CcUC05G096980 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G096980
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	GRAS domain-containing protein
Location	CicolChr05: 23961765 .. 23962616 (+)
RNA-Seq Expression	CcUC05G096980
Synteny	CcUC05G096980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGAATTCAATTTATGTTTTCTTTTGTTTTCTTTTGGCCCATTTTGTTTGAAGTAACCAAAAATGCTTATGTTATTCTTGTCTCTTTGTTTGTTTCTCACAAGTTGATTTTTGTTCTTCTTCGGCAGGAGATTGATAACAACGATTTGTTGTTAGGTTTTTGTGAAGAAAAACATTGTTTAATCTTTTGTTGTGTTGGGGGATATTATTCTTTGCTACATGAGTTGATGCTAAGTGTATAGCATGGATTCTCATCAACTGTTTAGATTTGGGGTCAATAGTGCTAATCTTTCTTATATAAATTCTCATTCCTCTGTTTCATCTTTACCTAATACTTTGCTTGGACCCTTCAAATTCAACTTAGTAATTCTTCAGCGTTATCTTCGCTATTTTTGTTGCATTTTGAATCAGATTCATTTACGACAACTGTGGGTGATAGTCAGGATCAAAGATACTCCCCTAATAATCCCTCTAGACTTAGCCCTTATTATAATTCATCATTTGAAACGAGTAGCATTAAACAAATAGCCTCGTCGTATTTGGATCATTATGAGGATGAGGGTCGATAATTCTATTCAGGGTCAAATGCGTTTGTTTACGACGGATGCTTAACAGAGAACATAGGCTACGGTTTGAAACAATTGGAGAGTGTTTTGATGGGGCCGAATAATGAGGAAGTTGTGAGTAAGCCTGATGTTTCGTTTGGAAATACTAGCAGGCAACAAATGATAAGGCAGAGGTCCTACTCATGGAGGCAAGATCGACGTGGCGGGTCATATGTTGTTCCGTCTCAAACATCGCCAGTGTCGAGAAGCCAACAATATGAGGCAGTTCACTTGGAGAAACAATAG

mRNA sequence

TTGGGAATTCAATTTATGTTTTCTTTTGTTTTCTTTTGGCCCATTTTGTTTGAAGTAACCAAAAATGCTTATGTTATTCTTGTCTCTTTGTTTGTTTCTCACAAGTTGATTTTTGTTCTTCTTCGGCAGGAGATTGATAACAACGATTTGTTGTTAGGGTCAAATGCGTTTGTTTACGACGGATGCTTAACAGAGAACATAGGCTACGGTTTGAAACAATTGGAGAGTGTTTTGATGGGGCCGAATAATGAGGAAGTTGTGAGTAAGCCTGATGTTTCGTTTGGAAATACTAGCAGGCAACAAATGATAAGGCAGAGGTCCTACTCATGGAGGCAAGATCGACGTGGCGGGTCATATGTTGTTCCGTCTCAAACATCGCCAGTGTCGAGAAGCCAACAATATGAGGCAGTTCACTTGGAGAAACAATAG

Coding sequence (CDS)

TTGGGAATTCAATTTATGTTTTCTTTTGTTTTCTTTTGGCCCATTTTGTTTGAAGTAACCAAAAATGCTTATGTTATTCTTGTCTCTTTGTTTGTTTCTCACAAGTTGATTTTTGTTCTTCTTCGGCAGGAGATTGATAACAACGATTTGTTGTTAGGGTCAAATGCGTTTGTTTACGACGGATGCTTAACAGAGAACATAGGCTACGGTTTGAAACAATTGGAGAGTGTTTTGATGGGGCCGAATAATGAGGAAGTTGTGAGTAAGCCTGATGTTTCGTTTGGAAATACTAGCAGGCAACAAATGATAAGGCAGAGGTCCTACTCATGGAGGCAAGATCGACGTGGCGGGTCATATGTTGTTCCGTCTCAAACATCGCCAGTGTCGAGAAGCCAACAATATGAGGCAGTTCACTTGGAGAAACAATAG

Protein sequence

LGIQFMFSFVFFWPILFEVTKNAYVILVSLFVSHKLIFVLLRQEIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMIRQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ

Homology

[Close]

BLAST of CcUC05G096980 vs. NCBI nr
Match: TYK25996.1 (scarecrow-like protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-29
Identity = 73/99 (73.74%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           E ++  L  GSNAFVYDG   ENI Y LKQLESVLMGP+NEEVVSKPDVSFG + R QM+
Sbjct: 106 EDESRQLHSGSNAFVYDGYSAENISYTLKQLESVLMGPDNEEVVSKPDVSFGVSGRPQMM 165

