CcUC05G097010 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G097010
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	glycine-rich RNA-binding protein 4, mitochondrial
Location	CicolChr05: 23994334 .. 23997207 (-)
RNA-Seq Expression	CcUC05G097010
Synteny	CcUC05G097010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAATCCAGGATATGTCGGTAATTTCAGACAATACCATTGCGTTATAGAAGAGTTCCCAATATCCCAAAAGCTCTCCTTTTTGGTCTAAGTTTTTCTTCGCCTCTTCCAGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCCGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACAGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCTACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGTAACGCGTTCTTTTTTAATCTAGATACCTTACGTTTATTTGCTTTAACAATCATGTATTTCCGTTTCGTATATCGCTCCTTTTCTGGTTGTGAAACTGCTAACGTTATTGTGTTTTATGGTTTCATTCCCGCCAAATTATTTCTATGCGGCGTTGGTGTCGATGTATATTGGAGTCTGGGGAATTTCATTTTTCCTGTTCTTCTTTTGGTCCTATTTTAGCGATCTAGTAATGGAGAAATGCTTAGTTACGTTTCTTCTTCTTCTTTTTTTAACCTTCAATGGTTGATTTGTTAGGTTTCTTTTTAGTTAGTGTTGAGACATCTTTTTGAAATTTTATGCTCCTCACCGTTCTTAAGTTTGCTTCCCCCCTCGGTTTTGAATTGTTGAGATGCTTCCGATGTATATTTATCGAGTTTCAAGATGGGAAGTTGATCTTTTTTAATTTTTGATTCTTGGAAGCTGGATTTGATATTTGGCTATGAATGTGTTGAGCTGTCTTTCTGTTTCTTTTCCACTAGAGGAATTTTTCTGTTTTTTAATATAGAACTTTGAATTATTGTTGTTTTTCTGGGGAAAAAAAAACTCTGGGATGGAATGTTGATGTTTATCTTCTTTCAGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCGAAGTTTGGAGAAGTTGTTCATGGTCTGTCCATTCGCTTTGCTTATGTTTGATTGTGCTTAGGCCTGAATATTTTCTGTCTTTGACCTTTTGTTTTCGCTTCTGTTTACAGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGGTGAGTTGGGATCACTTCCCTGTTTTCTCATTCAAGATGTTGAAGTTTATCTGGTGTGTAGTGTTATCCACATTTATACAAGATCCCTGGATCTTGAACTCACGTTTTGCACATGTGTTAGCAGTAGAGAGGCTAAGGTTGTTGACTACCCTCCTAATAGACATACTAAGAAATGAGAAAGAAAATGAATTAGAATATGCCTTCATTGTGTTAATTGGCGTACCACAAAATAAGTATAAGATTCCTGAATATGGTGTGTAGATCCACATATGCGTACAGGATGGCAGTCTAGAGTATTTGATTGGCAACATAGAGAATATATTACATCTTACAGCACTCAGCTGTTGACTATGATATATGCTTTGCAATCTTCAATCTTATGGTACCTGGCTTGGCTGATAAATCTGCTGGTTACTTCGGAGTGCAATTTCTCCTTTATTCTCATGCGCAATGGTGTTTGCTTTATGTAGTTCTTTCAAACATAGTAATATTTGTGGAAATTCATAAATTTATTTTTAGGGTTTTCTGCTATAATTTGCTTTTCCGTTTGAGCAACATGGTGGTAAGAGTAATTTCATTTTTTTTGGGGCGTGTATTGGAATCTTTCTAAAATTTCGACCCAGAAATTAGAATGGATGTTTAAGTTTAGCTGGTCCGAACACTCATGAAAGCATAGGGATTTCATTTTAATTGAATCTTCTAAAGAGTAAAGAGTCACTTTCATGAAAATATTCTGCCGTATAGGTTACTTGTGTCCTTAGTTGTAAAGTTATTAGTACTTTATCATCAATTTTTAAAACTATTGCCAATATGTGGCTCAATGGTTAGTGAATCTCTTATAGTCAAACGCTCTAGAAAGAACAGACTTGACAATGAAAATCGGTTATTATTGACCTATTAATTGATCCATGTTTCTTTTAATTCCATTTTGTCAAACTATGTTCACTATATATAACTTCTTGGTTTGGTTCATTGTAAAATTTGACATTTTAATGGAATACTCCTGTTATTAGCCATTTCAATCGCTTTGATGCCATGTGTTTTACGTCCTTGATCTCCAATTAAAACATATACTCTGATAAACTAGGCAAATTAGAATGCTTGGAAATAAGATTACGAAACTGGGTTGATGCTTGCTTTTGAACACAGTGCAATTTGTTTAATTGAATGATAATGAATCTCTTTATGTTTTGTCTCTTAATGTTATCCAGTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGGTTTTCCAAATGGCAGTCAATGACCCTCTTGCTAATTTTTGCAGTGAAGAATGCTTCCCTATCCTTTGAACGTTCTACATTATTTATATGATTGAAGTTCTTTCTTCAATTGAGGTTCATTGTTCTCTTCTATTGCTGATAACTTTTTTTGTTCTGCAGAACTGCAGAACTCTTGATTAGCTTCAGGTAATTTGAATTGAGTCAGAGCACTTTATACGTACCATGTATGACCTATTTTTGAACACATTTAGTTAAAACTAGTTTATTTATATATATGTTACGCAAATAAACTACATTCACTGCACTTTTGTTACTGATAAG

