CcUC05G090740 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G090740
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr05: 8406166 .. 8407955 (-)
RNA-Seq Expression	CcUC05G090740
Synteny	CcUC05G090740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATCGGACGTGCAATTCAGCAAAACGGAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAATCGCAACCATCGCCGCTGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTTCCCTCGGAAGGACACAAAAAACCATGCCACCTCCGGTGAGTCGTTTAATGTTACAATTTTTTCCCACTCATTTTCTAGGTCTTTAATTTAACCTTTTTTTTTTTTTTTTTTCATTTTCTAAAAAGCGCATTATCGGGGTCAATAATAGGATTAAGGTTGGAGTGGTTTTTGGTTAACGTGAAAAAACCCCACTATTTTCGTTTTTTTTTTTTTTTTTTTTTTTGGTATTTATTTATTTATACCAAAAAGGACCAACCAAACAGCGCCTAAAAAATACGATAAAAGTGGGAATAGTGAATATTCCTTAGGAAGATATTTATTTGTGATTTAGATATCACAATAAAAATCACTTTCTTTTCACTCCAAAAAGATCATTAATATTCTTTCTTTTCTGGTTGCTTGCATTTTCTTTTTTTCTTTTTTCTTATTATTGCCTTTTTTTTTATTTCTTTTGGCTGTGATCCAGGGGATGCCAGAATCAACGGTAGATCTATCAGGAGATCAAGGAGGATATCATCTCTACCGCACACTTCGGCTCGAGATCAGGCTAGTGCAGAAACCATATAATATAAACATTACATTTCTTCTCTCTTTCTTTTTTCTCTACCAATTATAGAAATTATATTTATGATCAGTTTTTGCTTTTATAACATTTTTGTCTTTGTCACCCTTTAATCTTCTCTTTTTCCATCAAAATTATGCTCTATTTTTGCGGCTGGTGTGGGTATTTCGTAATGCCACGTGGACATACATTCTTATGAAAAAGTTACCATTTTGTGATTAAGCTAAACTCTAATATTACGAGATTCAATCCAAATGGAGTTATATATATTTTTTATAATAAATTTAAAAACTAGATTCTAATTTAAGTCATGGTTTAAAATGTATTTGATATTATATTTATATATTCTAGAATTAGTTGTAGTTCATTTAGGTCACAATAAACTATTACTAATTTATGAATATATTTTTTTAAAATATAATTTATTTATGAATATTAAATTTTTTTTGTATAATTATTCTTTTGTAATATTATATAATTTATAATACATTTTAATTTAAAAAAATTAAATTATGTTATAACATGACTATATTTCTATATATTTTTATTTAATATAAATTTACATTTTAAAATTTAAAATTCTAAATCTAGATACAATAAAAAATATATATATTATTTTCAGAATTTACATTGTTCTAGTGACAGAATTTGAAAACAGTTTTCATAAATAGTATTATATTTACTAAATTTAAAAACATAAAACAAAATTAAGATGGTTAACTATACATGCCTTAAAAAAATTTCTTAATTTAAATTAAAGTATTAAATTTTACAAAAACACAACAAAAATATCTCCTTCAATTATTAAACGAACCTCATCAATTATCTTTTTTTTTTTCTCTCTCTCTCTCTCTCTTTTTTCGTTTTTTCCTTTGTAACAATCCTCATCAATCATCGATATGTTATAAATTACACATAAATTACTTAGAAAATAACATATTTTTATAATTAATTAATTAATGAAATGACAGGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAAGATGAAGATGAGAGTGACCATCCCATCTCATTTATCAACTAA

mRNA sequence

ATGGAAGAATCGGACGTGCAATTCAGCAAAACGGAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAATCGCAACCATCGCCGCTGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTTCCCTCGGAAGGACACAAAAAACCATGCCACCTCCGGTGAGTCGTTTAATGTTACAATTTTTTCCCACTCATTTTCTAGGACCAACCAAACAGCGCCTAAAAAATACGATAAAAGTGGGAATAGTGAATATTCCTTAGGAAGATATTTATTTGGGATGCCAGAATCAACGGTAGATCTATCAGGAGATCAAGGAGGATATCATCTCTACCGCACACTTCGGCTCGAGATCAGGCTAGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAAGATGAAGATGAGAGTGACCATCCCATCTCATTTATCAACTAA

Coding sequence (CDS)

ATGGAAGAATCGGACGTGCAATTCAGCAAAACGGAGCCGTTTTGGACCAATGAGAAGCACATGCACTTCTTGAATTCCATGGAAGCTTCTTTTGTCCGATCAATGTTCGAAAATCGCAACCATCGCCGCTGTCTACGGCTGGACCGCCACTTGCCGGACACCGCTGACTCAACCCTAGATTTCCCTCGGAAGGACACAAAAAACCATGCCACCTCCGGTGAGTCGTTTAATGTTACAATTTTTTCCCACTCATTTTCTAGGACCAACCAAACAGCGCCTAAAAAATACGATAAAAGTGGGAATAGTGAATATTCCTTAGGAAGATATTTATTTGGGATGCCAGAATCAACGGTAGATCTATCAGGAGATCAAGGAGGATATCATCTCTACCGCACACTTCGGCTCGAGATCAGGCTAGTGGTCCCACAGATGGAAAAGAGAGCAGTTGAAGATGAAGATGAGAGTGACCATCCCATCTCATTTATCAACTAA

Protein sequence

MEESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNHRRCLRLDRHLPDTADSTLDFPRKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLSGDQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN

Homology

[Close]

BLAST of CcUC05G090740 vs. NCBI nr
Match: XP_022984701.1 (uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima])

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-30
Identity = 84/161 (52.17%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNHRRCLRLDRHLPDTADSTLDFP 62
           ES VQFS+T+PFWTNEKHMHFLNSMEASFVRSMF+NRNHRR LRLDRHL DTADSTLD P
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  RKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLSG 122
           +K+ K H+ SG     T      SR ++  P                   +P +++    
Sbjct: 62  QKNRKKHSISG-----TRMDGRSSRRSRRIP------------------SLPHTSIQ--- 121

Query: 123 DQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
           DQ               VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 DQ---------------VVPQMEERAVEDEDERDHPLSPVN 121

[Close]

BLAST of CcUC05G090740 vs. NCBI nr
Match: XP_023552559.1 (uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 142.1 bits (357), Expect = 4.2e-30
Identity = 84/161 (52.17%), Postives = 98/161 (60.87%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNHRRCLRLDRHLPDTADSTLDFP 62
           ES VQFS+T+PFWTNEKHMHFLNSMEASFVRSMF+NRNHRR LRLDRHL DTADSTLD P
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRLLRLDRHLSDTADSTLDSP 61

Query: 63  RKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLSG 122
            K+ K H+ SG     T      SR ++  P                   +P +++    
Sbjct: 62  HKNRKKHSISG-----TRMDGRSSRRSRRIP------------------SLPHTSIQ--- 121

Query: 123 DQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
           DQ               VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 DQ---------------VVPQMEERAVEDEDERDHPMSPVN 121

[Close]

BLAST of CcUC05G090740 vs. NCBI nr
Match: XP_038882735.1 (uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 5.4e-30
Identity = 88/163 (53.99%), Postives = 102/163 (62.58%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRN-HRRCLRLDRHLPDTADSTLDF 62
           ES VQFS+T PFWTNEKHMHFLNSMEASFV+SMFENRN HRR LRLDRHLPDTADSTLD 
Sbjct: 2   ESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLDS 61

Query: 63  PRK-DTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDL 122
           P+K DTKNHATS    N         R+++ +               R +  +P ++   
Sbjct: 62  PQKDDTKNHATSAVRIN--------GRSSRRS---------------RRISSLPHTSTQ- 121

Query: 123 SGDQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
             DQ               VVPQ+EKRAVEDEDE DHP+S +N
Sbjct: 122 --DQ---------------VVPQIEKRAVEDEDERDHPMSPVN 123

[Close]

BLAST of CcUC05G090740 vs. NCBI nr
Match: XP_038882732.1 (uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida])

HSP 1 Score: 141.4 bits (355), Expect = 7.1e-30
Identity = 90/163 (55.21%), Postives = 101/163 (61.96%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRN-HRRCLRLDRHLPDTADSTLDF 62
           ES VQFS+T PFWTNEKHMHFLNSMEASFV+SMFENRN HRR LRLDRHLPDTADSTLD 
Sbjct: 2   ESHVQFSETGPFWTNEKHMHFLNSMEASFVQSMFENRNHHRRRLRLDRHLPDTADSTLDS 61

Query: 63  PRK-DTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDL 122
           P+K DTKNHATS     V I   S  R+                   R +  +P ++   
Sbjct: 62  PQKDDTKNHATSEA---VRINGRSSRRS-------------------RRISSLPHTSTQ- 121

Query: 123 SGDQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
             DQ               VVPQ+EKRAVEDEDE DHP+S +N
Sbjct: 122 --DQ---------------VVPQIEKRAVEDEDERDHPMSPVN 124

[Close]

BLAST of CcUC05G090740 vs. NCBI nr
Match: XP_022141184.1 (uncharacterized protein LOC111011640 [Momordica charantia])

HSP 1 Score: 139.8 bits (351), Expect = 2.1e-29
Identity = 88/162 (54.32%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNH-RRCLRLDRHLPDTADSTLDF 62
           ES VQF++T   WTNEKHMHFLNSMEASFVRSMFENR H RR LRLDRHLPDT+DSTLD 
Sbjct: 28  ESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLDS 87

Query: 63  PRKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLS 122
           P+KD KNHATSG +  +   S S SRT  + P   ++                       
Sbjct: 88  PQKDRKNHATSGAA-TIDGRSSSRSRTRSSLPHTSNQ----------------------- 147

Query: 123 GDQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
            DQ               VVPQMEKRAVEDEDE DHP+S IN
Sbjct: 148 -DQ---------------VVPQMEKRAVEDEDERDHPMSPIN 149

[Close]

BLAST of CcUC05G090740 vs. ExPASy TrEMBL
Match: A0A6J1J606 (uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 84/161 (52.17%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNHRRCLRLDRHLPDTADSTLDFP 62
           ES VQFS+T+PFWTNEKHMHFLNSMEASFVRSMF+NRNHRR LRLDRHL DTADSTLD P
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  RKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLSG 122
           +K+ K H+ SG     T      SR ++  P                   +P +++    
Sbjct: 62  QKNRKKHSISG-----TRMDGRSSRRSRRIP------------------SLPHTSIQ--- 121

Query: 123 DQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
           DQ               VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 DQ---------------VVPQMEERAVEDEDERDHPLSPVN 121

[Close]

BLAST of CcUC05G090740 vs. ExPASy TrEMBL
Match: A0A6J1CHV7 (uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011640 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 88/162 (54.32%), Postives = 98/162 (60.49%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNH-RRCLRLDRHLPDTADSTLDF 62
           ES VQF++T   WTNEKHMHFLNSMEASFVRSMFENR H RR LRLDRHLPDT+DSTLD 
Sbjct: 28  ESHVQFNETGSCWTNEKHMHFLNSMEASFVRSMFENRTHRRRRLRLDRHLPDTSDSTLDS 87

Query: 63  PRKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLS 122
           P+KD KNHATSG +  +   S S SRT  + P   ++                       
Sbjct: 88  PQKDRKNHATSGAA-TIDGRSSSRSRTRSSLPHTSNQ----------------------- 147

Query: 123 GDQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
            DQ               VVPQMEKRAVEDEDE DHP+S IN
Sbjct: 148 -DQ---------------VVPQMEKRAVEDEDERDHPMSPIN 149

[Close]

BLAST of CcUC05G090740 vs. ExPASy TrEMBL
Match: A0A6J1JBA6 (uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482903 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 2.2e-29
Identity = 80/161 (49.69%), Postives = 102/161 (63.35%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNHRRCLRLDRHLPDTADSTLDFP 62
           ES VQFS+T+PFWTNEKHMHFLNSMEASFVRSMF+NRNHRR LRLDRHL DTADSTLD P
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNHRRRLRLDRHLSDTADSTLDSP 61

Query: 63  RKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLSG 122
           +K+ K H       ++++ +    R+++ +               R +  +P +++    
Sbjct: 62  QKNRKKH-------SISVGTRMDGRSSRRS---------------RRIPSLPHTSIQ--- 121

Query: 123 DQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
           DQ               VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 DQ---------------VVPQMEERAVEDEDERDHPLSPVN 122

[Close]

BLAST of CcUC05G090740 vs. ExPASy TrEMBL
Match: A0A6J1EAV1 (uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111430892 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 82/161 (50.93%), Postives = 99/161 (61.49%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNHRRCLRLDRHLPDTADSTLDFP 62
           ES VQFS+T+PFWTNEKHMHFLNSMEASFVRSMF+NRN+RR L+LDRHL DTADSTLD P
Sbjct: 2   ESHVQFSETKPFWTNEKHMHFLNSMEASFVRSMFKNRNYRRRLQLDRHLSDTADSTLDSP 61

Query: 63  RKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLSG 122
           +K+ K H+ SG     T      SR ++  P                   +P +++    
Sbjct: 62  QKNRKKHSISG-----TRMDGRSSRRSRRIP------------------SLPHTSIQ--- 121

Query: 123 DQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
           DQ               VVPQME+RAVEDEDE DHP+S +N
Sbjct: 122 DQ---------------VVPQMEERAVEDEDERDHPMSPVN 121

[Close]

BLAST of CcUC05G090740 vs. ExPASy TrEMBL
Match: A0A0A0L5V0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 82/161 (50.93%), Postives = 95/161 (59.01%), Query Frame = 0


Query: 3   ESDVQFSKTEPFWTNEKHMHFLNSMEASFVRSMFENRNHRRCLRLDRHLPDTADSTLDFP 62
           ES VQF++T P WTNEKHMHFLNS+EASFVRSMF+NR HRR LRLDR LPDTADSTLD P
Sbjct: 2   ESHVQFTQTGPLWTNEKHMHFLNSVEASFVRSMFQNRAHRRGLRLDRLLPDTADSTLDSP 61

Query: 63  RKDTKNHATSGESFNVTIFSHSFSRTNQTAPKKYDKSGNSEYSLGRYLFGMPESTVDLSG 122
              TKNH TSG            +R N  + ++  +  +  Y+          ST D   
Sbjct: 62  HNHTKNHPTSGS-----------ARINGRSTRRSRRISSPPYT----------STQD--- 121

Query: 123 DQGGYHLYRTLRLEIRLVVPQMEKRAVEDEDESDHPISFIN 164
                            VVPQMEKRAVEDEDE DHP+S +N
Sbjct: 122 ----------------QVVPQMEKRAVEDEDERDHPMSPLN 122

The following BLAST results are available for this feature:

BLAST of CcUC05G090740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022984701.1	4.2e-30	52.17	uncharacterized protein LOC111482903 isoform X2 [Cucurbita maxima]	[more]
XP_023552559.1	4.2e-30	52.17	uncharacterized protein LOC111810184 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_038882735.1	5.4e-30	53.99	uncharacterized protein LOC120073889 isoform X2 [Benincasa hispida]	[more]
XP_038882732.1	7.1e-30	55.21	uncharacterized protein LOC120073889 isoform X1 [Benincasa hispida]	[more]
XP_022141184.1	2.1e-29	54.32	uncharacterized protein LOC111011640 [Momordica charantia]	[more]

BLAST of CcUC05G090740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC05G090740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J606	2.0e-30	52.17	uncharacterized protein LOC111482903 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1CHV7	1.0e-29	54.32	uncharacterized protein LOC111011640 OS=Momordica charantia OX=3673 GN=LOC111011...	[more]
A0A6J1JBA6	2.2e-29	49.69	uncharacterized protein LOC111482903 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1EAV1	3.8e-29	50.93	uncharacterized protein LOC111430892 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0L5V0	1.9e-28	50.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G181960 PE=4 SV=1	[more]

BLAST of CcUC05G090740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044678	Cold-regulated protein 27/28	PANTHER	PTHR33676	COLD REGULATED PROTEIN 27	coord: 4..156
None	No IPR available	PANTHER	PTHR33676:SF15	SUBFAMILY NOT NAMED	coord: 4..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G090740.1	CcUC05G090740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042752	regulation of circadian rhythm
biological_process	GO:0009409	response to cold