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
            QRSYSW QDRRGGSY V SQ SPVSRSQQ EAVHL K+
Sbjct: 166 GQRSYSWSQDRRGGSYGVQSQASPVSRSQQSEAVHLGKR 204

[Close]

BLAST of CcUC05G096980 vs. NCBI nr
Match: XP_008454576.1 (PREDICTED: scarecrow-like protein 21 [Cucumis melo] >KAA0063490.1 scarecrow-like protein 21 [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 5.2e-29
Identity = 73/99 (73.74%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           E ++  L  GSNAFVYDG   ENI Y LKQLESVLMGP+NEEVVSKPDVSFG + R QM+
Sbjct: 106 EDESRQLHSGSNAFVYDGYSAENISYTLKQLESVLMGPDNEEVVSKPDVSFGVSGRPQMM 165

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
            QRSYSW QDRRGGSY V SQ SPVSRSQQ EAVHL K+
Sbjct: 166 GQRSYSWSQDRRGGSYGVQSQASPVSRSQQSEAVHLGKR 204

[Close]

BLAST of CcUC05G096980 vs. NCBI nr
Match: XP_004151967.1 (scarecrow-like protein 21 [Cucumis sativus] >KGN57951.1 hypothetical protein Csa_010100 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 4.4e-28
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           E ++  L   SNAFVYDGC TENI Y LKQLESVLMGP+NEEVV+KPDVSFG + R QM+
Sbjct: 106 EDESRQLYSRSNAFVYDGCSTENISYTLKQLESVLMGPDNEEVVNKPDVSFGVSGRPQMM 165

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
             RSYSW QDR GGSY V SQ SPVSRSQ+ EAVHL K+
Sbjct: 166 GPRSYSWSQDRHGGSYGVQSQASPVSRSQKSEAVHLGKR 204

[Close]

BLAST of CcUC05G096980 vs. NCBI nr
Match: XP_038899119.1 (scarecrow-like protein 21 [Benincasa hispida])

HSP 1 Score: 131.7 bits (330), Expect = 4.9e-27
Identity = 67/90 (74.44%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 53  GSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMIRQRSYSWRQ 112
           GSN F Y+GC  ENI Y LKQLESVLMGP+NEEVVSKPDVS   + R QM+ QRSYSW Q
Sbjct: 114 GSNVFAYNGCSAENISYALKQLESVLMGPDNEEVVSKPDVSLEMSGRPQMMGQRSYSWSQ 173

Query: 113 DRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
           DR G SYVV SQTSPVSRSQQ EAVHL K+
Sbjct: 174 DRHGRSYVVQSQTSPVSRSQQSEAVHLGKR 203

[Close]

BLAST of CcUC05G096980 vs. NCBI nr
Match: XP_022940516.1 (scarecrow-like protein 21 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 1.2e-25
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           +I +++L   SNAFVYDGC  ENI Y LKQLESVLMGP+NEEVVSKPD SFG++SR Q++
Sbjct: 95  QIASSNLDPVSNAFVYDGCSNENISYTLKQLESVLMGPDNEEVVSKPDASFGDSSRPQIM 154

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
            QRSYSW QDR+GG  +V SQT PVS SQ+ +AVHL K+
Sbjct: 155 GQRSYSWSQDRQGGLNLVQSQTLPVSVSQRSQAVHLGKR 193

[Close]

BLAST of CcUC05G096980 vs. ExPASy TrEMBL
Match: A0A5A7V8I4 (Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold977G00810 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 73/99 (73.74%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           E ++  L  GSNAFVYDG   ENI Y LKQLESVLMGP+NEEVVSKPDVSFG + R QM+
Sbjct: 106 EDESRQLHSGSNAFVYDGYSAENISYTLKQLESVLMGPDNEEVVSKPDVSFGVSGRPQMM 165

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
            QRSYSW QDRRGGSY V SQ SPVSRSQQ EAVHL K+
Sbjct: 166 GQRSYSWSQDRRGGSYGVQSQASPVSRSQQSEAVHLGKR 204

[Close]

BLAST of CcUC05G096980 vs. ExPASy TrEMBL
Match: A0A5D3DQQ1 (Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold668G00110 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 73/99 (73.74%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           E ++  L  GSNAFVYDG   ENI Y LKQLESVLMGP+NEEVVSKPDVSFG + R QM+
Sbjct: 106 EDESRQLHSGSNAFVYDGYSAENISYTLKQLESVLMGPDNEEVVSKPDVSFGVSGRPQMM 165

