CcUC05G090270 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G090270
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr05: 7909879 .. 7911824 (-)
RNA-Seq Expression	CcUC05G090270
Synteny	CcUC05G090270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTAAAAGTGATTTTCCCCATAAACAAAAGCAATCTAATGTAAACCCAATTCTAGTAATGTGAGGCAATTATGCTAATAGAATTGTTTTGATAATAATGATACATAAACACTTCTCATTTCATCATGTTTACATTTTGAAGAAGCTCAAAACTAATGCAGAATTCACCCTTCAACTATTTTAAGATGCTAGAGCTAAATTACTTAATTAAAAAAAAAAAAACAAAAAAAGTAGATTAATAATGCCATCGGATCTGAAACCATTAAAAAAGATCTAAGTTGATGGGCCTAAATGGGATACCGACTGATCACATCGGCCCATGGATCGTTGATGGGCTCTCCTATAATGGGCCGAATACACTCCCAAATCAAACTAACACATTTGGGCCCAGTGCCCATCCCAATTTGCCAAACTTTATCTCCTTTTTCAACTCTTTCTTTAGCTTCCAAATAAGCAAGTTCATACCACAGCGATGAAGACGACTGATTCCCAAATCTATGTAGAGTCATCAATGCCGCTTCCATCTCCTTATCGTTCAGCTTCAGCACTTTTGCAATCGCCCTTATCTCCGCACTCCGCGATACCGGCAAGCAGAAATGCTCAATCACACTCTTGAAATTGGGTATGTAAATTTCTTGCGATTTGTCCACAAATCGCTTTCGTAGCCTCGAAACAACGTGCCGTAGTTTCTCCGACAGCGGCAAGATTGAAGAACCAAGAAGGGTTATGTTTATTCTGAGTATTTCAGGGAAAACTTGAAGAGTATCTCTTGTGACAGAGACGCCGAGTTTTCCGTCCATGTCCTCTTCGAGTATGGCTGAAAGGTAACTTCTATCATCGAAGGATGTTTGTGTTCGAAGGGTTTTAAATAGTTTATATTTTGAAGAATCTTTCGCTTCTTTTCTGTTGGTTAGCAAAAAGCTGCGCTGCCCATTCGGAAGTAGCAATTAAGGATTAATCTGGAGTATTCTTTTCCTGCATACCAACCGTTTGATAAAATATCTGTACTAAGCACAACCGCATTTGAGTTTTCGTTAACTTGAAGAGGATTCTCAGCTAAGTGAATGGCAATAGCACTTGCACTGCACCCCATTCCAGAGAGGTTATAGCTTTTAATGTCACTTCTCATGGAATATTTGTTGATAACTATGGATGACAGAGAAGGAGAAGGGCAAAAACCACTGCAATTAACGATAAGAATATCAATGTCGCATGGAGAGAGATGGGTTTTTGTTAAAAGATCATCCATGACAGGAAACAACACCATATGGACTTCATTAATGGATTCCTGTTGATGGGTTTTTGGTGGTATGAAATGCAGGGCTGGAGGGAGACATGTTTGTTCACTCTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGAGGCTGTCTTTGTCAAAAATATCCATTAACGTTGCATTTTCAAGGAAAAGAGAGAAGGGAACCCTGCAGAAGCTTGGTGGTCTGAGGCATGAGAAGTCAACTAAATAGACAGGGCGAGGAGCATTCAGAATGGGAAGCTTAATGATGTATTTGAAGAAGGCATAAGAAGAGAGTAGGAGGAAGATACAGAAAATGGGATTCCATCCCCTTAAGAAAATATAAGTTTCCATGGAAATAAGGAGAATGAGAATGAAGAAGTTTTGAAGTTGGAAGAAAGGCAAGCGAAGGCGTGTTAACAATTGAGTGAAATGGAGGAGAGTGCCGCCATGGCTTTGACTGAGCTTGGGAACAGATCCCATTGGTTATGGAGGAAAGATTTGTGTGGGAATGGAGAAATGGGAATGTGAAGCAGGTATTGCACTTCGGGTTTTAGTGAGAAAGGCAACACCCAAAGTTCAAATATAATGGTAGGCAGAGAACGAAGAGAGATAATTGAATGAGTTTACTCAAGCCAAGGATGGATTACATACACGATTATATACTAGAGTTGTTAAAAGAA

