CcUC05G090900 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G090900
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DNA-directed RNA polymerase III subunit RPC3
Location	CicolChr05: 8525542 .. 8532705 (+)
RNA-Seq Expression	CcUC05G090900
Synteny	CcUC05G090900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAGAGAAAAGGGGCAGCGGCTACATATACACTTGGAGAGAGAGAGTGTGTGAAATTTCTGCAGAGGGAGAAAAGGAAGCCGCCGGTGTGGGTCTCCCCATCCATCTGCTTCGGCGTCCGGTTCGCTGTTACGTTACCAGCGTGCGTATTCTCCGATTTGCAGGGGTATTTCAGTCGTGTGGGTCTCCGATTTAGAGAGGGTGTTTGTCCGGTGTTTGGGTCTCGGTTTCAGAGGCCGTATTTGGTGCGTGGTCTCCCGGTAATCAGTGTGAGTTGGTAGACGTCGGCGATTGGGTCTCGGTCAAGAGGCGATTGGGTCCGCTTCGCTGTTATTGTTATTTGGGTATATTGAACTATAAATTGTTGGTCGGTACTTAAGGATACTTGATGCCATAGACGCACAGCAATCTTAACGAAGGCAACCATGGTGATGACTCAGTACGGCATCAAATATGCCGTCCACATTATCACCGCACACTTCGGAAATCTCGTCGCTGTATGCTTTTCTTTTTTAATCTTTGCCTCAGAAATTATCAGCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGTATTATCGTTGTTCATTATTATTTTTTGTGCATTGACAGAAAGTGTGCGAAACCCTGCTCCGAAAGGGACCTCTAACGCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAGGTAGAGAGTTCTGGGTCTATATTTTTTGGTAAAGCTCATTAAATTAAAGCTTCGTTATTATTGACAAAAAGGCACTCACGGGCTAAGAGAGCAACAAACCCTTTATCTTAAATTGATTCTGGACTTTAGAATTGAGTTTCACGTAACTGGGATTTTATAGTGTTTAGAAAGAATTTGTGTATGCTCAGCGACTCAGTATAAGCCCATTCGTTCCTTAAATTTATTAGCTTTGAAAGGAAACTATTATATGGAATCACATTGACACAATATTGGATGAATGGGGTTTTGAAAAGGTAGTTGTATTCTCGAAAAGCACACCACTCGTGTACATATTAAGCTTCTTATCATTGTTATTGTAATTGCTTATATAGGTGAGTTTGGAGACGCACCCAAGGCTGATACACAATACTTGGCATTATTTAGTAATATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTCGAGAAAGATAAAGATGTTAGTTCATTTAATCACACTGGATAAATATGTCTTAGTGAGAATTTTATGCCTAAGTTAATTTATTTTCTCAACTTATGTTTCTGTTTGTAGTGTGAAGGACTTCTCGAGGGTCTGCTGCAGAATGGCAGGCTTTCAATGGAACAAATGGTTGAAAGAGCAGAGTCAAGTAAAAGTGCAGGCAAGTTTGTTACCTGGTACTTTTATTTGCATGTTATTATTTTCTTCTATCTGCAGTATTATTTAATATGCTACTTTCTCTCAGGATCAAAAAATTATGTATTGATTTCAATTTTTAAATGGAACGTTATCATTCATTATTGGGAGATTTTTAGATGGACAGATCCCAGAGATCATATTCTTTATAATTCATGTTGGTCTCAATATCAGATTTTTTTATTCAAGTAAGAAGCTCATTTCTTTGAACAAGTGAAATTACTAAGGAGGTGGGAAGAATGTCAAAGCTTTTCTTTAACTACCCTATTTCTCTTATTCTAGCTAATTGGAAATTTTTGTTACCCCTTGACTTCGTTGGGGTTTCATTTATCAATTAAATTTCCATTTGCTTCAAAATAAAAGAAAAACTTCTTTTCTATTTCATCTTCATCTTGTTTAGAAGAGTAAAAATTGGTGTTTATTTCCTAAAGGCCAAAACTGTGATAGGATTTGTTGAACTTACTCAACAAGCACATTAATGAAGAAATTAGCATAATTTAGAAGGTGGCTCTTGCACTGAGAAAGTATTTGTAACACGTATTTGCTCATAATACATCTATTATTACAAATGTTTGGTTTCTGAAGCATTGTTTCTGCATTTATAGGAAACCGTCCAATCCCGGATGTTGTACATGACAGTCTATCTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCAAAGTTGAAGAACAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGGTAACTGCATGTCCGAAACTTTTCATGCAATATGGTGCCAACTGAGTCATTAAATGTATTCATTACAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGAGTCAGCACGTCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACTAACACAGAAGCTGGAAAGAGTGAACATTATTCACAAATATCTGGACAGAAGGTATATATGAGAATGTTGTATCAAATTACCAAGTTGATACACGTTTAGTATTTGCTCATAATTTTTCTGTAGCGCAAGCACGATGATCTGGAGACGGTGCAAGATTCTGGAGATGCAGGTGGTATTATTCTTTGGCGTGCCAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGTTAGTATTACTTTATGTTTTATCCTTAGGAATTTTCTTACCTTCTATCTAGGTGACATGAAATACACTATTACAGGGAATGCCACGCCCGTTTACTTGCATTTACATTAATGATGGGAAAGAAAATGGGGCATGACAAACATGAGCAATTTGCTCACTTGAAACCAATTGAGTACTTCAGCGTGCAATTTTTTCAAGGGATACTGATATTATTATTATTATAATTATTTTTTTTATTTATAATATATGTAAACCATAAAAAGAAGCACAATCTAAAAGCCTTAGGAATGACTTATGGGGACCCTGAGCCTGCAAAGGAGGAAGCAAACCGAAGGCCCCAATCTAAAAAAATGAGGAGAGAAGGAATATTGCAATAGGATTTGTGTAAAGCACTTGATTTATTGGAGGTTGTATACCCAATGTGGTCACAAGTCGGTGGTTGATACTTGCTATTTTTATACAGGAATGAGAGAGAAAAATAGTATTTAAAATCACAAATCCTATTATTGACTTATTCGAAATCAAAATATCTCGTTCTATGTTTCATTTAGCTTCTTTGTTTGATATATTCATTCAAGTAGTAATTGCATCAATATCTTTATATGGCTATAGGCTTGCATTGAACATGTTAGATCACAGTTTGATGACGGAGTGGTAAATGTATTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGGTACAACCTAATGCTTTTGTAGATTCCTAAAAGAGTTTAGTCATGCAAGTGTTTGATCTTGATGCAGATTGATCCTTTTTTTTTTTTCCTTTTCTTTTCTCAATATTCGTGAGTGTCTAGGTCAGCTTACGTGCACCTCGACTAATCTCACAGGACAACCTGTCTGACCTTACAACATTTGGGTGTCAAGGAAACTCGTGGGATATTAAATCTTAGGTAGGGGGTCATCATGGATTGAACCCATGACCTCTTAGCTATTTATTGAGATTATCTCATTTTCTATCGCTAGGCCAACCCATGATGGTTTGGTGCACATTGATCGTATAAACACAAAAACCTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTGGGACTAGAATTCAAGGAATTGTTTGGGCACTCTTTTGAAGACCACTTTCTTCTTTTAAAAATAAAAATATTAGTGAAAACAAGTTTGCTTAATGGCTTTATTCAAGTTGTTTTCTAATGTTTTCTTTTAGTTTGTTTTTAAAGGTGGCTTGGTTCTTCAAACAATTGAATTGAAATTATCTTTTAGTTGTTTTCTAATGTTTTCTTTTAGTTTGTTTTTAAAGGTGACTTGATACTTCCAACAATTGAAGTTATCTTTTTCTAAAACTAGTCTTGTAAATGATGATTAAGTACAAAATAAGCTTGATCTTTATGAACCTTCCCCTTACAATTTTAAAATTGAAAGCAGAAAGCTGTTTCCAGAATCGTTTTCAGGATTTATATTTGATGTTTTTTCCCCTCTTGGCATTAGTTCATTTACTTCAATGATGATCTTTACAAAGCGTACAGTAGTTGGTAAAGCAAAATGACATCTCTGGGGCACTTTATCAGTATAATTAACCAGCAAGCACGTTATCTTTTGTGCTATTTTGCTGTATATTTCTCCTTCCACCTCTTTTGGATGCATGGTTTATACATTTTGTAGAGACTAAATCATGAAAGATAGGGCTCAAGAAATATATAATAAAATGATTCATGATTTGAAAAATATCATAAAAATGTGTTTCCTTTATCACCTATGTACACTTTGTTGTCTCCTGTTTTAAAGTTTCAATTGTTTGCAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCCGCATTGGGTTGTCCGGGGATGGATGATTATAAAATTAGTATGTTCACCCACTGTTGAGCTAAGTCTTCCCAACATGCATACTTTTCACACTTCTGAGTCAGTTTAAGCTTTTCTAAAATCATTTGCTTGCACAGATTTGCGGAAGATCATTGAACAAGCTCAAATTGATGAGGTCTCTCCCTCCCACTCATTCATTTAGTGAAAAGTACACCTTTGTTATCTAAGACTTGAAAAATGACGTGTCTTGGTTCCTAAATTCTATAAAATAAAAATTGTCTTATTACTTGTTGCAATTAGTAGATTGAAATCTCTGATATGAAGCTAGTTTTTTGTCAATATCAACTTTGATTGAGTAACAATGAAAGAATATGCGGACATACAAAAAAAACCAAGCTTACAAAAAGGGAACCCATTAATTAGGTCATTGAAATCGAATCCCAGAGGGCAATACTTCTCCTAGTTTGCTAGGGTGCACAAATCTTCATTGATCCCTTGCACTTGCAGTCTGCAGAGATTGATTAATCTATAGTTAACTAACTTGAATTCTCCTCATTACAGGTTGAATCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTCCTGTCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGGTAAGTAGTTTTCTGTTGGTTACACTCAAGGTTGTCCAACTACCAGACAAAACACATCCATTTGCAATGTACCGTTCATTTTATCTGAAAATATATATAATTTACCCGTGAATTCAACTCAAATACATAATTTGGCTGTTGATTTTAAAATTTAAAGTTGAACAAAAAAGGAGACAAAAACTAATAAAATAATGGGTGGGTTGGCCTTGCGTCAAATTAGTTGCCTTGTTGTTTCAATCTAGTGAAGATTACTAGGAACTGTTATTTTTATTTAGTATTTTGAAATTGGCTATTTTTTATTTTCTTTTTTGTTTAATTATTTTACAGATATACCATTTCTTTTTCTGTAGATTTCCGATAGTTCATTTGTTGATAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGGTAAACATCTTTGCTTTGTATGCGTGTGTTTTTGCGTCCGAATTCCTATATTTACGTATCATGGAGTAAGGATGATACCATACACTTTTTTCCCAATGAGAAACATGACATTTTTCATTGATAGAATCAAAAAACAAAAAGTGTGACCATGGAGGAAGCAAAAATACCATAATGAATTTCGTGTTTGAGTCTGATGGCATTCGACATATTGGTTTTCACTATATCAATTAAATACTCAAGATAATTGTGTGTAATTAGACATGGATGTAACTAGAAAAAACATTAAAAGATTAGGTAATGTTTAATCAGGTAAAATAATGTTTTCTTATCAGAATTGGTTGTAGTTTTATTAGCAATTCTGCACATCTTTGATTTGAATTTTCTTTTTAGCTTGTCTTTGTTTCTTCATTTCTATGTATCATCTTGTACCTACACTGGCTAGGCTAGCCATGTCTTTTACCGCTTGAACGATTTACATTGTTAGTCTTTTTGGGGGCATTTTGGGCATCATAGCAAAACAATTTTATCTTTGTTGCAGAAAGTAGCTCTAACAGTACCTAGGCATTCCCTATGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAAGAAGACAAAGAGGTTAATGTGCACAACATTCGCTTATTTTGTAATATGCAATTGTAATGACGTTAGGTTCTTATAGACTTCCTTAACGGAGAAATCAACCAAGTATGTTTTTGATCACTGATCTGGTAACTTTATCCTCCGTCATCTTATTCGCCTTATTCTTCTAATTCATACTAGAAGAAATAAACTCATTTCCTTTTGATGTGGTGTGGTGTACCATAGCAGAAAGTTTTAGTATATGCAAAACGTGGCTTGCTTGCCAACTATTATCAGTAACGTCTATAAGAAGCCCAGTTTTGTGGTTGAATGACAGGATACTTGTATGTGAACTGGAGTCGAAACTCGTTTTGTATAATCCACCCCTTTAAACTTATTCTCGTCGTTTGTAGTTTGATTAATTTTGGCTTTTGCCTGTGCCCTTACTTTAAACAGTAGTATTGGAATGAAGGTCTCATTCTGGTGATCATTCCTTCCACATGCCTTCTCACTATGTGTATGCTGTGTATGTGGCCAAGTTCAAATACTGACTTCTTGCTGTGGCAACTATTTTCCAGCTGCTGAGTCTTCCACCAGATAATCGCAACGAACCGCTCAAGAAAAGATTTAATCGTTTGAGGAATGTCAGAGGACTCCTGCAGTCGTCACTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTAAATGAAGGATTTAGATTAATGGCTCATTGAGGAGTGTATATGGAGGAAGCTTCTTTCAAACATCAGAAGAAAATTGTGGTTAGCAGTGTTTTTTTTTTTCCTTCTATTAGTATACAGGAATTTCATTGTCCTTATAAATGTTGTTTCGTTGAGGTTAATTATGGATTATGGGATATGGCTCTTCCTAATGTAC