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
            QRSYSW QDRRGGSY V SQ SPVSRSQQ EAVHL K+
Sbjct: 166 GQRSYSWSQDRRGGSYGVQSQASPVSRSQQSEAVHLGKR 204

[Close]

BLAST of CcUC05G096980 vs. ExPASy TrEMBL
Match: A0A1S3BYH5 (scarecrow-like protein 21 OS=Cucumis melo OX=3656 GN=LOC103494964 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.5e-29
Identity = 73/99 (73.74%), Postives = 79/99 (79.80%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           E ++  L  GSNAFVYDG   ENI Y LKQLESVLMGP+NEEVVSKPDVSFG + R QM+
Sbjct: 106 EDESRQLHSGSNAFVYDGYSAENISYTLKQLESVLMGPDNEEVVSKPDVSFGVSGRPQMM 165

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
            QRSYSW QDRRGGSY V SQ SPVSRSQQ EAVHL K+
Sbjct: 166 GQRSYSWSQDRRGGSYGVQSQASPVSRSQQSEAVHLGKR 204

[Close]

BLAST of CcUC05G096980 vs. ExPASy TrEMBL
Match: A0A0A0LD17 (GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G405510 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.1e-28
Identity = 70/99 (70.71%), Postives = 78/99 (78.79%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           E ++  L   SNAFVYDGC TENI Y LKQLESVLMGP+NEEVV+KPDVSFG + R QM+
Sbjct: 106 EDESRQLYSRSNAFVYDGCSTENISYTLKQLESVLMGPDNEEVVNKPDVSFGVSGRPQMM 165

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
             RSYSW QDR GGSY V SQ SPVSRSQ+ EAVHL K+
Sbjct: 166 GPRSYSWSQDRHGGSYGVQSQASPVSRSQKSEAVHLGKR 204

[Close]

BLAST of CcUC05G096980 vs. ExPASy TrEMBL
Match: A0A6J1FIP5 (scarecrow-like protein 21 OS=Cucurbita moschata OX=3662 GN=LOC111446089 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.9e-26
Identity = 66/99 (66.67%), Postives = 80/99 (80.81%), Query Frame = 0


Query: 44  EIDNNDLLLGSNAFVYDGCLTENIGYGLKQLESVLMGPNNEEVVSKPDVSFGNTSRQQMI 103
           +I +++L   SNAFVYDGC  ENI Y LKQLESVLMGP+NEEVVSKPD SFG++SR Q++
Sbjct: 95  QIASSNLDPVSNAFVYDGCSNENISYTLKQLESVLMGPDNEEVVSKPDASFGDSSRPQIM 154

Query: 104 RQRSYSWRQDRRGGSYVVPSQTSPVSRSQQYEAVHLEKQ 143
            QRSYSW QDR+GG  +V SQT PVS SQ+ +AVHL K+
Sbjct: 155 GQRSYSWSQDRQGGLNLVQSQTLPVSVSQRSQAVHLGKR 193

The following BLAST results are available for this feature:

BLAST of CcUC05G096980 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK25996.1	5.2e-29	73.74	scarecrow-like protein 21 [Cucumis melo var. makuwa]	[more]
XP_008454576.1	5.2e-29	73.74	PREDICTED: scarecrow-like protein 21 [Cucumis melo] >KAA0063490.1 scarecrow-like...	[more]
XP_004151967.1	4.4e-28	70.71	scarecrow-like protein 21 [Cucumis sativus] >KGN57951.1 hypothetical protein Csa...	[more]
XP_038899119.1	4.9e-27	74.44	scarecrow-like protein 21 [Benincasa hispida]	[more]
XP_022940516.1	1.2e-25	66.67	scarecrow-like protein 21 [Cucurbita moschata]	[more]

BLAST of CcUC05G096980 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC05G096980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V8I4	2.5e-29	73.74	Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3DQQ1	2.5e-29	73.74	Scarecrow-like protein 21 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BYH5	2.5e-29	73.74	scarecrow-like protein 21 OS=Cucumis melo OX=3656 GN=LOC103494964 PE=3 SV=1	[more]
A0A0A0LD17	2.1e-28	70.71	GRAS domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G405510 PE=3 S...	[more]
A0A6J1FIP5	5.9e-26	66.67	scarecrow-like protein 21 OS=Cucurbita moschata OX=3662 GN=LOC111446089 PE=3 SV=...	[more]

BLAST of CcUC05G096980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G096980.1	CcUC05G096980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding