDTNSIG 60

Query: 100 PGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMAD 159
           PGAYGYTDVG ISN PEPVIG V+SG SAKGYTSPFEDSLASQRQDI VGSSPGVMGMAD
Sbjct: 61  PGAYGYTDVGGISNYPEPVIGSVASGASAKGYTSPFEDSLASQRQDIAVGSSPGVMGMAD 120

Query: 160 IDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 219
             HERANSLSLRT E DPNSSRESNILFV GLPTDCTRREVGHLFRPFIGYKDIRVVHKE
Sbjct: 121 TAHERANSLSLRTAEGDPNSSRESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 220 PRRNGDKAMVLCFVEFVEARYARAAMETLQ-GYKFDDKKPDSPALKIQFAHFPFR 274
           PRR+GDKAMVLCFVEF+EARYAR AME LQ GYKFDDKKPDSP+LKIQFAHFPFR
Sbjct: 181 PRRSGDKAMVLCFVEFIEARYARTAMEALQAGYKFDDKKPDSPSLKIQFAHFPFR 234

[Close]

BLAST of CcUC05G100000 vs. NCBI nr
Match: XP_008452748.1 (PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa] >TYK20076.1 RNA-binding protein 2-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 7.3e-108
Identity = 198/236 (83.90%), Postives = 210/236 (88.98%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHI-PPDYLQKDTHLL 99
           MGDDAYTRY AS DRAGS ARSGLSTYSEAPPL SYPNSTSIDQWH  PPDY+ +DT+ L
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSL 60

Query: 100 GPGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMA 159
           GPGAYGYTD+G  S  PEPVIGGV+SG SA GY SPF DSLASQRQDI VGSSPGVMG A
Sbjct: 61  GPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRA 120

Query: 160 DIDHERANSLS-LRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVH 219
           DI HERANSLS +RT ECDP S RESNILFV GLPTDCTRREVGHLFRPF+GYKDIRVVH
Sbjct: 121 DIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVH 180

Query: 220 KEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPFR 274
           KEPRR+GDKA VLCFVEFVEA++++AAME LQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 181 KEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 236

[Close]

BLAST of CcUC05G100000 vs. NCBI nr
Match: XP_004141330.1 (RNA-binding protein 2 isoform X1 [Cucumis sativus] >KGN55353.1 hypothetical protein Csa_012024 [Cucumis sativus])

HSP 1 Score: 400.6 bits (1028), Expect = 1.2e-107
Identity = 196/236 (83.05%), Postives = 209/236 (88.56%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHI--PPDYLQKDTHL 99
           MGDDAYTRY AS DRAGS ARSGLSTYSEAPPL SYPNSTSIDQWH   PPDY+ +DT+ 
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRDTNS 60

Query: 100 LGPGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGM 159
           LGPGAYGYTD+G  S  PEPVIGGV+SGGSA GY SPF DSLASQRQDI VGSSPGVMG 
Sbjct: 61  LGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVMGR 120

Query: 160 ADIDHERANSLSL-RTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVV 219
           ADI HERANSL+L RT ECDP+  RESN+LFV GLPTDCTRREVGHLFRPF+GYKDIRVV
Sbjct: 121 ADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPFMGYKDIRVV 180

Query: 220 HKEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPF 273
           HKEPRR GDKAMVLCFVEFVEA++++AAME LQGYKFDDKKPDSP LKIQFAHFPF
Sbjct: 181 HKEPRRTGDKAMVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPVLKIQFAHFPF 236

[Close]

BLAST of CcUC05G100000 vs. ExPASy Swiss-Prot
Match: Q8H0P8 (RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.4e-21
Identity = 44/89 (49.44%), Postives = 64/89 (71.91%), Query Frame = 0


Query: 183 SNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRNGDKAMVLCFVEFVEARYAR 242
           S  L++ GLP+DCTRREV H+FRPF+GY+++R+V KE +  GD  ++LCFV+F     A 
Sbjct: 150 SPTLYIEGLPSDCTRREVAHIFRPFVGYREVRLVSKEAKHRGD-PLILCFVDFANPACAA 209

Query: 243 AAMETLQGYKFDDKKPDSPALKIQFAHFP 272
            A+  LQGYK D+  P+S  L++QF+ +P
Sbjct: 210 TALSALQGYKVDEINPESSHLRLQFSRYP 237

