CcUC05G093060 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G093060
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr05: 11019451 .. 11020062 (+)
RNA-Seq ExpressionCcUC05G093060
SyntenyCcUC05G093060
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAATTTCATCCCAAAATTATTGTTATTGATGAATAAGAAGTCAAAATTCTTTACAAAAACCTGCGGAGGAACAAACCCAGTGAAGAAATTGAATCTGATATCGAAGAACGACAGATCAGTGACACTCAAAATGGCAACTGGGAAAGGACCCGACAGTTGGTTGTTGCTTAAATCAAGCTCATAGAGATATTTGAGCGATGCAATTTTGGGAGTGATTGTGCCAGAAAAGTTGTTGGAGTTGGCATGGAAGATGGCAAGGTCAGGGAGGCCATCGATGAAGCCGTCAAGCGTCGGGGCAGTGAGTTGGAAGCCATTGAAATCGATACCTGCGATGGCAACAGCGGATTTGTTGTCCGGGGGGTTGTCGCAGAAGAAGCCTTTGTACTTACAGATATCAGAGCCAACCCATGTTTGTGTGATGCCCAATGGGTCAGAAGTGATGAGGGCTTTGAAGGTCTGAATGATGGGGTACACCACGGCCAGTCGTTGGTCTAAGAATCTGAGGCATTGGCAAGTTTTTGGCGGTGGCGGTAGCGGTAGCGGTGGTGGGGATTCCGGCGGTGGCGGCGGCAGCGGAGGTGGGGGACATCTGGTTGAGTATACATAG

mRNA sequence

ATGGTCAAAATTCTTTACAAAAACCTGCGGAGGAACAAACCCAGTGAAGAAATTGAATCTGATATCGAAGAACGACAGATCAGTGACACTCAAAATGGCAACTGGGAAAGGACCCGACAGTTGCTCATAGAGATATTTGAGCGATGCAATTTTGGGAGTGATTGTGCCAGAAAAGTTGTTGGAGTTGGCATGGAAGATGGCAAGGTCAGGGAGGCCATCGATGAAGCCGTCAAGCGTCGGGGCAGTGAGTTGGAAGCCATTGAAATCGATACCTGCGATGGCAACAGCGGATTTGTTGTCCGGGGGGTTGTCGCAGAAGAAGCCTTTGTACTTACAGATATCAGAGCCAACCCATGTTTGTGTGATGCCCAATGGGTCAGAAGTGATGAGGGCTTTGAAGGTCTGAATGATGGGGTACACCACGGCCAGTCGTTGAATCTGAGGCATTGGCAAGTTTTTGGCGGTGGCGGTAGCGGTAGCGGTGGTGGGGATTCCGGCGGTGGCGGCGGCAGCGGAGGTGGGGGACATCTGGTTGAGTATACATAG

Coding sequence (CDS)

ATGGTCAAAATTCTTTACAAAAACCTGCGGAGGAACAAACCCAGTGAAGAAATTGAATCTGATATCGAAGAACGACAGATCAGTGACACTCAAAATGGCAACTGGGAAAGGACCCGACAGTTGCTCATAGAGATATTTGAGCGATGCAATTTTGGGAGTGATTGTGCCAGAAAAGTTGTTGGAGTTGGCATGGAAGATGGCAAGGTCAGGGAGGCCATCGATGAAGCCGTCAAGCGTCGGGGCAGTGAGTTGGAAGCCATTGAAATCGATACCTGCGATGGCAACAGCGGATTTGTTGTCCGGGGGGTTGTCGCAGAAGAAGCCTTTGTACTTACAGATATCAGAGCCAACCCATGTTTGTGTGATGCCCAATGGGTCAGAAGTGATGAGGGCTTTGAAGGTCTGAATGATGGGGTACACCACGGCCAGTCGTTGAATCTGAGGCATTGGCAAGTTTTTGGCGGTGGCGGTAGCGGTAGCGGTGGTGGGGATTCCGGCGGTGGCGGCGGCAGCGGAGGTGGGGGACATCTGGTTGAGTATACATAG

Protein sequence

MVKILYKNLRRNKPSEEIESDIEERQISDTQNGNWERTRQLLIEIFERCNFGSDCARKVVGVGMEDGKVREAIDEAVKRRGSELEAIEIDTCDGNSGFVVRGVVAEEAFVLTDIRANPCLCDAQWVRSDEGFEGLNDGVHHGQSLNLRHWQVFGGGGSGSGGGDSGGGGGSGGGGHLVEYT
Homology
[Close]
BLAST of CcUC05G093060 vs. NCBI nr
Match: OQU81910.1 (hypothetical protein SORBI_3006G139501 [Sorghum bicolor])

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 45/148 (30.41%), Postives = 69/148 (46.62%), Query Frame = 0 

Query: 7   KNLRRNKPSEEIESDIEERQISDTQNGNWERTRQ-------LLIEIFERCNFGSDCARKV 66
           ++ RR  P E +E D++E  + + Q+   ER R+        L+E+ +        A +V
Sbjct: 225 EDARRELPVEAVEPDVDEGGVGEAQHVRRERCRRELVVAQVQLVEVLQAAERRHGAA-EV 284

Query: 67  VGVGMEDGKVREAIDEAVKRRGSELEAIEIDTCDGNSGFVVRGVVAEEAFVLTDIRANPC 126
           VGVG+E  +VRE +DEA++    +  A+E+D  DG    V R +  E       +RA P 
Sbjct: 285 VGVGVEQRQVREVVDEALQGVRPQHVAVEVDGRDGPVRHVGRPLAEEALVAAAQVRAAPA 344

Query: 127 LCDAQWVRSDEGFEGLNDGVHHGQSLNL 148
             D   V      E L+  V   Q L L
Sbjct: 345 PGDVHRVARHRAPELLDHQVRPVQPLVL 371

[Close]
BLAST of CcUC05G093060 vs. ExPASy TrEMBL
Match: A0A1Z5RDS7 (Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G139501 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 5.6e-05
Identity = 45/148 (30.41%), Postives = 69/148 (46.62%), Query Frame = 0 

Query: 7   KNLRRNKPSEEIESDIEERQISDTQNGNWERTRQ-------LLIEIFERCNFGSDCARKV 66
           ++ RR  P E +E D++E  + + Q+   ER R+        L+E+ +        A +V
Sbjct: 225 EDARRELPVEAVEPDVDEGGVGEAQHVRRERCRRELVVAQVQLVEVLQAAERRHGAA-EV 284

Query: 67  VGVGMEDGKVREAIDEAVKRRGSELEAIEIDTCDGNSGFVVRGVVAEEAFVLTDIRANPC 126
           VGVG+E  +VRE +DEA++    +  A+E+D  DG    V R +  E       +RA P 
Sbjct: 285 VGVGVEQRQVREVVDEALQGVRPQHVAVEVDGRDGPVRHVGRPLAEEALVAAAQVRAAPA 344

Query: 127 LCDAQWVRSDEGFEGLNDGVHHGQSLNL 148
             D   V      E L+  V   Q L L
Sbjct: 345 PGDVHRVARHRAPELLDHQVRPVQPLVL 371

The following BLAST results are available for this feature:
BLAST of CcUC05G093060 vs. NCBI nr
Match NameE-valueIdentityDescription
OQU81910.11.1e-0430.41hypothetical protein SORBI_3006G139501 [Sorghum bicolor][more]
BLAST of CcUC05G093060 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G093060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1Z5RDS75.6e-0530.41Uncharacterized protein OS=Sorghum bicolor OX=4558 GN=SORBI_3006G139501 PE=4 SV=... [more]
BLAST of CcUC05G093060 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G093060.1CcUC05G093060.1mRNA