mRNA sequence

CAAAATCCAGGATATGTCGGTAATTTCAGACAATACCATTGCGTTATAGAAGAGTTCCCAATATCCCAAAAGCTCTCCTTTTTGGTCTAAGTTTTTCTTCGCCTCTTCCAGAAAGGGTTTAGTAGCTTAAACCCCAAGGCCATGGCTCTCAGATCGGCGGCGGCGGCCGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACAGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCTACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCGAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGGTTTTCCAAATGGCAGTCAATGACCCTCTTGCTAATTTTTGCAGTGAAGAATGCTTCCCTATCCTTTGAACGTTCTACATTATTTATATGATTGAAGTTCTTTCTTCAATTGAGGTTCATTGTTCTCTTCTATTGCTGATAACTTTTTTTGTTCTGCAGAACTGCAGAACTCTTGATTAGCTTCAGGTAATTTGAATTGAGTCAGAGCACTTTATACGTACCATGTATGACCTATTTTTGAACACATTTAGTTAAAACTAGTTTATTTATATATATGTTACGCAAATAAACTACATTCACTGCACTTTTGTTACTGATAAG

Coding sequence (CDS)

ATGGCTCTCAGATCGGCGGCGGCGGCCGCTCCTCGGAGTTTGAGGCGGCTCATTACAGGTACTTCAACTCGTACTCTACCGATAATCTCCCATGCTATTCATGATTGGGAGAAACAGGAACCCAGCACGAACGCTTTCCTTTCTGGCCGCTTGTTTTCTAGCGCTTCTACTTCCAGTTTCATTCCTCCGCCGCTCCCTCCATCGGCTCAGCAGCGTGAGATGCCTGAGCCTAGTACTAACCTTTTCGTTTCCGGCCTCAGTAAACGCACTACTACTGAAAAACTTCATGAAGCCTTCGCGAAGTTTGGAGAAGTTGTTCATGCACGAGTTGTGACTGATCGAGTGACTGGATATTCTAAAGGATTTGGCTTTGTTAAATATGCCACTTTGGAGGATGCGGCTAAAGGCATAGAGGGCATGGATGGCAAGTTCCTCGATGGTTGGGTTATATTTGCTGAGTATGCGAGGCCAAGACCACCTCCCGGGAACAATGGTTTTCCAAATGGCAGTCAATGA

Protein sequence

MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNGFPNGSQ

Homology

[Close]

BLAST of CcUC05G097010 vs. NCBI nr
Match: XP_038896843.1 (organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida])

HSP 1 Score: 321.2 bits (822), Expect = 5.3e-84
Identity = 164/172 (95.35%), Postives = 165/172 (95.93%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAAAAPRSLRRLITGTSTRTLPIIS  IHDWEK EPSTNAFLSGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISQTIHDWEKLEPSTNAFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE PEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREQPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNGF-PNGSQ 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP NNGF P+G Q
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNGFRPHGHQ 172