mRNA sequence

TGGAGAGAAAAGGGGCAGCGGCTACATATACACTTGGAGAGAGAGAGTGTGTGAAATTTCTGCAGAGGGAGAAAAGGAAGCCGCCGGTGTGGGTCTCCCCATCCATCTGCTTCGGCGTCCGGTTCGCTGTTACGTTACCAGCGTGCGTATTCTCCGATTTGCAGGGGTATTTCAGTCGTGTGGGTCTCCGATTTAGAGAGGGTGTTTGTCCGGTGTTTGGGTCTCGGTTTCAGAGGCCGTATTTGGTGCGTGGTCTCCCGGTAATCAGTGTGAGTTGGTAGACGTCGGCGATTGGGTCTCGGTCAAGAGGCGATTGGGTCCGCTTCGCTGTTATTGTTATTTGGGTATATTGAACTATAAATTGTTGGTCGGTACTTAAGGATACTTGATGCCATAGACGCACAGCAATCTTAACGAAGGCAACCATGGTGATGACTCAGTACGGCATCAAATATGCCGTCCACATTATCACCGCACACTTCGGAAATCTCGTCGCTAAAGTGTGCGAAACCCTGCTCCGAAAGGGACCTCTAACGCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGCTGATACACAATACTTGGCATTATTTAGTAATATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTCGAGAAAGATAAAGATTGTGAAGGACTTCTCGAGGGTCTGCTGCAGAATGGCAGGCTTTCAATGGAACAAATGGTTGAAAGAGCAGAGTCAAGTAAAAGTGCAGGCAAGTTTGTTACCTGCATTGTTTCTGCATTTATAGGAAACCGTCCAATCCCGGATGTTGTACATGACAGTCTATCTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCAAAGTTGAAGAACAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGAGTCAGCACGTCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACTAACACAGAAGCTGGAAAGAGTGAACATTATTCACAAATATCTGGACAGAAGCGCAAGCACGATGATCTGGAGACGGTGCAAGATTCTGGAGATGCAGGTGGTATTATTCTTTGGCGTGCCAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTTGATGACGGAGTGGTAAATGTATTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCCGCATTGGGTTGTCCGGGGATGGATGATTATAAAATTAATTTGCGGAAGATCATTGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTCCTGTCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCATTTGTTGATAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGGCATTCCCTATGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAAGAAGACAAAGAGCTGCTGAGTCTTCCACCAGATAATCGCAACGAACCGCTCAAGAAAAGATTTAATCGTTTGAGGAATGTCAGAGGACTCCTGCAGTCGTCACTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTAAATGAAGGATTTAGATTAATGGCTCATTGAGGAGTGTATATGGAGGAAGCTTCTTTCAAACATCAGAAGAAAATTGTGGTTAGCAGTGTTTTTTTTTTTCCTTCTATTAGTATACAGGAATTTCATTGTCCTTATAAATGTTGTTTCGTTGAGGTTAATTATGGATTATGGGATATGGCTCTTCCTAATGTAC

Coding sequence (CDS)

ATGGTGATGACTCAGTACGGCATCAAATATGCCGTCCACATTATCACCGCACACTTCGGAAATCTCGTCGCTAAAGTGTGCGAAACCCTGCTCCGAAAGGGACCTCTAACGCTGAGACTTCTTATACGATTCACAGAACTTACCTCATCACAGGTCAACAACTCCCTTCTTATTCTCATCCAACATAATTGCGTTCAAGCCTTCACTGCAGTGACAGAAGGTGAGTTTGGAGACGCACCCAAGGCTGATACACAATACTTGGCATTATTTAGTAATATACTTCATCGTATGAGATTTTCCAAATTCCTGGCAATTGCTTCGGAAAAGCTCGAGAAAGATAAAGATTGTGAAGGACTTCTCGAGGGTCTGCTGCAGAATGGCAGGCTTTCAATGGAACAAATGGTTGAAAGAGCAGAGTCAAGTAAAAGTGCAGGCAAGTTTGTTACCTGCATTGTTTCTGCATTTATAGGAAACCGTCCAATCCCGGATGTTGTACATGACAGTCTATCTAAACTTTTGACTGCCCATTTTGTTGAACGCTGTCCAGCCCCTGAACCAACTCTTTCACCCAAAGTTGAAGAACAGCCTCCTCCTAGAAAAAGAGGTGCTAAGGCTGCCAAGATATCTGAGGTGCCAGAGACCTTAGAACAACGTCTTGTAGAGTCAGCACGTCCAATGGAAGTTCTAAGATTTTCAATGGGTGATACTAACACAGAAGCTGGAAAGAGTGAACATTATTCACAAATATCTGGACAGAAGCGCAAGCACGATGATCTGGAGACGGTGCAAGATTCTGGAGATGCAGGTGGTATTATTCTTTGGCGTGCCAACTTTGATGAGTTTATAAGATGTCTTAGACATAAGGCTTGCATTGAACATGTTAGATCACAGTTTGATGACGGAGTGGTAAATGTATTGAGTGCCATTTTGGAGGCTACTCGAAGTTCTGAAAAAATCGTGAAAACAGAGATAACAGTTCCTTTATCATTGGATAACATATATGAGGAGGTAATGAAGAATGAAGTAGGACGGAGTATGACCTTAGATCGGGTTGAAGCTTCCCTCTCCGCATTGGGTTGTCCGGGGATGGATGATTATAAAATTAATTTGCGGAAGATCATTGAACAAGCTCAAATTGATGAGGTTGAATCAATTGTTTTAAAAAGATATGGAAGGGATGCTTACAGAATGTTCAGATTCCTGTCAAAAACTGGTGGCTTGGTTGAGACAGAAAAGATTTCCGATAGTTCATTTGTTGATAAGAATGAGGCGCCTAAAATTTTATATAGGTTGTGGAAGGACGAGTACCTATACATGGAGAAAGTAGCTCTAACAGTACCTAGGCATTCCCTATGCTTGTTGTGGAGAGTAGACAGATATAATTTGTGGGAACATGTTCTGGATGAGATGTATCATGCTTCATTGAACTTGCAGCTACGACAGGCTTATGAGATGGAAGAAGACAAAGAGCTGCTGAGTCTTCCACCAGATAATCGCAACGAACCGCTCAAGAAAAGATTTAATCGTTTGAGGAATGTCAGAGGACTCCTGCAGTCGTCACTGCTGAAGCTCGACGATGCTCTAATGCTTTTCCATGACTTCTAA

Protein sequence

MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLLEGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVERCPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLRQAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF

Homology

[Close]

BLAST of CcUC05G090900 vs. NCBI nr
Match: XP_038878061.1 (DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_038878062.1 DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida])