mRNA sequence

ATGTCTAAAAGTGATTTTCCCCATAAACAAAAGCAATCTAATGTAAACCCAATTCTAGTAATAGTCATCAATGCCGCTTCCATCTCCTTATCGTTCAGCTTCAGCACTTTTGCAATCGCCCTTATCTCCGCACTCCGCGATACCGGCAAGCAGAAATGCTCAATCACACTCTTGAAATTGGAGACGCCGAGTTTTCCGTCCATGTCCTCTTCGAGTATGGCTGAAAGGGCTGGAGGGAGACATGTTTGTTCACTCTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGAGGCTGTCTTTGTCAAAAATATCCATTAACGTTGCATTTTCAAGGAAAAGAGAGAAGGGAACCCTGCAGAAGCTTGGTGGTCTGAGGCATGAGAAGTCAACTAAATAGACAGGGCGAGGAGCATTCAGAATGGGAAGCTTAATGATGTATTTGAAGAAGGCATAAGAAGAGAGTAGGAGGAAGATACAGAAAATGGGATTCCATCCCCTTAAGAAAATATAAGTTTCCATGGAAATAAGGAGAATGAGAATGAAGAAGTTTTGAAGTTGGAAGAAAGGCAAGCGAAGGCGTGTTAACAATTGAGTGAAATGGAGGAGAGTGCCGCCATGGCTTTGACTGAGCTTGGGAACAGATCCCATTGGTTATGGAGGAAAGATTTGTGTGGGAATGGAGAAATGGGAATGTGAAGCAGGTATTGCACTTCGGGTTTTAGTGAGAAAGGCAACACCCAAAGTTCAAATATAATGGTAGGCAGAGAACGAAGAGAGATAATTGAATGAGTTTACTCAAGCCAAGGATGGATTACATACACGATTATATACTAGAGTTGTTAAAAGAA

Coding sequence (CDS)

ATGTCTAAAAGTGATTTTCCCCATAAACAAAAGCAATCTAATGTAAACCCAATTCTAGTAATAGTCATCAATGCCGCTTCCATCTCCTTATCGTTCAGCTTCAGCACTTTTGCAATCGCCCTTATCTCCGCACTCCGCGATACCGGCAAGCAGAAATGCTCAATCACACTCTTGAAATTGGAGACGCCGAGTTTTCCGTCCATGTCCTCTTCGAGTATGGCTGAAAGGGCTGGAGGGAGACATGTTTGTTCACTCTGTCCAGAAGATTTGAGAGTTTTGGCCATGAAACTGAGGCTGTCTTTGTCAAAAATATCCATTAACGTTGCATTTTCAAGGAAAAGAGAGAAGGGAACCCTGCAGAAGCTTGGTGGTCTGAGGCATGAGAAGTCAACTAAATAG

Protein sequence

MSKSDFPHKQKQSNVNPILVIVINAASISLSFSFSTFAIALISALRDTGKQKCSITLLKLETPSFPSMSSSSMAERAGGRHVCSLCPEDLRVLAMKLRLSLSKISINVAFSRKREKGTLQKLGGLRHEKSTK

Homology

[Close]

BLAST of CcUC05G090270 vs. NCBI nr
Match: KAF7820843.1 (hypothetical protein G2W53_026298 [Senna tora])

HSP 1 Score: 54.7 bits (130), Expect = 7.1e-04
Identity = 31/56 (55.36%), Postives = 37/56 (66.07%), Query Frame = 0


Query: 67  SMSSSSMAERAGGRHVCSLCPEDLRVLAMKLRLSLSKISINVAFSRKREKGTLQKL 123
           S+S   +  +AGGRHV SLCPE++R+LAMK  LSL K     AFSR  E G LQ L
Sbjct: 86  SISRGEILCKAGGRHVSSLCPEEVRILAMKFMLSLLKEPNMEAFSRNVEMGALQYL 141

[Close]

BLAST of CcUC05G090270 vs. ExPASy TrEMBL
Match: A0A0A0L5P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178515 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.2e-17
Identity = 52/57 (91.23%), Postives = 53/57 (92.98%), Query Frame = 0


Query: 76  RAGGRHVCSLCPEDLRVLAMKLRLSLSKISINVAFSRKREKGTLQKLGGLRHEKSTK 133
           RAGGR VCSLCPEDLRVLAMKL LSLSKISI VAFSRK EKGTL+KLGGLRHEKSTK
Sbjct: 25  RAGGRQVCSLCPEDLRVLAMKLILSLSKISIKVAFSRKVEKGTLKKLGGLRHEKSTK 81

The following BLAST results are available for this feature:

BLAST of CcUC05G090270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF7820843.1	7.1e-04	55.36	hypothetical protein G2W53_026298 [Senna tora]	[more]

BLAST of CcUC05G090270 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC05G090270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P9	1.2e-17	91.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G178515 PE=4 SV=1	[more]

BLAST of CcUC05G090270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G090270.1	CcUC05G090270.1	mRNA