[Close]

BLAST of CcUC05G097010 vs. NCBI nr
Match: XP_008454580.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 303.5 bits (776), Expect = 1.1e-78
Identity = 156/173 (90.17%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEK  PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP-GNNGF-PNGSQ 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP  NNGF P G Q
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRQ 173

[Close]

BLAST of CcUC05G097010 vs. NCBI nr
Match: KAA0063485.1 (glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEK  PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP-GNNGF 167
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP  NNGF
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGF 167

[Close]

BLAST of CcUC05G097010 vs. NCBI nr
Match: XP_004151968.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN57946.1 hypothetical protein Csa_009766 [Cucumis sativus])

HSP 1 Score: 302.8 bits (774), Expect = 1.9e-78
Identity = 155/167 (92.81%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TSTRTLPIIS AIHDWEK EPST  FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP-GNNGF 167
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP  NNGF
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGF 167

[Close]

BLAST of CcUC05G097010 vs. NCBI nr
Match: XP_022940520.1 (organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschata] >KAG6607832.1 Organelle RRM domain-containing protein 2, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015229.1 Organelle RRM domain-containing protein 2, mitochondrial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 297.7 bits (761), Expect = 6.2e-77
Identity = 153/171 (89.47%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA APRSLRRLITGTS+RTLPIIS AI DWEK E STNAF+SGRLFSS S SSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE PEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNGFPNGSQ 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP ++  P  SQ
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQ 171

[Close]

BLAST of CcUC05G097010 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.7e-38
Identity = 85/133 (63.91%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 26  LPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSG 85
           LP IS A+     +  S    L     S+AS  SF+ P        R   EPSTNLFVSG
Sbjct: 7   LPAISRAV----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSG 66

Query: 86  LSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFL 145
           LSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKFL
Sbjct: 67  LSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFL 126

Query: 146 DGWVIFAEYARPR 159
           DGWVIFAEYARPR
Sbjct: 127 DGWVIFAEYARPR 135

[Close]

BLAST of CcUC05G097010 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.3e-18
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CcUC05G097010 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.5e-14
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPRPPPGNNG 166
              +G+ L+G  IF +YA+ +   G  G
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGG 120

[Close]

BLAST of CcUC05G097010 vs. ExPASy Swiss-Prot
Match: Q9FNR1 (Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG3 PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 67  PSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNG 166
           + + E A+  I+ +DG+ L G V+   YA  R   G  G
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGGGFG 126

[Close]

BLAST of CcUC05G097010 vs. ExPASy Swiss-Prot
Match: Q43472 (Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=1 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 5.0e-13
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = 0


Query: 74  MPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDA 133
           M +     FV GL   T  + L  AF+K+G+V+ ++++TDR TG S+GFGFV +A+ E  
Sbjct: 1   MADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAM 60

Query: 134 AKGIEGMDGKFLDGWVIFAEYARPRPPPGNNGFPNG 170
            + IE M+G+ LDG  I    A+ R   G  GF  G
Sbjct: 61  RQAIEAMNGQDLDGRNITVNEAQSRRSDGGGGFGGG 96

[Close]

BLAST of CcUC05G097010 vs. ExPASy TrEMBL
Match: A0A1S3C066 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103494967 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.5e-79
Identity = 156/173 (90.17%), Postives = 162/173 (93.64%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEK  PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP-GNNGF-PNGSQ 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP  NNGF P G Q
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGFAPYGRQ 173

[Close]

BLAST of CcUC05G097010 vs. ExPASy TrEMBL
Match: A0A5D3DR24 (Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00050 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.4e-79
Identity = 153/167 (91.62%), Postives = 159/167 (95.21%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LITGTSTRTLPIIS AIHDWEK  PSTN+FL GRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRQLITGTSTRTLPIISQAIHDWEKPVPSTNSFLFGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           +PPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAF+KFGEVVHARVVTDR TGYSK
Sbjct: 61  VPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFSKFGEVVHARVVTDRATGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP-GNNGF 167
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP  NNGF
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGF 167

[Close]

