CcUC05G099490 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G099490
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRING-type domain-containing protein
LocationCicolChr05: 27959180 .. 27959599 (-)
RNA-Seq ExpressionCcUC05G099490
SyntenyCcUC05G099490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTACAAAGAATTTCTGATGGATGGGTATTCCAGTAAACGAGTTCATATGGGAATTGTTTCTAGGAAGGGACTTGGTGTAGTTTTGAGGGATAACATGAAGCACCGGGATCAAAGTAATCAATACGATAACCGACTTGGCTGCACTGGCAGGATATGCTCCAGTAGTGGTGCACAAGTTCGCTGTTCAAATAAATCCAGCTCAAAAAGACCATTCCGCAGCTCAATTGGTAAAGAAGTTGTTGGAAGTTCCTCAAGTAGTTCCTCTGCAATCAGAAATCTCAGGAATTCTTTTCCATGGGCTTTTGGAAAGCTATCATCTAAGTTTACAGATTCATCTGAAAATAATAGCATTCATGATGAGTTGGAAGAACTGGAATTCATCTCACCTCCTGGATTGCTCCATACGTTCATGTAA

mRNA sequence

ATGGACTACAAAGAATTTCTGATGGATGGGTATTCCAGTAAACGAGTTCATATGGGAATTGTTTCTAGGAAGGGACTTGGTGTAGTTTTGAGGGATAACATGAAGCACCGGGATCAAAGTAATCAATACGATAACCGACTTGGCTGCACTGGCAGGATATGCTCCAGTAGTGGTGCACAAGTTCGCTGTTCAAATAAATCCAGCTCAAAAAGACCATTCCGCAGCTCAATTGGTAAAGAAGTTGTTGGAAGTTCCTCAAGTAGTTCCTCTGCAATCAGAAATCTCAGGAATTCTTTTCCATGGGCTTTTGGAAAGCTATCATCTAAGTTTACAGATTCATCTGAAAATAATAGCATTCATGATGAGTTGGAAGAACTGGAATTCATCTCACCTCCTGGATTGCTCCATACGTTCATGTAA

Coding sequence (CDS)

ATGGACTACAAAGAATTTCTGATGGATGGGTATTCCAGTAAACGAGTTCATATGGGAATTGTTTCTAGGAAGGGACTTGGTGTAGTTTTGAGGGATAACATGAAGCACCGGGATCAAAGTAATCAATACGATAACCGACTTGGCTGCACTGGCAGGATATGCTCCAGTAGTGGTGCACAAGTTCGCTGTTCAAATAAATCCAGCTCAAAAAGACCATTCCGCAGCTCAATTGGTAAAGAAGTTGTTGGAAGTTCCTCAAGTAGTTCCTCTGCAATCAGAAATCTCAGGAATTCTTTTCCATGGGCTTTTGGAAAGCTATCATCTAAGTTTACAGATTCATCTGAAAATAATAGCATTCATGATGAGTTGGAAGAACTGGAATTCATCTCACCTCCTGGATTGCTCCATACGTTCATGTAA

Protein sequence

MDYKEFLMDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKFTDSSENNSIHDELEELEFISPPGLLHTFM
Homology
BLAST of CcUC05G099490 vs. NCBI nr
Match: XP_038898034.1 (uncharacterized protein LOC120085870 [Benincasa hispida] >XP_038898035.1 uncharacterized protein LOC120085870 [Benincasa hispida] >XP_038898036.1 uncharacterized protein LOC120085870 [Benincasa hispida] >XP_038898037.1 uncharacterized protein LOC120085870 [Benincasa hispida] >XP_038898038.1 uncharacterized protein LOC120085870 [Benincasa hispida] >XP_038898039.1 uncharacterized protein LOC120085870 [Benincasa hispida] >XP_038898040.1 uncharacterized protein LOC120085870 [Benincasa hispida])

HSP 1 Score: 207.2 bits (526), Expect = 9.0e-50
Identity = 110/131 (83.97%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MDGYSSKRV++GI+SRKG GVVLRDNMKHRDQSNQY NR GCTGRICSSSG QV CSNKS
Sbjct: 1   MDGYSSKRVNVGILSRKGPGVVLRDNMKHRDQSNQYGNRFGCTGRICSSSGTQVGCSNKS 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKEVVGSSS SSSAIRNLR S+P  FGK SSK   DSS N+SIHDELEEL
Sbjct: 61  SSKRPFRSSSGKEVVGSSSRSSSAIRNLRKSYPEPFGKQSSKLELDSSANDSIHDELEEL 120

Query: 128 EFISPPGLLHT 138
           EFISPPGL HT
Sbjct: 121 EFISPPGLFHT 131

BLAST of CcUC05G099490 vs. NCBI nr
Match: XP_022940547.1 (uncharacterized protein LOC111446115 [Cucurbita moschata] >XP_022940548.1 uncharacterized protein LOC111446115 [Cucurbita moschata] >XP_022940549.1 uncharacterized protein LOC111446115 [Cucurbita moschata])

HSP 1 Score: 200.3 bits (508), Expect = 1.1e-47
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD YSSKRVHMGIVSRKG GVVLRDN+K+RDQSN+Y NRLGCTGRIC++SG QV CSNK+
Sbjct: 1   MDEYSSKRVHMGIVSRKGPGVVLRDNVKNRDQSNRYGNRLGCTGRICTTSGVQVGCSNKT 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLSSK  TDSSEN+SI D+LEEL
Sbjct: 61  SSKRPFRSSSGKEVVGSSSKSSSAIRNLRKSFPEPFAKLSSKLETDSSENDSIQDDLEEL 120

Query: 128 EFISPPGLLHT 138
           EFISPP L HT
Sbjct: 121 EFISPPVLFHT 131

BLAST of CcUC05G099490 vs. NCBI nr
Match: XP_022981972.1 (uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981973.1 uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981974.1 uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981975.1 uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981976.1 uncharacterized protein LOC111480963 [Cucurbita maxima])

HSP 1 Score: 199.1 bits (505), Expect = 2.5e-47
Identity = 106/131 (80.92%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD Y+SKRVHMGIVSRKG GVVLRDN+K+RDQSN+Y NRLGCTGRIC++SG QV CSNK+
Sbjct: 1   MDEYASKRVHMGIVSRKGPGVVLRDNVKNRDQSNRYGNRLGCTGRICTTSGVQVGCSNKT 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLSSK  TDSSEN+SI D+LEEL
Sbjct: 61  SSKRPFRSSSGKEVVGSSSKSSSAIRNLRKSFPEPFAKLSSKLETDSSENDSIQDDLEEL 120

Query: 128 EFISPPGLLHT 138
           EFISPP L HT
Sbjct: 121 EFISPPVLFHT 131

BLAST of CcUC05G099490 vs. NCBI nr
Match: XP_023524149.1 (uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524150.1 uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524151.1 uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524152.1 uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 198.7 bits (504), Expect = 3.2e-47
Identity = 105/131 (80.15%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD YSSKRVHMGIVSRKG GVVLRDN+K+RDQSN+Y NRLGCTGR+C++SG QV CSNK+
Sbjct: 1   MDEYSSKRVHMGIVSRKGPGVVLRDNVKNRDQSNRYGNRLGCTGRVCTTSGVQVGCSNKT 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKEV+GSSS SSSAIRNLR SFP  F KLSSK  TDSSEN+SI D+LEEL
Sbjct: 61  SSKRPFRSSSGKEVLGSSSKSSSAIRNLRKSFPEPFAKLSSKLETDSSENDSIQDDLEEL 120

Query: 128 EFISPPGLLHT 138
           EFISPP L HT
Sbjct: 121 EFISPPVLFHT 131

BLAST of CcUC05G099490 vs. NCBI nr
Match: KAG7037563.1 (putative E3 ubiquitin-protein ligase HIP1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 4.3e-44
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD YSSKRVHMGIVSRKG GVVLRDN+K+RDQSN+Y NRLGCTGRIC++SG QV CSNK+
Sbjct: 1   MDEYSSKRVHMGIVSRKGPGVVLRDNVKNRDQSNRYGNRLGCTGRICTTSGVQVGCSNKT 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKEVVG    SSSAI NLR SFP  F KLSSK  TDSSEN+SI D+LEEL
Sbjct: 61  SSKRPFRSSSGKEVVG----SSSAIINLRKSFPEPFAKLSSKLETDSSENDSIQDDLEEL 120

Query: 128 EFISPPGLLHT 138
           EFISPP L HT
Sbjct: 121 EFISPPVLFHT 127

BLAST of CcUC05G099490 vs. ExPASy TrEMBL
Match: A0A6J1FKJ9 (uncharacterized protein LOC111446115 OS=Cucurbita moschata OX=3662 GN=LOC111446115 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 5.3e-48
Identity = 107/131 (81.68%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD YSSKRVHMGIVSRKG GVVLRDN+K+RDQSN+Y NRLGCTGRIC++SG QV CSNK+
Sbjct: 1   MDEYSSKRVHMGIVSRKGPGVVLRDNVKNRDQSNRYGNRLGCTGRICTTSGVQVGCSNKT 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLSSK  TDSSEN+SI D+LEEL
Sbjct: 61  SSKRPFRSSSGKEVVGSSSKSSSAIRNLRKSFPEPFAKLSSKLETDSSENDSIQDDLEEL 120

Query: 128 EFISPPGLLHT 138
           EFISPP L HT
Sbjct: 121 EFISPPVLFHT 131

BLAST of CcUC05G099490 vs. ExPASy TrEMBL
Match: A0A6J1J3B4 (uncharacterized protein LOC111480963 OS=Cucurbita maxima OX=3661 GN=LOC111480963 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.2e-47
Identity = 106/131 (80.92%), Postives = 115/131 (87.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD Y+SKRVHMGIVSRKG GVVLRDN+K+RDQSN+Y NRLGCTGRIC++SG QV CSNK+
Sbjct: 1   MDEYASKRVHMGIVSRKGPGVVLRDNVKNRDQSNRYGNRLGCTGRICTTSGVQVGCSNKT 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKEVVGSSS SSSAIRNLR SFP  F KLSSK  TDSSEN+SI D+LEEL
Sbjct: 61  SSKRPFRSSSGKEVVGSSSKSSSAIRNLRKSFPEPFAKLSSKLETDSSENDSIQDDLEEL 120

Query: 128 EFISPPGLLHT 138
           EFISPP L HT
Sbjct: 121 EFISPPVLFHT 131

BLAST of CcUC05G099490 vs. ExPASy TrEMBL
Match: A0A0A0LJG2 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G881840 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.5e-45
Identity = 106/138 (76.81%), Postives = 113/138 (81.88%), Query Frame = 0

Query: 1   MDYKEFLMDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQ 60
           +D KEFLMDGYSSKRVH+GIVSRKG GVVLRDNMKHRDQSN+  NR GC GRICSSSGAQ
Sbjct: 53  IDSKEFLMDGYSSKRVHVGIVSRKGPGVVLRDNMKHRDQSNKCSNRPGCNGRICSSSGAQ 112

Query: 61  VRCSNKSSSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSI 120
           V CS+K SSKRPF SS GKE  G    SSS I+NLR SFP  FGKLSSK  TDSSEN+SI
Sbjct: 113 VGCSSKFSSKRPFHSSSGKEGFG----SSSGIQNLRKSFPDPFGKLSSKLETDSSENDSI 172

Query: 121 HDELEELEFISPPGLLHT 138
            D+LEELEFISP GL HT
Sbjct: 173 QDDLEELEFISPHGLFHT 186

BLAST of CcUC05G099490 vs. ExPASy TrEMBL
Match: A0A6J1C5H9 (probable E3 ubiquitin-protein ligase RHG1A OS=Momordica charantia OX=3673 GN=LOC111008445 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 3.0e-43
Identity = 102/133 (76.69%), Postives = 114/133 (85.71%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD YSS+RVH+GIVSRKG GVVLRDNMK+RD SN + +RLGCTGRICSSSGA+V CS+K+
Sbjct: 1   MDEYSSRRVHVGIVSRKGPGVVLRDNMKNRDHSN-HGSRLGCTGRICSSSGAEVGCSSKA 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKRPFRSS GKE+VGSSS SSS IRN R SFP  FGKLSSK  TDSSE+ SI DELEEL
Sbjct: 61  SSKRPFRSSSGKEIVGSSSRSSS-IRNFRKSFPDPFGKLSSKLETDSSEDGSIQDELEEL 120

Query: 128 EFISPPGLLHTFM 140
           EFISPPG+ HT +
Sbjct: 121 EFISPPGMFHTVL 131

BLAST of CcUC05G099490 vs. ExPASy TrEMBL
Match: A0A6J1F8U9 (uncharacterized RING finger protein P4H10.07-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111443372 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 5.2e-43
Identity = 102/131 (77.86%), Postives = 110/131 (83.97%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYDNRLGCTGRICSSSGAQVRCSNKS 67
           MD Y SKRVH+GIVSRKG GVVLRDNMK RDQSN++ +RLGCTGRICSSS AQV  SNK+
Sbjct: 1   MDEYCSKRVHVGIVSRKGPGVVLRDNMKQRDQSNRHSDRLGCTGRICSSSDAQVGRSNKA 60

Query: 68  SSKRPFRSSIGKEVVGSSSSSSSAIRNLRNSFPWAFGKLSSKF-TDSSENNSIHDELEEL 127
           SSKR FRSS GKEVVG    SSSAIRN RNSFP  FGKLSSK  TDSS+N+SI DELEE+
Sbjct: 61  SSKRLFRSSSGKEVVG----SSSAIRNFRNSFPEPFGKLSSKLETDSSDNDSIQDELEEM 120

Query: 128 EFISPPGLLHT 138
           EF SPPGLLHT
Sbjct: 121 EFTSPPGLLHT 127

BLAST of CcUC05G099490 vs. TAIR 10
Match: AT5G24870.1 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-08
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYD--NRLGCTGRICSSSGAQVRCSN 67
           MDG+  KR    I+ RK  G+VL +NMK +D  +     +R+GC+ R+ S+ G  +    
Sbjct: 1   MDGFKGKRTSRPIMPRKASGLVLHENMKKKDDKSVVPICSRIGCSSRVSSTKGDLIDHKA 60

Query: 68  KSSSKRPFRSSI-GKEVVGSSSSSSSAIRNLRNSFPWAFGK--LSSKF-TDSSENNSIHD 127
           K++    FRS + GKE VGSSS S S     + +     G+  LSS    DSSE++S+++
Sbjct: 61  KATVS-SFRSPLSGKETVGSSSRSMSGFGGTKKASK-VIGRRQLSSLLDMDSSESSSVNE 120

Query: 128 ELEELEFISPPG 134
           +    E   P G
Sbjct: 121 DSPTSERSLPRG 130

BLAST of CcUC05G099490 vs. TAIR 10
Match: AT5G24870.2 (RING/U-box superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 5.3e-08
Identity = 47/132 (35.61%), Postives = 71/132 (53.79%), Query Frame = 0

Query: 8   MDGYSSKRVHMGIVSRKGLGVVLRDNMKHRDQSNQYD--NRLGCTGRICSSSGAQVRCSN 67
           MDG+  KR    I+ RK  G+VL +NMK +D  +     +R+GC+ R+ S+ G  +    
Sbjct: 1   MDGFKGKRTSRPIMPRKASGLVLHENMKKKDDKSVVPICSRIGCSSRVSSTKGDLIDHKA 60

Query: 68  KSSSKRPFRSSI-GKEVVGSSSSSSSAIRNLRNSFPWAFGK--LSSKF-TDSSENNSIHD 127
           K++    FRS + GKE VGSSS S S     + +     G+  LSS    DSSE++S+++
Sbjct: 61  KATVS-SFRSPLSGKETVGSSSRSMSGFGGTKKASK-VIGRRQLSSLLDMDSSESSSVNE 120

Query: 128 ELEELEFISPPG 134
           +    E   P G
Sbjct: 121 DSPTSERSLPRG 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038898034.19.0e-5083.97uncharacterized protein LOC120085870 [Benincasa hispida] >XP_038898035.1 unchara... [more]
XP_022940547.11.1e-4781.68uncharacterized protein LOC111446115 [Cucurbita moschata] >XP_022940548.1 unchar... [more]
XP_022981972.12.5e-4780.92uncharacterized protein LOC111480963 [Cucurbita maxima] >XP_022981973.1 uncharac... [more]
XP_023524149.13.2e-4780.15uncharacterized protein LOC111788150 [Cucurbita pepo subsp. pepo] >XP_023524150.... [more]
KAG7037563.14.3e-4478.63putative E3 ubiquitin-protein ligase HIP1 [Cucurbita argyrosperma subsp. argyros... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FKJ95.3e-4881.68uncharacterized protein LOC111446115 OS=Cucurbita moschata OX=3662 GN=LOC1114461... [more]
A0A6J1J3B41.2e-4780.92uncharacterized protein LOC111480963 OS=Cucurbita maxima OX=3661 GN=LOC111480963... [more]
A0A0A0LJG21.5e-4576.81RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G881840 P... [more]
A0A6J1C5H93.0e-4376.69probable E3 ubiquitin-protein ligase RHG1A OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A6J1F8U95.2e-4377.86uncharacterized RING finger protein P4H10.07-like isoform X2 OS=Cucurbita moscha... [more]
Match NameE-valueIdentityDescription
AT5G24870.15.3e-0835.61RING/U-box superfamily protein [more]
AT5G24870.25.3e-0835.61RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 65..91
NoneNo IPR availablePANTHERPTHR22937:SF136E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATEDcoord: 8..131
NoneNo IPR availablePANTHERPTHR22937E3 UBIQUITIN-PROTEIN LIGASE RNF165coord: 8..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G099490.1CcUC05G099490.1mRNA