HSP 1 Score: 974.9 bits (2519), Expect = 2.7e-280
Identity = 498/534 (93.26%), Postives = 511/534 (95.69%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           MVMTQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTELTSSQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELTSSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSN+LHRMRFSKFLAIASEKL KDKDCE LL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNVLHRMRFSKFLAIASEKLRKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQMVERA+SSK A            GNRPIPD+VHDSL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQMVERAQSSKHA------------GNRPIPDIVHDSLFKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEP+LSPKVEEQPPP+KRGAKAAKISEVPETLEQR+VESARPMEVLRFSMGDTNTEA
Sbjct: 181 CPAPEPSLSPKVEEQPPPKKRGAKAAKISEVPETLEQRVVESARPMEVLRFSMGDTNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            KSEHYSQISGQKRKHDDLE VQDSGDA  +ILWRANFDEFIRCLRHKACIEHVRSQFDD
Sbjct: 241 EKSEHYSQISGQKRKHDDLEMVQDSGDADSVILWRANFDEFIRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLS+LGC
Sbjct: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSSLGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
           PGMDDY+INLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD
Sbjct: 361 PGMDDYQINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEMEE+KELLSLPPDNRNEPL KRF+RL+ VRGLLQSSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEENKELLSLPPDNRNEPLMKRFDRLKKVRGLLQSSLLKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. NCBI nr
Match: KAG6574180.1 (DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7013236.1 DNA-directed RNA polymerase III subunit RPC3 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 938.7 bits (2425), Expect = 2.2e-269
Identity = 477/534 (89.33%), Postives = 504/534 (94.38%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCE LL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ++ERA+SSK A            GNRPIPDVV++SL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------GNRPIPDVVNESLLKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSP+VEEQPPPRKRGAKAAK+SEVP TLEQRLVESARPMEV+RFS+G+TNTEA
Sbjct: 181 CPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            +SEHYS ISGQKRK  DL+T+Q+SGDA GIILWRANFDEFIRCLRHKACIEHVRSQFDD
Sbjct: 241 EESEHYSSISGQKRKRGDLDTIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           G VNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC
Sbjct: 301 GAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
            GM+DYKINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVD
Sbjct: 361 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEME+DKELL+LPPD R  PL+KR+NRLRNVR LL+SSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. NCBI nr
Match: XP_022945853.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata])

HSP 1 Score: 936.0 bits (2418), Expect = 1.4e-268
Identity = 475/534 (88.95%), Postives = 503/534 (94.19%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCE LL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ++ERA+SSK A            GNRPIPDVV++SL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------GNRPIPDVVNESLLKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSP+VEEQPPPRKRGAKAAK+SEVP TLEQRLVESARPMEV+RFS+G+TNTEA
Sbjct: 181 CPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            +SEHYS ISGQKRK  DL+ +Q+SGDA GIILWRANFDEF+RCLRHKACIEHVRSQFDD
Sbjct: 241 EESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           G VNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC
Sbjct: 301 GAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
            GM+DYKINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVD
Sbjct: 361 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEME+DKELL+LPPD R  PL+KR+NRLRNVR LL+SSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. NCBI nr
Match: XP_023541704.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 933.7 bits (2412), Expect = 7.0e-268
Identity = 474/534 (88.76%), Postives = 502/534 (94.01%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCE LL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ++ERA+SSK A            GNRP PDVV++SL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------GNRPSPDVVNESLLKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSP+VEEQPPPRKRGAKAAK+SEVP TLEQRLVESARPMEV+RFS+G+TNTEA
Sbjct: 181 CPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            +SEHYS ISGQKRK  DL+ +Q+SGDA GIILWRANFDEFIRCLRHKACIEHVRSQFDD
Sbjct: 241 EESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           G VNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC
Sbjct: 301 GAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
            GM+DYKINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVD
Sbjct: 361 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVA+T+PRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVAITIPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEME+DKELL+LPPD R  PL+KR+NRLRNVR LL+SSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. NCBI nr
Match: XP_022968436.1 (DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima])

HSP 1 Score: 932.9 bits (2410), Expect = 1.2e-267
Identity = 475/534 (88.95%), Postives = 503/534 (94.19%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTEL+SSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCE LL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ++ERA+SSK A            GNRPIPDVV++SL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------GNRPIPDVVNESLLKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSP+VEEQPPPRKRGAKAAK+SEVP TLEQRLVESARPMEV+RFS+G+TNTEA
Sbjct: 181 CPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            +SEHYS ISGQKRK  DL+ +Q+SGDA GIILWRANFDEFIRCLRHKACIEHVRSQFDD
Sbjct: 241 EESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           G VNVLSAILEATRSSEKIVKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEASLSALGC
Sbjct: 301 GAVNVLSAILEATRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEASLSALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
            GM+DYKINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVD
Sbjct: 361 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVA+TVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEME+DKELL+LPPD R  PL+KR+NRLRNVR LL+SSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. ExPASy Swiss-Prot
Match: Q9BUI4 (DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C PE=1 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.8e-24
Identity = 129/504 (25.60%), Postives = 222/504 (44.05%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +L+QH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLVQH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLLEG 122
           N V          +    +   +Y A  S +L  +R+ +++   ++ L  D   E ++E 
Sbjct: 61  NLV---------SYQVHKRGVVEYEAQCSRVLRMLRYPRYI-YTTKTLYSDTG-ELIVEE 120

Query: 123 LLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVERCP 182
           LL NG+L+M  +V+     K A +    +     G       V ++  +L   HFV+RCP
Sbjct: 121 LLLNGKLTMSAVVK-----KVADRLTETMED---GKTMDYAEVSNTFVRLADTHFVQRCP 180

Query: 183 APEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGK 242
           +  PT        PPP    A    I+E    L  +L    +     R S  +      K
Sbjct: 181 S-VPTTENSDPGPPPP----APTLVINEKDMYLVPKLSLIGKGKR--RRSSDEDAAGEPK 240

Query: 243 SEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFD--- 302
           ++        K   D+ E + D G     I W+AN D F +  R +A +  V ++ D   
Sbjct: 241 AKR------PKYTTDNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTS 300

Query: 303 DGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRV 362
             +V  +  + E T SS        T PLS + I+        + K  + + +TL  D  
Sbjct: 301 SEIVRTMLRMSEITTSS----SAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDP 360

Query: 363 EASLSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETE 422
              +   G  G   Y INL K +       +ES+V +R+G    R+FR + +    +E +
Sbjct: 361 LEFVGKSGDSGGGMYVINLHKALASLATATLESVVQERFGSRCARIFRLVLQKKH-IEQK 420

Query: 423 KISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLD 482
           ++ D + +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L 
Sbjct: 421 QVEDFAMIPAKEAKDMLYKMLSENFMSLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLH 461

Query: 483 EMYHASLNLQLRQAYEMEEDKELL 493
             Y +  NL  R+ +E +E+K LL
Sbjct: 481 RCYKSIANLIERRQFETKENKRLL 461

[Close]