BLAST of CcUC05G097010 vs. ExPASy TrEMBL
Match: A0A0A0LD10 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 9.4e-79
Identity = 155/167 (92.81%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA+APRSLR+LIT TSTRTLPIIS AIHDWEK EPST  FLSGRLFSSASTSSF
Sbjct: 1   MALRSAAASAPRSLRKLITRTSTRTLPIISQAIHDWEKPEPSTITFLSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE+ EPSTNLFVSGLSKRTTTEKLHEAFAKFGEV HARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREVAEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVAHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP-GNNGF 167
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP  NNGF
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPENNNGF 167

[Close]

BLAST of CcUC05G097010 vs. ExPASy TrEMBL
Match: A0A6J1FQV3 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111446092 PE=4 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.0e-77
Identity = 153/171 (89.47%), Postives = 158/171 (92.40%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAA APRSLRRLITGTS+RTLPIIS AI DWEK E STNAF+SGRLFSS S SSF
Sbjct: 1   MALRSAAAVAPRSLRRLITGTSSRTLPIISQAIWDWEKLESSTNAFVSGRLFSSTSISSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSAQQRE PEPSTNLFVSGLSKRTTTEKL+EAFAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAQQREKPEPSTNLFVSGLSKRTTTEKLNEAFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNGFPNGSQ 172
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP ++  P  SQ
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHHSAPPHSQ 171

[Close]

BLAST of CcUC05G097010 vs. ExPASy TrEMBL
Match: A0A6J1INZ4 (organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxima OX=3661 GN=LOC111476943 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 6.7e-77
Identity = 150/167 (89.82%), Postives = 154/167 (92.22%), Query Frame = 0


Query: 1   MALRSAAAAAPRSLRRLITGTSTRTLPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSF 60
           MALRSAAAAAPRSLRRLITGTS RTLP+   AIHD EK  P+TNAF+SGRLFSSASTSSF
Sbjct: 1   MALRSAAAAAPRSLRRLITGTSARTLPMFLQAIHDCEKPTPNTNAFVSGRLFSSASTSSF 60

Query: 61  IPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSK 120
           IPPPLPPSA QRE PEPSTNLFVSGLSKRTTTEKLHE FAKFGEVVHARVVTDRVTGYSK
Sbjct: 61  IPPPLPPSAHQREQPEPSTNLFVSGLSKRTTTEKLHETFAKFGEVVHARVVTDRVTGYSK 120

Query: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNGFP 168
           GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPP +N  P
Sbjct: 121 GFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPEHNAVP 167

[Close]

BLAST of CcUC05G097010 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 158.3 bits (399), Expect = 5.5e-39
Identity = 85/133 (63.91%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 26  LPIISHAIHDWEKQEPSTNAFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSG 85
           LP IS A+     +  S    L     S+AS  SF+ P        R   EPSTNLFVSG
Sbjct: 7   LPAISRAV----TEVASAPVGLRRLFCSNASRFSFLSPQAESQTPARPQAEPSTNLFVSG 66

Query: 86  LSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFL 145
           LSKRTT+E L  AFA+FGEV  A+VVTDRV+GYSKGFGFV+YATLED+AKGI GMDGKFL
Sbjct: 67  LSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGIAGMDGKFL 126

Query: 146 DGWVIFAEYARPR 159
           DGWVIFAEYARPR
Sbjct: 127 DGWVIFAEYARPR 135

[Close]

BLAST of CcUC05G097010 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 111.3 bits (277), Expect = 7.7e-25
Identity = 63/116 (54.31%), Postives = 76/116 (65.52%), Query Frame = 0


Query: 45  AFLSGRLFSSASTSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGE 104
           AF+S      A +SS +    P    +R     S  LFVSGLS+ TT EKL +AFA FG+
Sbjct: 2   AFVSSFRRLVAGSSSLLSS--PSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFASFGQ 61

Query: 105 VVHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPP 161
           +V ARV+TDR +G SKGFGFV YAT+EDA K    M+ KFLDGWVIF + ARPR P
Sbjct: 62  LVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREP 115

[Close]

BLAST of CcUC05G097010 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-19
Identity = 53/113 (46.90%), Postives = 67/113 (59.29%), Query Frame = 0


Query: 47  LSGRLFSSA-STSSFIPPPLPPSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEV 106
           + G L SS  ST S   PP   S        P T L+VSGLS RTT + L + F +FG +
Sbjct: 51  IGGVLISSCLSTDSSSSPPSSSSG-------PKTKLYVSGLSFRTTEDTLRDTFEQFGNL 110

Query: 107 VHARVVTDRVTGYSKGFGFVKYATLEDAAKGIEGMDGKFLDGWVIFAEYARPR 159
           +H  +V D+V    KGF F++Y T E+A K I+GM GKFLDG VIF E A+ R
Sbjct: 111 IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQGMHGKFLDGRVIFVEEAKTR 156

[Close]

BLAST of CcUC05G097010 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.5e-15
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 0


Query: 78  STNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVKYATLEDAAKGI 137
           ++ LF+ GLS  TT + L EAF+K G+VV A++V DRV+  SKGFGFV +A+ ++A K +
Sbjct: 33  ASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKAL 92

Query: 138 EGMDGKFLDGWVIFAEYARPRPPPGNNG 166
              +G+ L+G  IF +YA+ +   G  G
Sbjct: 93  MEFNGQQLNGRTIFVDYAKAKQSLGGGG 120

[Close]

BLAST of CcUC05G097010 vs. TAIR 10
Match: AT5G61030.1 (glycine-rich RNA-binding protein 3 )

HSP 1 Score: 77.8 bits (190), Expect = 9.4e-15
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 0


Query: 67  PSAQQREMPEPSTNLFVSGLSKRTTTEKLHEAFAKFGEVVHARVVTDRVTGYSKGFGFVK 126
           PS  Q      S+ LF+ G++     + L EAF K+GEVV  RV+ DR TG S+GFGFV 
Sbjct: 28  PSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVT 87

Query: 127 YATLEDAAKGIEGMDGKFLDGWVIFAEYARPRPPPGNNG 166
           + + E A+  I+ +DG+ L G V+   YA  R   G  G
Sbjct: 88  FTSSEAASSAIQALDGRDLHGRVVKVNYANDRTSGGGFG 126

The following BLAST results are available for this feature:

BLAST of CcUC05G097010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896843.1	5.3e-84	95.35	organelle RRM domain-containing protein 2, mitochondrial [Benincasa hispida]	[more]
XP_008454580.1	1.1e-78	90.17	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
KAA0063485.1	1.9e-78	91.62	glycine-rich RNA-binding protein 4 [Cucumis melo var. makuwa] >TYK25992.1 glycin...	[more]
XP_004151968.1	1.9e-78	92.81	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KGN5...	[more]
XP_022940520.1	6.2e-77	89.47	organelle RRM domain-containing protein 2, mitochondrial-like [Cucurbita moschat...	[more]

BLAST of CcUC05G097010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	7.7e-38	63.91	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	2.3e-18	46.90	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	3.5e-14	44.32	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FNR1	1.3e-13	41.41	Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q43472	5.0e-13	40.63	Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare OX=4513 GN=blt801 PE=...	[more]

BLAST of CcUC05G097010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C066	5.5e-79	90.17	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A5D3DR24	9.4e-79	91.62	Glycine-rich RNA-binding protein 4 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A0A0LD10	9.4e-79	92.81	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G403980 PE=4 SV...	[more]
A0A6J1FQV3	3.0e-77	89.47	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita mosch...	[more]
A0A6J1INZ4	6.7e-77	89.82	organelle RRM domain-containing protein 2, mitochondrial-like OS=Cucurbita maxim...	[more]

BLAST of CcUC05G097010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54580.1	5.5e-39	63.91	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT2G37510.1	7.7e-25	54.31	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.7e-19	46.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	2.5e-15	44.32	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G61030.1	9.4e-15	41.41	glycine-rich RNA-binding protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 80..153 e-value: 2.6E-24 score: 96.8
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 81..147 e-value: 6.8E-20 score: 70.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 79..157 score: 18.444448
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 66..171 e-value: 5.0E-29 score: 103.2
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 50..167
None	No IPR available	PANTHER	PTHR15241:SF280	GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE	coord: 50..167
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 60..165

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G097010.1	CcUC05G097010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0080156	mitochondrial mRNA modification
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding