CcUC05G095940 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G095940
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 19853975 .. 19855733 (+)
RNA-Seq ExpressionCcUC05G095940
SyntenyCcUC05G095940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAATGGCTATAAGGGTTTTTCTTTCTTTTTTCCTTTTGGTTTTTCCTTTTTCTTAGTGGGTTTTTGTATTGTATTGTATAATTTCAAAGTGAGAACAAAAAGAAAAAAAAAAGAAAAAAAAAAGAAAAAAAGAGATACCTGCCTGAGAGGAAATTCTATAGGGATCTGTATTTGGTTTGCATTCTCCTTGAGAATTGCAATCTTTCAAACTCTTCTTCACATCCCAGGTTATTTTTTGATTCTTTGAAAGCTTTTCAAACCTTTGGATGTATAGAACATGGAAGTTTTTTTTTGTTTTTTTGTTTTTTGTTTGTTCCCTTTCTTTCTTAATGTTTTTTGTATCTTATTTATTGTTGTTTCTTTTTTGCTTTTGCAGGTGTGATTGTATACAACTGAAAGCAGCTTGGCTTGAGCTTAACTACATTTTTTCTGTTTGTTTCTCTATTCAAAAAGGTGTTTTGATCATATTGTAAGGCAACTTTACTTGTTCAGTTCTTCTCTAGTTCTTGCTGGAATGGTGAACAATTGGTTTGTGAAATTTGAGATAGAATTTTTTTTCCCAGTCCCTAAGTTTTCAGTCTTCTGCATAATCGAAGGAGCTATTAGTTTGTTCTTTGCATTTCACCTCTTATAAACAACATTGAGTTTTGAATCTCAAACTGCTTGCTTTGGTTTACAATCTTTGAAATTTTCCTATTCTTGCCCGAGTGCACTTACTGTCGGAGGAATGATTTAGGATGTTCACTTACTGATGGTCATCGGGCTAGGTAAGCATCTTAATGCATTCATTGATCTTTTAATTCAAACAGTTAACAGAAAGTGTATTTATGCTATATATTAATAGTCATCCACACCTAAAATCCCATTGTTTTTTCGTTAATTTGAAAGACGATTGTAACACTTTGTAGCTTTAGGTTTACATTGTACATTGAGACAGATATCTCAGGTCTGATTGAAGCATTTAAGATCTATCCGCACTCTAGTCATTTTGGCATCTTTTTCTGCTACTTTATTGTGCACATTTTCTGATATCTGCTACTGAATGTGCTCGTTTCAATGAGCTTATATACTTGTTTGAGGCGGTATACGATCGAGTTCTTCTATGGATATCTTATTTGGTTCTAGTGCAGCTCCTGAGCTCTCCTGTTGTGGCATTTGAGTTCTATAACAATTGTTTACCAAGCATCCATTTGCAGCTTGCATTTGACATCAATGCTGAGGAGAACAAGAACCTTTGGAGATGTCTCTATTTTCTCATATGCCTGTTTGTATGAGCTTTACATGGGTAATGCTGGTTTTACTTCTCTGTTAGTCGGGTCAGGAATTCGATCTCCTATGCTTGCACGTTATCCACTCTGTTTGCATATGCTTGACAAAACTTTAAGATATGACAGTAAACGAGCATGTATCTTTTCTCGAGTCACCTCTGTTAGATCTGGCATATCATTTATACCCAGTTATAGTCGGACCGCTGAGCCTATCATGTTATAAGATCAAAATGTGTGCTAAGTGAGCCGAGGTTGGAGTTTCTTGATGAATGCTGCCTTCAATTTTCTCAAGCAAAAAGGAAAGAGCATGGAGTTAATTGTTGCCTTTTCTTTAGGAGTTGAAAACAGTCTCAATTCTGATGTTAGTTAAAATTTGGGTAATGAAGTTTCTAATAATTCTATAAGACTCTGCAGGGAAAGGGCCAAAGCCAAAACAGGGACTCGGTGTCCATTTTGTTGCCATACACAAAGGAATTTGCTGTTTGA

mRNA sequence

ATGGCAAATGGCTATAAGGGTTTTTCTTTCTTTTTTCCTTTTGGTTTTTCCTTTTTCTTAGTGGGTTTTTGTATTGTATTGTGTGATTGTATACAACTGAAAGCAGCTTGGCTTGAGCTTAACTACATTTTTTCTGTTTGTTTCTCTATTCAAAAAGTTCTTGCTGGAATGGTGAACAATTGGTTTGTGAAATTTGAGATAGAATTTTTTTTCCCAGTCCCTAACTTGCATTTGACATCAATGCTGAGGAGAACAAGAACCTTTGGAGATGTCTCTATTTTCTCATATGCCTGTTTGTATGAGCTTTACATGGGTAATGCTGGTTTTACTTCTCTGTTAGTCGGGTCAGGAATTCGATCTCCTATGCTTGCACGTTATCCACTCTGTTTGCATATGCTTGACAAAACTTTAAGATATGACAGTAAACGAGCATGTATCTTTTCTCGAGTCACCTCTGGAAAGGGCCAAAGCCAAAACAGGGACTCGGTGTCCATTTTGTTGCCATACACAAAGGAATTTGCTGTTTGA

Coding sequence (CDS)

ATGGCAAATGGCTATAAGGGTTTTTCTTTCTTTTTTCCTTTTGGTTTTTCCTTTTTCTTAGTGGGTTTTTGTATTGTATTGTGTGATTGTATACAACTGAAAGCAGCTTGGCTTGAGCTTAACTACATTTTTTCTGTTTGTTTCTCTATTCAAAAAGTTCTTGCTGGAATGGTGAACAATTGGTTTGTGAAATTTGAGATAGAATTTTTTTTCCCAGTCCCTAACTTGCATTTGACATCAATGCTGAGGAGAACAAGAACCTTTGGAGATGTCTCTATTTTCTCATATGCCTGTTTGTATGAGCTTTACATGGGTAATGCTGGTTTTACTTCTCTGTTAGTCGGGTCAGGAATTCGATCTCCTATGCTTGCACGTTATCCACTCTGTTTGCATATGCTTGACAAAACTTTAAGATATGACAGTAAACGAGCATGTATCTTTTCTCGAGTCACCTCTGGAAAGGGCCAAAGCCAAAACAGGGACTCGGTGTCCATTTTGTTGCCATACACAAAGGAATTTGCTGTTTGA

Protein sequence

MANGYKGFSFFFPFGFSFFLVGFCIVLCDCIQLKAAWLELNYIFSVCFSIQKVLAGMVNNWFVKFEIEFFFPVPNLHLTSMLRRTRTFGDVSIFSYACLYELYMGNAGFTSLLVGSGIRSPMLARYPLCLHMLDKTLRYDSKRACIFSRVTSGKGQSQNRDSVSILLPYTKEFAV
Homology
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BLAST of CcUC05G095940 vs. NCBI nr
Match: KAG7017839.1 (hypothetical protein SDJN02_19705, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 29/34 (85.29%), Postives = 32/34 (94.12%), Query Frame = 0 

Query: 21 VGFCIVLCDCIQLKAAWLELNYIFSVCFSIQKVL 55
          +G CIVLC+CIQLKAAWLELN+IFSVCFSIQK L
Sbjct: 1  MGLCIVLCECIQLKAAWLELNFIFSVCFSIQKEL 34

The following BLAST results are available for this feature:
BLAST of CcUC05G095940 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7017839.11.2e-0685.29hypothetical protein SDJN02_19705, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CcUC05G095940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G095940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G095940 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G095940.1CcUC05G095940.1mRNA