BLAST of CcUC05G090900 vs. ExPASy Swiss-Prot
Match: Q2TBL4 (DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.0e-24
Identity = 128/503 (25.45%), Postives = 223/503 (44.33%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T  +  QV  +L +LIQH
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTGTSLDQVKKALCVLIQH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLLEG 122
           N V          +    +   +Y A  + +L  +R+ +++  A + L  D   E ++E 
Sbjct: 61  NLV---------TYQVHKRGVVEYEAQCNRVLRMLRYPRYIYTA-KTLYSDTG-ELIVEE 120

Query: 123 LLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVERCP 182
           LL NG+++M  +V+     K A +    +     G       V ++  +L+  HFV+RCP
Sbjct: 121 LLLNGKMTMSAVVK-----KVADRLTETMED---GKTMDYAEVSNTFVRLVDTHFVQRCP 180

Query: 183 APEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGK 242
               T +      PP     A    +SE    L  +L    +     R S  +  T   K
Sbjct: 181 LVPATENSDTGPPPP-----APTLVVSEKDMYLVPKLSLIGKGKR--RRSSDEDATGEPK 240

Query: 243 SEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDDGV 302
           ++        K+  D+ E + D G     I W+AN D F +  R +A +  V ++ D   
Sbjct: 241 AKR------PKQTTDNKEPIPDDG-----IYWQANLDRFHQHFRDQAIVSAVANRMDQTS 300

Query: 303 VNVLSAILEATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVE 362
             ++  +L   R SE    +    T PLS + I+        + K  + + +TL  D   
Sbjct: 301 SEIVRTML---RMSEVTTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPL 360

Query: 363 ASLSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK 422
             +   G  G   Y INL K +       +ES+V +R+G    R+FR + +   L E ++
Sbjct: 361 EFVGKSGDSGGGMYVINLHKALGSLATATLESVVQERFGSRCARIFRLVLQKKHL-EQKQ 420

Query: 423 ISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDE 482
           + D + +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L  
Sbjct: 421 VEDFAMIPAKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNILSAARMLLHR 461

Query: 483 MYHASLNLQLRQAYEMEEDKELL 493
            Y +  NL  R+ +E +E+K LL
Sbjct: 481 CYKSVANLIERRQFETKENKRLL 461

[Close]

BLAST of CcUC05G090900 vs. ExPASy Swiss-Prot
Match: Q9D483 (DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c PE=1 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.4e-22
Identity = 121/501 (24.15%), Postives = 213/501 (42.51%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLVRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLLEG 122
           N V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E 
Sbjct: 61  NLVL---------YHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEE 120

Query: 123 LLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVERCP 182
           LL NG+++M  +V+     K A +    +     G       V ++  +L   HFV+RCP
Sbjct: 121 LLLNGKMTMSAVVK-----KVADRLTETMED---GKTMDYAEVSNAFVRLADTHFVQRCP 180

Query: 183 APEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGK 242
               T S   +  PPP    A    I+E    L  +L    +           T     K
Sbjct: 181 LVPDTDSS--DRGPPP---PAPTLVINEKDMYLVPKLSLIGKGKRRRSSDEDATGEPKAK 240

Query: 243 SEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDDGV 302
              Y+         D+ E   D G     I W+ N D F +  R +A +  V ++ D   
Sbjct: 241 KPRYT---------DNKEPSPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTS 300

Query: 303 VNVLSAILEATRSSEKIVKTEITVPLSLDNIYE------EVMKNEVGRSMTL--DRVEAS 362
             ++  +L  +  +        T PLS + I+        + K  + + +TL  D     
Sbjct: 301 SEIVRTMLRMSEITTP-SSAPYTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPLEF 360

Query: 363 LSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKIS 422
           +   G  G   + INL K +       +ES++ +R+G    R+FR + +   L E +++ 
Sbjct: 361 IGKSGDSGGGMFVINLHKALASLATATLESVIQERFGSRCARIFRLVLQKKHL-EQKQVE 420

Query: 423 DSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDEMY 482
           D + +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L   Y
Sbjct: 421 DFAMIPAKEAKDMLYKMLSENFILLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHRCY 460

Query: 483 HASLNLQLRQAYEMEEDKELL 493
            +  NL  R+ +E +E+K LL
Sbjct: 481 KSIANLIERRQFETKENKRLL 460

[Close]

BLAST of CcUC05G090900 vs. ExPASy Swiss-Prot
Match: Q5XIL3 (DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Polr3c PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.4e-22
Identity = 122/503 (24.25%), Postives = 214/503 (42.54%), Query Frame = 0


Query: 3   MTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILIQH 62
           MTQ  IK    ++  HFG +V K+   L+R G   LR++   T+ +  QV  +L +LI H
Sbjct: 1   MTQAEIKLCSLLLQEHFGEIVEKIGVHLIRTGSQPLRVIAHDTKASLDQVKKALCVLIHH 60

Query: 63  NCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLLEG 122
           N V          +    +   +Y A  S +L  +R+ ++  I + K       E ++E 
Sbjct: 61  NLV---------IYHVHKRGVVEYEAQCSRVLRMLRYPRY--IYTTKTLYGDTGELIVEE 120

Query: 123 LLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVERCP 182
           LL NG+++M  +V+     K A +    +     G       V ++  +L   HFV+RCP
Sbjct: 121 LLLNGKMTMSAVVK-----KVADRLTETMED---GKTMDYAEVSNAFVRLADTHFVQRCP 180

Query: 183 APEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEAGK 242
                L P  +   P     A    I+E    L  +L              G     + +
Sbjct: 181 -----LVPDTDSSDPGPPPPAPNLVINEKDMYLVPKL---------SLIGKGKRRRSSDE 240

Query: 243 SEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDDGV 302
                  + + R  D+ E   D G     I W+ N D F +  R +A +  V ++ D   
Sbjct: 241 DAAGEPKAKKPRCTDNEEPTPDDG-----IYWQVNLDRFHQHFRDQAIVSAVANRMDQTS 300

Query: 303 VNVLSAILEATRSSEKIVKT--EITVPLSLDNIYE------EVMKNEVGRSMTL--DRVE 362
             ++  +L   R SE    +    T PLS + I+        + K  + + +TL  D   
Sbjct: 301 SEIVRTML---RMSEITTPSGAPFTQPLSSNEIFRSLPVGYNISKQVLDQYLTLLADDPL 360

Query: 363 ASLSALGCPGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEK 422
             +   G  G   Y INL K +       +ES++ +R+G    R+FR + +   L E ++
Sbjct: 361 EFIGKAGDSGGGMYVINLHKALASLSTATLESVIQERFGSRCARIFRLVLQKKHL-EQKQ 420

Query: 423 ISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVPRHS---LCLLWRVDRYNLWEHVLDE 482
           + D + +   EA  +LY++  + ++ ++++  T P H+      L+ V+  +    +L  
Sbjct: 421 VEDFAMIPAKEAKDMLYKMLSENFISLQEIPKT-PDHAPSRTFYLYTVNVLSAARMLLHR 460