[Close]

BLAST of CcUC05G100000 vs. ExPASy Swiss-Prot
Match: A1A6K6 (Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-20
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 180 SRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPR-RNGDKAMVLCFVEFVEA 239
           S  SN L+V GLP++C+RREV H+FRPF+GY+++R+V K+ + RNGD  +VLCFV+F   
Sbjct: 132 SDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGD-PIVLCFVDFTNP 191

Query: 240 RYARAAMETLQGYKFDDKKPDSPALKIQFAHFP 272
             A  A+  LQGY+ D+ + DS  L++QF+  P
Sbjct: 192 ACAATALSALQGYRMDENESDSKFLRLQFSRKP 223

[Close]

BLAST of CcUC05G100000 vs. ExPASy Swiss-Prot
Match: G7ID19 (RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.0e-19
Identity = 73/247 (29.55%), Postives = 110/247 (44.53%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHIPPDYLQKDTHLLG 99
           M D  + R    +   G   +   + Y  AP   +  N             +  DT +LG
Sbjct: 1   MADGFWNRQQQHLPPPGGMLKRPRTEYDTAPSGVTSGNEVHNYIAQNNGHQMLNDTKILG 60

Query: 100 PGAYGYTDVGNISNC---PEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMG 159
                +     +++       VIGGV   G A+G       SL        +G   GV G
Sbjct: 61  SAYDRFLQSAGLTSFNSGEASVIGGV---GFARGVGELPGHSLGDPS---AMGHLSGVGG 120

Query: 160 MADIDHE----------RANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRP 219
             D+               +++S    E  P     S+ L+V GLP+D T+REV H+FRP
Sbjct: 121 GPDLSRNGRDVNFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVAHIFRP 180

Query: 220 FIGYKDIRVVHKEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQ 274
           F+GY+++R+V KE +  G   ++LCFV+F     A  A+  LQGYK D+  P+S  L++Q
Sbjct: 181 FVGYREVRLVAKESKHRGGDPLILCFVDFANPACAATALSALQGYKVDEINPESSYLRLQ 240

[Close]

BLAST of CcUC05G100000 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 6.5e-19
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 159 DIDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHK 218
           D+   + +S+     E  P     SN L+V GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 219 EPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFP 272
           + +       VLCFV+F  +  A  A+  LQ Y+ D+ +PDS  L++QF   P
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 410

[Close]

BLAST of CcUC05G100000 vs. ExPASy Swiss-Prot
Match: Q6JB11 (Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.7e-17
Identity = 39/80 (48.75%), Postives = 55/80 (68.75%), Query Frame = 0


Query: 183 SNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRNGDKAMVLCFVEFVEARYAR 242
           S+ L++ GLP +CTRREV H+FRPF+G++++R+V+KE R  G    VLCFV+F     A 
Sbjct: 37  SSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQAT 96

Query: 243 AAMETLQGYKFDDKKPDSPA 263
            A+E LQG+  DD    +PA
Sbjct: 97  IALEALQGHVTDDVNVSAPA 116

[Close]

BLAST of CcUC05G100000 vs. ExPASy TrEMBL
Match: A0A5D3D938 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001990 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 3.5e-108
Identity = 198/236 (83.90%), Postives = 210/236 (88.98%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHI-PPDYLQKDTHLL 99
           MGDDAYTRY AS DRAGS ARSGLSTYSEAPPL SYPNSTSIDQWH  PPDY+ +DT+ L
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSL 60

Query: 100 GPGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMA 159
           GPGAYGYTD+G  S  PEPVIGGV+SG SA GY SPF DSLASQRQDI VGSSPGVMG A
Sbjct: 61  GPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRA 120

Query: 160 DIDHERANSLS-LRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVH 219
           DI HERANSLS +RT ECDP S RESNILFV GLPTDCTRREVGHLFRPF+GYKDIRVVH
Sbjct: 121 DIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVH 180

Query: 220 KEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPFR 274
           KEPRR+GDKA VLCFVEFVEA++++AAME LQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 181 KEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 236

[Close]

BLAST of CcUC05G100000 vs. ExPASy TrEMBL
Match: A0A1S3BU06 (RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 3.5e-108
Identity = 198/236 (83.90%), Postives = 210/236 (88.98%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHI-PPDYLQKDTHLL 99
           MGDDAYTRY AS DRAGS ARSGLSTYSEAPPL SYPNSTSIDQWH  PPDY+ +DT+ L
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSL 60

Query: 100 GPGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMA 159
           GPGAYGYTD+G  S  PEPVIGGV+SG SA GY SPF DSLASQRQDI VGSSPGVMG A
Sbjct: 61  GPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRA 120

Query: 160 DIDHERANSLS-LRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVH 219
           DI HERANSLS +RT ECDP S RESNILFV GLPTDCTRREVGHLFRPF+GYKDIRVVH
Sbjct: 121 DIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVH 180

Query: 220 KEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPFR 274
           KEPRR+GDKA VLCFVEFVEA++++AAME LQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 181 KEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 236

[Close]

BLAST of CcUC05G100000 vs. ExPASy TrEMBL
Match: A0A0A0L0S1 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 6.0e-108
Identity = 196/236 (83.05%), Postives = 209/236 (88.56%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHI--PPDYLQKDTHL 99
           MGDDAYTRY AS DRAGS ARSGLSTYSEAPPL SYPNSTSIDQWH   PPDY+ +DT+ 
Sbjct: 1   MGDDAYTRYAASADRAGSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPPDYMPRDTNS 60

Query: 100 LGPGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGM 159
           LGPGAYGYTD+G  S  PEPVIGGV+SGGSA GY SPF DSLASQRQDI VGSSPGVMG 
Sbjct: 61  LGPGAYGYTDLGGNSKYPEPVIGGVTSGGSATGYASPFADSLASQRQDIAVGSSPGVMGR 120

Query: 160 ADIDHERANSLSL-RTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVV 219
           ADI HERANSL+L RT ECDP+  RESN+LFV GLPTDCTRREVGHLFRPF+GYKDIRVV
Sbjct: 121 ADIGHERANSLNLIRTAECDPSPLRESNVLFVDGLPTDCTRREVGHLFRPFMGYKDIRVV 180

Query: 220 HKEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPF 273
           HKEPRR GDKAMVLCFVEFVEA++++AAME LQGYKFDDKKPDSP LKIQFAHFPF
Sbjct: 181 HKEPRRTGDKAMVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPVLKIQFAHFPF 236

[Close]

BLAST of CcUC05G100000 vs. ExPASy TrEMBL
Match: A0A1S3BUL5 (RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE=4 SV=1)

HSP 1 Score: 395.6 bits (1015), Expect = 1.9e-106
Identity = 197/236 (83.47%), Postives = 209/236 (88.56%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHI-PPDYLQKDTHLL 99
           MGDDAYTRY AS DR GS ARSGLSTYSEAPPL SYPNSTSIDQWH  PPDY+ +DT+ L
Sbjct: 1   MGDDAYTRYAASADR-GSVARSGLSTYSEAPPLASYPNSTSIDQWHTPPPDYMPRDTNSL 60

Query: 100 GPGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMA 159
           GPGAYGYTD+G  S  PEPVIGGV+SG SA GY SPF DSLASQRQDI VGSSPGVMG A
Sbjct: 61  GPGAYGYTDLGGNSKYPEPVIGGVTSGVSATGYASPFADSLASQRQDIAVGSSPGVMGRA 120

Query: 160 DIDHERANSLS-LRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVH 219
           DI HERANSLS +RT ECDP S RESNILFV GLPTDCTRREVGHLFRPF+GYKDIRVVH
Sbjct: 121 DIGHERANSLSIIRTAECDPTSLRESNILFVDGLPTDCTRREVGHLFRPFMGYKDIRVVH 180

Query: 220 KEPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPFR 274
           KEPRR+GDKA VLCFVEFVEA++++AAME LQGYKFDDKKPDSPALKIQFAHFPFR
Sbjct: 181 KEPRRSGDKATVLCFVEFVEAKFSQAAMEALQGYKFDDKKPDSPALKIQFAHFPFR 235

[Close]

BLAST of CcUC05G100000 vs. ExPASy TrEMBL
Match: A0A6J1J4R2 (RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 9.9e-103
Identity = 190/234 (81.20%), Postives = 198/234 (84.62%), Query Frame = 0