Query: 483 MYHASLNLQLRQAYEMEEDKELL 493
            Y +  NL  R+ +E +E+K LL
Sbjct: 481 CYKSIANLIERRQFETKENKRLL 460

[Close]

BLAST of CcUC05G090900 vs. ExPASy Swiss-Prot
Match: Q55FJ5 (DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=44689 GN=polr3c PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 4.4e-15
Identity = 141/680 (20.74%), Postives = 262/680 (38.53%), Query Frame = 0


Query: 6   YGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE----LTSSQVNNSLLILIQ 65
           Y  K A+ I+   FG+ V KV E L+++G  + +++ +       LT  ++   LL+LIQ
Sbjct: 2   YEQKVAIDIVKESFGDDVTKVFEFLVQRGKSSYKIINQSLSGKGGLTIKRIKQCLLVLIQ 61

Query: 66  HNCV---QAFTAVTEGEF-----GDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKD 125
           HN V   +    +T+ E      G+   +D+ Y A+  N +HR+RF KF+     K  K 
Sbjct: 62  HNLVTYEEFLLPLTKDEIEKLVPGEPLPSDSVYEAIIVNAIHRLRFPKFINYI--KHSKG 121

Query: 126 KDCEGLLEGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLL 185
            +   +LE L+ +GRL M+ ++++A   +         V  F     I     D+ +KL+
Sbjct: 122 DEAAYILEELIDHGRLPMDLLIKQASQIQR--------VDTFEDQDDITKRFEDTFTKLI 181

Query: 186 TAHFVERCPAPEPTLSPKVEE--QPPPRKRGAKAAKISEV-------------------- 245
              F+ R P P P    +         +K G   A  + V                    
Sbjct: 182 MDQFIMRAPRPRPVSDQETSNALSKEAKKVGGGGANGNNVGAHQKKDSDPFALPSVGFSS 241

Query: 246 --PETLEQRLVESARPMEVL----------------------------------RFSMG- 305
             P +        A  +E+L                                    S+G 
Sbjct: 242 NGPLSSVDNSANDAESLEILTGKSSTTTIPSQPKKGTAKKTSAKPKSTAINTTATASLGR 301

Query: 306 ---------------------DTNTEAGKSEHYS-----------------QISGQKRKH 365
                                + N E   ++H S                 Q + +K K 
Sbjct: 302 KRKSRDIYDEDDDEEPDLLVIEENVEINVNDHNSANKNSTTTTTTTTTKTGQHTLKKSKL 361

Query: 366 DDLETV--------QDSGDAGGII-----LWRANFDEFIRCLRHKACIEHVRSQFDDGVV 425
           D   +         Q+  D   II     LW  N+++FI   + KAC + V  + +    
Sbjct: 362 DQSSSTTTTSSRQQQNGMDQQRIIDESRVLWTINYEQFIIEFKLKACYDFVTEKNNQQSG 421

Query: 426 NVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKN-EVGRSMTLDRVEASLSALGC-- 485
            + +A+++  + S +  +  +T  +  +NI EE  ++ +  + M   ++E  LS +    
Sbjct: 422 LLFNAMVKLCKRSIRSNQDSLTSCVYGENILEEYNRDLDSSKKMDKLQIEKYLSIMQASR 481

Query: 486 PGM----------------DDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKT 535
           P M                  Y++N+  II   +   VESI+ +++G +  R+F+ L   
Sbjct: 482 PSMVTKMVSKSKQSSSSELGAYQVNVGNIIGIIKQKMVESIIKQKFGDNGLRVFKLL-LI 541

[Close]

BLAST of CcUC05G090900 vs. ExPASy TrEMBL
Match: A0A6J1G256 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LOC111449973 PE=3 SV=1)

HSP 1 Score: 936.0 bits (2418), Expect = 6.8e-269
Identity = 475/534 (88.95%), Postives = 503/534 (94.19%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLL+RFTEL+SSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLVRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCE LL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ++ERA+SSK A            GNRPIPDVV++SL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------GNRPIPDVVNESLLKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSP+VEEQPPPRKRGAKAAK+SEVP TLEQRLVESARPMEV+RFS+G+TNTEA
Sbjct: 181 CPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            +SEHYS ISGQKRK  DL+ +Q+SGDA GIILWRANFDEF+RCLRHKACIEHVRSQFDD
Sbjct: 241 EESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFVRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           G VNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC
Sbjct: 301 GAVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
            GM+DYKINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVD
Sbjct: 361 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEME+DKELL+LPPD R  PL+KR+NRLRNVR LL+SSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. ExPASy TrEMBL
Match: A0A6J1HUV1 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC111467684 PE=3 SV=1)

HSP 1 Score: 932.9 bits (2410), Expect = 5.8e-268
Identity = 475/534 (88.95%), Postives = 503/534 (94.19%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           M  TQYGIKYAVHIITAHFGNLVAKVCETLLR+GPLTLRLLIRFTEL+SSQ+NNSLLILI
Sbjct: 1   MASTQYGIKYAVHIITAHFGNLVAKVCETLLRRGPLTLRLLIRFTELSSSQINNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCE LL
Sbjct: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ++ERA+SSK A            GNRPIPDVV++SL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQIIERAKSSKHA------------GNRPIPDVVNESLLKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSP+VEEQPPPRKRGAKAAK+SEVP TLEQRLVESARPMEV+RFS+G+TNTEA
Sbjct: 181 CPAPEPTLSPQVEEQPPPRKRGAKAAKVSEVPPTLEQRLVESARPMEVIRFSIGETNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            +SEHYS ISGQKRK  DL+ +Q+SGDA GIILWRANFDEFIRCLRHKACIEHVRSQFDD
Sbjct: 241 EESEHYSSISGQKRKRGDLDMIQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           G VNVLSAILEATRSSEKIVKTEITVPLSL+NIYEEVMKNEVGRSMTLDRVEASLSALGC
Sbjct: 301 GAVNVLSAILEATRSSEKIVKTEITVPLSLENIYEEVMKNEVGRSMTLDRVEASLSALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
            GM+DYKINL+KIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDS+FVD
Sbjct: 361 SGMEDYKINLQKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSAFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVA+TVPR+SLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVAITVPRYSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEME+DKELL+LPPD R  PL+KR+NRLRNVR LL+SSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEQDKELLNLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. ExPASy TrEMBL
Match: A0A6J1CHB3 (DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=LOC111011656 PE=3 SV=1)

HSP 1 Score: 921.4 bits (2380), Expect = 1.7e-264
Identity = 478/534 (89.51%), Postives = 496/534 (92.88%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           M  TQ GIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTEL SSQVNNSLLILI
Sbjct: 1   MGTTQNGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELNSSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFT+VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLA+ASEKLEKDK+CE LL
Sbjct: 61  QHNCVQAFTSVTEGEFGDAPKTDTQYLALFSNILHRMRFSKFLAVASEKLEKDKNCEELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ+VERA+SSK A            GNRPIPDVVH+SL KLLTAHFVER
Sbjct: 121 EGLLQNGRLSMEQLVERAKSSKHA------------GNRPIPDVVHESLFKLLTAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEP LS +VEEQPPP+KRGAKAAKISEVPETLEQRLV  ARPMEVLRFSM +TNTEA
Sbjct: 181 CPAPEPILSAQVEEQPPPKKRGAKAAKISEVPETLEQRLVGVARPMEVLRFSMSETNTEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            KSE    ISGQKRKHD+LE VQ+SGDA GIILWRANFDEFIRCLRHKACIEHVRSQFDD
Sbjct: 241 EKSE--LPISGQKRKHDELEAVQESGDADGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           GVVNVLSAILEATRSSEK VKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC
Sbjct: 301 GVVNVLSAILEATRSSEKTVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
           PGMDDYKINLRKIIEQAQI+EVESIVLKRYGRDAYRMFRFLS+TGGLVETEKISDSSFVD
Sbjct: 361 PGMDDYKINLRKIIEQAQIEEVESIVLKRYGRDAYRMFRFLSRTGGLVETEKISDSSFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVALT PRHSLCLLWRVD+YNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVALTGPRHSLCLLWRVDKYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
           QAYEME+DKELLSLPPD R  PL+KR+NRLRNVR LL+SSLLKLDDALMLFHDF
Sbjct: 481 QAYEMEQDKELLSLPPDKRGGPLEKRYNRLRNVRILLESSLLKLDDALMLFHDF 520

[Close]

BLAST of CcUC05G090900 vs. ExPASy TrEMBL
Match: A0A1S3AYY3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC103484083 PE=3 SV=1)

HSP 1 Score: 920.6 bits (2378), Expect = 3.0e-264
Identity = 470/534 (88.01%), Postives = 493/534 (92.32%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLRKGPLTLRLLIRFTELT SQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFT VTEGEFGDAPK DTQYLALFSNILHRMRFSKFLAIAS+KL +DK+C+ LL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTQYLALFSNILHRMRFSKFLAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQMVERAESS  A            GNRPIPDVVHDSL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQMVERAESSGRA------------GNRPIPDVVHDSLFKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSPKVEEQPPPRKRGAKAAKI EVPETLEQRL+E+ARP+EVLRFSMGDTN EA
Sbjct: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKIFEVPETLEQRLIEAARPVEVLRFSMGDTNPEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            KSEHYSQISGQKRKHD+LE  QDSG A G ILWRAN+DEFIRCLRHKAC+EHVRSQFDD
Sbjct: 241 EKSEHYSQISGQKRKHDELEIAQDSGHADGAILWRANYDEFIRCLRHKACVEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           GVVNVLSA LEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC
Sbjct: 301 GVVNVLSAFLEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
           PGMDDYKINLR+I+EQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD
Sbjct: 361 PGMDDYKINLRRIVEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVA+TVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVAITVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
            A+E+EE+KELLSLP DN N+PL K+ +    VR LL+SSL+KLDDALMLFHDF
Sbjct: 481 LAHEIEENKELLSLPKDNNNKPLVKKMHHFEKVRNLLRSSLVKLDDALMLFHDF 522

[Close]

BLAST of CcUC05G090900 vs. ExPASy TrEMBL
Match: A0A0A0LBF3 (DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3G182170 PE=3 SV=1)

HSP 1 Score: 913.7 bits (2360), Expect = 3.6e-262
Identity = 471/534 (88.20%), Postives = 493/534 (92.32%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTSSQVNNSLLILI 60
           MVMTQYGIKYAVHI+TAHFGNLVAKVCETLLRKGPLTLRLLIRFTELT SQVNNSLLILI
Sbjct: 1   MVMTQYGIKYAVHIMTAHFGNLVAKVCETLLRKGPLTLRLLIRFTELTPSQVNNSLLILI 60

Query: 61  QHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEGLL 120
           QHNCVQAFT VTEGEFGDAPK DT YLALFSNILHRMRFSKF+AIAS+KL +DK+C+ LL
Sbjct: 61  QHNCVQAFTDVTEGEFGDAPKDDTLYLALFSNILHRMRFSKFVAIASQKLGQDKNCQELL 120

Query: 121 EGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFVER 180
           EGLLQNGRLSMEQ+VERAESS  A            GN PI DVVHDSL KLL AHFVER
Sbjct: 121 EGLLQNGRLSMEQLVERAESSGRA------------GNHPISDVVHDSLFKLLNAHFVER 180

Query: 181 CPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSMGDTNTEA 240
           CPAPEPTLSPKVEE PPPRKRGAKAAKISEVPETLEQRL+E+ARP+EVLRFSMGDTN EA
Sbjct: 181 CPAPEPTLSPKVEE-PPPRKRGAKAAKISEVPETLEQRLIEAARPVEVLRFSMGDTNPEA 240

Query: 241 GKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQFDD 300
            KSEH+SQISGQKRKHDDLE  QDSGDA G ILWRAN+DEFIRCLRHKACIEHVRSQFDD
Sbjct: 241 EKSEHHSQISGQKRKHDDLEIAQDSGDADGPILWRANYDEFIRCLRHKACIEHVRSQFDD 300

Query: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSALGC 360
           GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASL+ALGC
Sbjct: 301 GVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLAALGC 360

Query: 361 PGMDDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420
           PGMDDYKINLR+IIEQAQ DEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD
Sbjct: 361 PGMDDYKINLRRIIEQAQTDEVESIVLKRYGRDAYRMFRFLSKTGGLVETEKISDSSFVD 420

Query: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480
           KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR
Sbjct: 421 KNEAPKILYRLWKDEYLYMEKVALTVPRHSLCLLWRVDRYNLWEHVLDEMYHASLNLQLR 480

Query: 481 QAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDDALMLFHDF 535
            A+E+EE+KELLSLP DN N+PL K+ +   NVR LL+SSL+KLDDALMLFHDF
Sbjct: 481 LAHEIEENKELLSLPKDNNNKPLVKKMHHFENVRNLLRSSLVKLDDALMLFHDF 521

[Close]

BLAST of CcUC05G090900 vs. TAIR 10
Match: AT3G49000.1 (RNA polymerase III subunit RPC82 family protein )

HSP 1 Score: 454.9 bits (1169), Expect = 8.9e-128
Identity = 252/548 (45.99%), Postives = 364/548 (66.42%), Query Frame = 0


Query: 1   MVMTQYGIKYAVHIITAHFGNLVAKVCETLLRKGPLTLRLLIRFTE--LTSSQVNNSLLI 60
           M M+++GI YA+HIIT  FG++V+KVCE LLRKGPL+ R + R  E  +  ++V + L +
Sbjct: 1   MSMSEFGIVYAIHIITVQFGSVVSKVCECLLRKGPLSSRDISRLAESDINHNKVKDILYL 60