Query: 40  MGDDAYTRYTASVDRAGSAARSGLSTYSEAPPLTSYPNSTSIDQWHIPPDYLQKDTHLLG 99
           MGDDAYTRY AS DRAGS ARSGLS YSEAPPLTSYPNSTSID W IPPDYLQK+T   G
Sbjct: 1   MGDDAYTRYAASGDRAGSVARSGLSNYSEAPPLTSYPNSTSIDPWRIPPDYLQKETDSSG 60

Query: 100 PGAYGYTDVGNISNCPEPVIGGVSSGGSAKGYTSPFEDSLASQRQDIVVGSSPGVMGMAD 159
           PG YGYTDVG I N PEPVIGGV+SG SA G TSPF D+ A QR DI VGSSPG+M MAD
Sbjct: 61  PGTYGYTDVGGIRNYPEPVIGGVTSGVSATGNTSPFHDAQARQRHDIAVGSSPGLMAMAD 120

Query: 160 IDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 219
             HE+ANSL LR  E  P S+ ESNILFV GLPTDCTRREVGHLFRPFIGYKDIRVVHKE
Sbjct: 121 TGHEKANSLGLRNPERVPISAHESNILFVDGLPTDCTRREVGHLFRPFIGYKDIRVVHKE 180

Query: 220 PRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFPFR 274
           PRR GDKA VLCFVEF+EARY+RAAME LQGYKFDDKKPDS ALKIQFAHFPFR
Sbjct: 181 PRRRGDKATVLCFVEFIEARYSRAAMEALQGYKFDDKKPDSLALKIQFAHFPFR 234

[Close]

BLAST of CcUC05G100000 vs. TAIR 10
Match: AT1G76940.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-21
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 180 SRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPR-RNGDKAMVLCFVEFVEA 239
           S  SN L+V GLP++C+RREV H+FRPF+GY+++R+V K+ + RNGD  +VLCFV+F   
Sbjct: 132 SDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGD-PIVLCFVDFTNP 191

Query: 240 RYARAAMETLQGYKFDDKKPDSPALKIQFAHFP 272
             A  A+  LQGY+ D+ + DS  L++QF+  P
Sbjct: 192 ACAATALSALQGYRMDENESDSKFLRLQFSRKP 223

[Close]

BLAST of CcUC05G100000 vs. TAIR 10
Match: AT1G76940.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 100.5 bits (249), Expect = 2.5e-21
Identity = 46/93 (49.46%), Postives = 67/93 (72.04%), Query Frame = 0


Query: 180 SRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPR-RNGDKAMVLCFVEFVEA 239
           S  SN L+V GLP++C+RREV H+FRPF+GY+++R+V K+ + RNGD  +VLCFV+F   
Sbjct: 78  SDASNTLYVEGLPSNCSRREVAHIFRPFVGYREVRLVTKDSKHRNGD-PIVLCFVDFTNP 137

Query: 240 RYARAAMETLQGYKFDDKKPDSPALKIQFAHFP 272
             A  A+  LQGY+ D+ + DS  L++QF+  P
Sbjct: 138 ACAATALSALQGYRMDENESDSKFLRLQFSRKP 169

[Close]

BLAST of CcUC05G100000 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-20
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 159 DIDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHK 218
           D+   + +S+     E  P     SN L+V GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 298 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 357

Query: 219 EPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFP 272
           + +       VLCFV+F  +  A  A+  LQ Y+ D+ +PDS  L++QF   P
Sbjct: 358 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 410

[Close]

BLAST of CcUC05G100000 vs. TAIR 10
Match: AT1G21320.2 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 96.3 bits (238), Expect = 4.6e-20
Identity = 44/113 (38.94%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 159 DIDHERANSLSLRTTECDPNSSRESNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHK 218
           D+   + +S+     E  P     SN L+V GLP++C+RREV H+FRPF+GY+++R+V +
Sbjct: 130 DMGFGQLDSVGRPGREPHPLPPDVSNTLYVEGLPSNCSRREVSHIFRPFVGYREVRLVTQ 189