Query: 61  LIQHNCVQAFTAVTEGEFGDAPKADTQYLALFSNILHRMRFSKFLAIASEKLEKDKDCEG 120
           LIQHNCVQAF+   E   G   KA  QY+ LF+NILHR+R++KF  I +E+L  D  C  
Sbjct: 61  LIQHNCVQAFS--IEPPDGSESKAIVQYIVLFNNILHRVRYNKFSRIVNEEL--DSKCGA 120

Query: 121 LLEGLLQNGRLSMEQMVERAESSKSAGKFVTCIVSAFIGNRPIPDVVHDSLSKLLTAHFV 180
           +L+GLL NGRL++ Q +ER   S               GN    + + DSL KL+ A FV
Sbjct: 121 VLDGLLSNGRLTLGQFIERDRDS---------------GNTIGSEAIRDSLQKLVAARFV 180

Query: 181 ERCPAPEPTLSPKVEEQPPPRKRGAKAAKISEVPETLEQRLVESARPMEVLRFSM-GDTN 240
           ER P+PEP L  K  E+ P ++RGAKAAKI + PETLE+++VE+A P++ +RF +  + +
Sbjct: 181 ERIPSPEPVLGNK--EKEPAKRRGAKAAKILKEPETLEEQVVEAATPVDAIRFPLIFEED 240

Query: 241 TEAGKSEHYSQISGQKRKHDDLETVQDSGDAGGIILWRANFDEFIRCLRHKACIEHVRSQ 300
           + +  ++  S I+  KRK  D+    D+ D+   ++WR NF+EFI  LRHKAC+E V+ +
Sbjct: 241 SNSSLADDNSNITEGKRKQRDV----DTSDSSSGVIWRPNFEEFIHRLRHKACVEIVKER 300

Query: 301 FDDGVVNVLSAILEATRSSEKIVKTEITVPLSLDNIYEEVMKNEVGRSMTLDRVEASLSA 360
            D+G   VL A+LE  RS EK VKT+ + P+S+ +IYEEV+K E GR+M  +RVEA L  
Sbjct: 301 RDEGCAIVLRAMLEVGRSQEKKVKTDNSAPMSVGSIYEEVIKTEAGRTMLQERVEACLDQ 360

Query: 361 LGCPGM----------DDYKINLRKIIEQAQIDEVESIVLKRYGRDAYRMFRFLSKTGGL 420
           L               D Y ++ + II  AQ DE+E++V++RYG++A+RMFR+LS+ G  
Sbjct: 361 LSATSSYLPAFVNEVNDSYIVDYKSIISVAQKDEIEAVVMRRYGKEAFRMFRYLSQEGRF 420

Query: 421 VETEKISDSSFVDKNEAPKILYRLWKDEYLYMEKVALTVP-RHSLCLLWRVDRYNLWEHV 480
           VET+KI+D++  +K + P+ L ++WKD YL+M+K+A+T P  ++  LLW+V++  +   +
Sbjct: 421 VETDKIADAALTEKKDTPQFLLKMWKDGYLHMQKLAVTAPGMYTPFLLWKVNKLIVTTQM 480

Query: 481 LDEMYHASLNLQLRQAYEMEEDKELLSLPPDNRNEPLKKRFNRLRNVRGLLQSSLLKLDD 535
           LDEMYHASLNL LR A+E+E +KELL LP D    PLK+R  +++  R LL S++ KLDD
Sbjct: 481 LDEMYHASLNLSLRLAHELEAEKELLLLPLDKLEGPLKERLKKVKAKRLLLSSTMFKLDD 523

The following BLAST results are available for this feature:

BLAST of CcUC05G090900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878061.1	2.7e-280	93.26	DNA-directed RNA polymerase III subunit RPC3 isoform X1 [Benincasa hispida] >XP_...	[more]
KAG6574180.1	2.2e-269	89.33	DNA-directed RNA polymerase III subunit RPC3, partial [Cucurbita argyrosperma su...	[more]
XP_022945853.1	1.4e-268	88.95	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita moschata]	[more]
XP_023541704.1	7.0e-268	88.76	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita pepo subsp. pepo]	[more]
XP_022968436.1	1.2e-267	88.95	DNA-directed RNA polymerase III subunit RPC3 [Cucurbita maxima]	[more]

BLAST of CcUC05G090900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BUI4	1.8e-24	25.60	DNA-directed RNA polymerase III subunit RPC3 OS=Homo sapiens OX=9606 GN=POLR3C P...	[more]
Q2TBL4	4.0e-24	25.45	DNA-directed RNA polymerase III subunit RPC3 OS=Bos taurus OX=9913 GN=POLR3C PE=...	[more]
Q9D483	6.4e-22	24.15	DNA-directed RNA polymerase III subunit RPC3 OS=Mus musculus OX=10090 GN=Polr3c ...	[more]
Q5XIL3	6.4e-22	24.25	DNA-directed RNA polymerase III subunit RPC3 OS=Rattus norvegicus OX=10116 GN=Po...	[more]
Q55FJ5	4.4e-15	20.74	DNA-directed RNA polymerase III subunit rpc3 OS=Dictyostelium discoideum OX=4468...	[more]

BLAST of CcUC05G090900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G256	6.8e-269	88.95	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita moschata OX=3662 GN=LO...	[more]
A0A6J1HUV1	5.8e-268	88.95	DNA-directed RNA polymerase III subunit RPC3 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]
A0A6J1CHB3	1.7e-264	89.51	DNA-directed RNA polymerase III subunit RPC3 OS=Momordica charantia OX=3673 GN=L...	[more]
A0A1S3AYY3	3.0e-264	88.01	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0LBF3	3.6e-262	88.20	DNA-directed RNA polymerase III subunit RPC3 OS=Cucumis sativus OX=3659 GN=Csa_3...	[more]

BLAST of CcUC05G090900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49000.1	8.9e-128	45.99	RNA polymerase III subunit RPC82 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 277..372 e-value: 1.8E-7 score: 33.8
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 91..188 e-value: 1.8E-17 score: 65.1
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 3..76 e-value: 2.8E-23 score: 83.9
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 373..458 e-value: 6.7E-20 score: 72.8
IPR008806	RNA polymerase III Rpc82, C -terminal	PFAM	PF05645	RNA_pol_Rpc82	coord: 168..349 e-value: 4.4E-16 score: 59.4
IPR013197	RNA polymerase III subunit RPC82-related, helix-turn-helix	PFAM	PF08221	HTH_9	coord: 10..69 e-value: 3.1E-22 score: 78.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 183..207
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 237..257
IPR039748	DNA-directed RNA polymerase III subunit RPC3	PANTHER	PTHR12949	RNA POLYMERASE III DNA DIRECTED -RELATED	coord: 3..534

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G090900.1	CcUC05G090900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005666	RNA polymerase III complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003697	single-stranded DNA binding
molecular_function	GO:0003677	DNA binding