Query: 219 EPRRNGDKAMVLCFVEFVEARYARAAMETLQGYKFDDKKPDSPALKIQFAHFP 272
           + +       VLCFV+F  +  A  A+  LQ Y+ D+ +PDS  L++QF   P
Sbjct: 190 DSKHRSGDPTVLCFVDFENSACAATALSALQDYRMDEDEPDSKILRLQFFRNP 242

[Close]

BLAST of CcUC05G100000 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 47.8 bits (112), Expect = 1.9e-05
Identity = 25/76 (32.89%), Postives = 41/76 (53.95%), Query Frame = 0


Query: 183 SNILFVGGLPTDCTRREVGHLFRPFIGYKDIRVVHKEPRRNGDKAMVLCFVEFVEARYAR 242
           +NILF+  LP + T   +  LF  + G+K+IR++  +P         + FVE+ +   A 
Sbjct: 157 NNILFIQNLPHETTSMMLQLLFEQYPGFKEIRMIDAKPG--------IAFVEYEDDVQAS 216

Query: 243 AAMETLQGYKFDDKKP 259
            AM+ LQG+K   + P
Sbjct: 217 IAMQPLQGFKITPQNP 224

The following BLAST results are available for this feature:

BLAST of CcUC05G100000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896813.1	2.2e-117	90.17	RNA-binding protein 2-like isoform X2 [Benincasa hispida]	[more]
XP_038896812.1	5.5e-116	89.79	RNA-binding protein 2-like isoform X1 [Benincasa hispida]	[more]
XP_038896814.1	3.0e-114	89.36	nuclear speckle RNA-binding protein B-like isoform X3 [Benincasa hispida]	[more]
XP_008452748.1	7.3e-108	83.90	PREDICTED: RNA-binding protein 2-like isoform X1 [Cucumis melo] >KAA0064514.1 RN...	[more]
XP_004141330.1	1.2e-107	83.05	RNA-binding protein 2 isoform X1 [Cucumis sativus] >KGN55353.1 hypothetical prot...	[more]

BLAST of CcUC05G100000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8H0P8	1.4e-21	49.44	RNA-binding protein 1 OS=Medicago truncatula OX=3880 GN=RBP1 PE=2 SV=1	[more]
A1A6K6	3.5e-20	49.46	Nuclear speckle RNA-binding protein A OS=Arabidopsis thaliana OX=3702 GN=NSRA PE...	[more]
G7ID19	1.0e-19	29.55	RNA-binding protein 2 OS=Medicago truncatula OX=3880 GN=RBP2 PE=2 SV=1	[more]
F4HWF9	6.5e-19	38.94	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q6JB11	4.7e-17	48.75	Protein MATERNALLY EXPRESSED GENE 5 OS=Zea mays OX=4577 GN=MEG5 PE=2 SV=1	[more]

BLAST of CcUC05G100000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D938	3.5e-108	83.90	RNA-binding protein 2-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3BU06	3.5e-108	83.90	RNA-binding protein 2-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
A0A0A0L0S1	6.0e-108	83.05	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G646270 PE=4 SV...	[more]
A0A1S3BUL5	1.9e-106	83.47	RNA-binding protein 2-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103493677 PE...	[more]
A0A6J1J4R2	9.9e-103	81.20	RNA-binding protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111481239 PE=4 SV=1	[more]

BLAST of CcUC05G100000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76940.1	2.5e-21	49.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G76940.2	2.5e-21	49.46	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G21320.1	4.6e-20	38.94	nucleotide binding;nucleic acid binding	[more]
AT1G21320.2	4.6e-20	38.94	nucleotide binding;nucleic acid binding	[more]
AT2G30260.1	1.9e-05	32.89	U2 small nuclear ribonucleoprotein B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 185..262 e-value: 5.3E-7 score: 39.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 186..257 e-value: 1.8E-13 score: 50.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 184..270 score: 11.929285
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 178..270 e-value: 7.1E-19 score: 69.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 21..36
None	No IPR available	PANTHER	PTHR10501:SF41	PROTEIN COUCH POTATO	coord: 44..273
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 44..273
None	No IPR available	CDD	cd12420	RRM_RBPMS_like	coord: 184..266 e-value: 4.76824E-31 score: 109.667
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 178..257

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G100000.1	CcUC05G100000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding