CcUC05G087230 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G087230
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	DEAD-box ATP-dependent RNA helicase 58
Location	CicolChr05: 5077457 .. 5084558 (-)
RNA-Seq Expression	CcUC05G087230
Synteny	CcUC05G087230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGCCTTCCTCCACTGCCGAATTGTCCATTTCATGGTTCGACTTCATCTTCAACTGCATTCACATGCACTTACTCGTATAAAATTTCAGATATAAAATAATAAAATATCTTCGGATAAAAATTAAAATGGAGAAATATATATTCAATAGTGAAAAATACTTACACCAAAAACGCACTCTACCAAATTATTACCAAATTTTTTTAAAAATTAAACTTTTTTTTAAAAGAATAATTTTCCTTCATTTTGATGGGAAGGAATGCATGAAAATGGATAAAAAAAAATTGAAAAAAATATATATATAACTTGGTTTTCAAATAATGTTTACAAGCTTAAATATCTCAAATAATAATAATAATAATAATAATAATAATAATAATAATAATATAGTTTTCAAATAAGTGTGGGATTTGAATTCAATCACGTTGAACTAGACAAATCTTATAAAAACAAAAGATTTTTTTTAAAGAGAATAAAATAATTTGTTCTACTATAGAATCTTCAAACTATTATTATACATGCAACACATATTAAGAAAGTTCAATTGATCTCGTTCTTTTACTTACAAAATTTTGATATTTTTTAAGAATTGATTTTCTAACTTCAATATCGATAATATAGATTTTATACAAAAATATTTGATACTAATAGATTGAAATTATAAAATTTTCAAAATTATGTACTAGAAATGAAAAGATACTTTAGAGATTTAAAATAATAAGGTGGACATAATAGAAAATCTTTAAAATTTGTTAGTATTACCCAATAGGTTTATCTCAATAGCTATACATGGACAAATTATTTGATAAAGTCGTCACAACGTGACGAACACTTTTTTGTCATTGGATGTAGAGAGAAAAGTTAGAAACAAGCAAATCACGAAATTCAAATTCAATAATTATTACGAGATAGTCATATTCTCAACACATCTTATAATTAATTTATGGTTAAATTTTATTTATTTTTTAAAAATGTCAATTAGTTTTATCTTTAAAGCATATTAATATTTTGCCTTTTTCCTAGAATGAAAATTATCATTATTATTATTATTTTACCAAGTTTGATAAAAATGACATACACCTTCAACCAAGATGTTAGATATTCAAATCTCTTCAATTATATATATATTGTTGTTGAACTAGAAGAAAAATATTATCTTTAAAAAAATAAGGATTATTTTTAAATATAGCAAAATTAGCAAAAATATTTACAAATACAGAAAAATTTCATTATCTATCAACGATAAATTGATAGACTTTTATCGCTCATCGATAGAAATCTGTCGTGGTCGATAGACAATTTGATTTTTTTTATTTATAATAAATTTCCAAAAAAATAAGTTAGTAATAATGAATAAATTTCAATTTTTAAAAAAATTTCTTTCTGACTAAAATTAAAGAAGTCGAACTCAACAAAAATTTCCAAATTTTACTTTTGAAATGAATTCGACTAAACAAGAACACGAGGGATCACTTGACCTTTGTATTGATTGGTTGGCAAAATTGTTTGGGCTCATTTACCAACCTCGAATTTAATGCTTTTTTTTTAATTAATAATATAGAAATCTTTAATAATAATAATAAAATAAATAAATATTTAATATATTGTTTTTTTTAATTATACATTAGATTGTTTTTAAGTATAGCAAAATAAACCAAAATATTTACAAATACAATAAAATTTTACAGTCTATCACCATATATTACTAATTGTTTCATTATAGTTTATCATAGATAAACTATGATATTTTATTATTATTTGTAAATATTTTCAACAGTTTTATAATTTTTTTCTACAACAATTACATAGGAATTCAACTTCTTAATATTAAAAAATGAAATGCATATCAACCACTACCCAACTAAGTTTACGTTGGCTTTTATAGTTTTTTTAATCAATATTTAATAGTCTATTTGTATAAAATAATATAAATTACAGTTACGTACAAAATATCTCTTCATACTTAATCGTATCTCAATCATTGAAACATTTGTTAGTTGAATACTCAATGGAAATGCTACCTCTCTTGCAATAACAATAAAAATAAATAAATTGTCAAAGTAAGTATAGTTCAACTAACATAAAACATATATATAACATGTATATTTAAATTTTATGTCTCATATAACTCGACTCTCAATTTTGTGTCTAGTGGATTGGTAAATTTTTAAAAATGTTTAATCCTATAGACACAAAATGAAAATTTGAAAGACCTCTTAGACACTTATTAAAGTTCAAAGATTTGTTGGACATTTTTAGACATCGAGAGACCAAATATATATAAACCTCAAAGTTTAGGGACTATAATTGTAACTTAACCAAAAAAAAAAAAACCCACAGATTTAATTAAAATTCAAAACTATAAACAATAATAATTTACCTAAAATTTTAAGAATTAAATTATACATTTAATCATTAAAATTTTAAGTTTGTATTTATTTGTTTCATAAATTTTTTCGAAGGGTATACTCGGATATAAAATTCAAATTTATATCAATATATTTTTTTTTTTAAAAAAAATTGAATTTGTCAAAAAATTTACACACAAATTAGAAGCAAATTAAACACTTTTGAACCTTTCTCTAATTTAACTAATTTTGAACCTTATCCTTCATTCCTTCTCCAAACTTTTCCAGACGGTTAGGTTCCACAGTATTACGCCACTCACAAAGCACCGGCAACTTCACAACCGGCGCCGGCGATCTCTCCACTACAGCCCTTCTCCCTATCCCTCTCAGCCCCAACAGACTCTCTCGCCATTTTCCCTTCCCCCATTTTCAGCCCATCCCATACTGCTCAATCTCAGTTCGAAATGGCTGCAACCCTTCTTCCCACTACCAAACTCCCTCCCCCTTGGCTGCTCCTCCCATGTGAAAGGCGTTTTCCAGTTTACTTATCCTTTCAATTACCTAATTTCGTCAATACCAATGGACCCATCTGCTCCATCTCTAAATCTAGGCCTCCGCAACCCCTTCTGAGCTCGTCTTCCCTAAAGAACGTAGCGGATTCTAATTTCGAGGTTTCCACTCTCCGTGAGATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGGCAAGTCTCCATATACCATCAAATCTTTTGAGTTTCCTCTTAATTTATCATTTTGTCTTATGGGGTGTTTTCTTTTTCCTTTATTTTCTTCTCTTAAATGATGTAGGACTGAGGAAATTGGATTTGTTTCCCCAACTGACGTGCAGAGGCAAGCCCTCCCAGTTCTTTTTTCGGGTCGGGATTGCGTGCTTCATGCGCAGGTCAATTCTGTGCTTATAAAGTAAATCTTCTCGGAGAATGGACTATTTTGGTTGTTTGTTTGTGTAGTATTTTGCACTTCTGTAATACTGTTCGTTACTTACTCAGTTACTCTTATCCTTTTAGACAGGTTCTGGGAAGACGCTGACATATTTGCTATTGATATTTTCTGTAATCAACGCTCATAAATCAGCTGTTCAGGCATTGATTGTAGTACCCACACGGGAGCTAGGAATGCAGGTAAGATTGGATTCTGTATCTTCCAAATTATGCTTGAACTTTATGTATTTTCTTCTCTCATTTGTTCTTATTTTTCATTCTATAGTTCTGAAGTTTGTTCTTATGCCTTGCTTTGACAAAAACTCATTTGGCAGAGTGACAAAAATGTCTGTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTTGGGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGCGCGATTTGATTGATTCTTCTTATGATTCTTCTTACATTTTGATGGTAATGTTGTTTTTGACCTGGTGGAATGGAAGTCAGGTTACAAAAGTTGCTCGGATGTTGGCCGCAAAGCCTGCTGCATCGGAACATGGGCTAAATTCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTAAAGGTGCTGCATTTGTCTCTCTTCTTAAGTAGACTCAATGGCTTTTATGTGAAGTTGTCAACAAACTGGAGAAGGGTTTTGGGTTAGGAAGTGTTCAATACTTATAGTTACTTGTTTAGAGTATATGTTTTTATGGCTTTTAGTTGCATTGCCATGGGTTGGCCTACTGGTCAATAAGAATCAATAGAAACAGTAAAATGCTTGGAGAGAATGAATACAAGCTATGGTGGCTTTTCTTTGGCAACAAAACATAGTAAGGTTAGAGAGTTGTCTTGTGAGAATAGTTGATGTATACTGTATATGCAATGAACACTCTCATGTATAGACAAAAAAATGCATTCCCATAGCCAACTTTGTTTTGAATTTCAAAAGTTTCACAAATGACCTTTGATTGTTGTTTTCCCCCCTTCTCGCTCGATTCTCTTAGATTGTGATTGATTGAAGAGAAGTTCTCATTTGGGTTATAAATTTGAGGTATAAAAATTTTCAGGCAGATCCCCCTGCAATACTGGTGGCGACAGTAGGGAGTTTGTGCCAAATGGTAGAGAGGCAATTTCTTGACCTTGGTTCGCTGAATGTGCTGGTAATTGATGAGGTACTTTCAAAGTAATTTTCTTTTCCGTTAGCTTCTTGGCACATACTTTCTGGACATCGTGAAATTTATTATGTCAAGTAGTAATTTACTTGTAGGCTTGCAGCCACCAAAACAACTTGTTAAACATTGATGTGTGCATTCCACATGCTTAGATTATAATCCAAATGTTCTAAAAATAAATAATCATAAAACTGCTGAAGTAAGCTTGTTTTAGACTTTTATTTCAAGGACTTGACAGCTTTTTCTTTTCTTTTCTGTTCTTTTTTCTTTTTCCATTCGTTTGCCAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCCCTAAAAAAACTATTGACATCATATTCTTCATTCAGTAACCGTCAGACTGTTTTTGCAAGTGCGTCAATTCCACAGCATAGGCATTTCCTTCATGATTGCGTACAGCAGAAGTGGACCAAGGTATATGGAGTTCTTTTTGGTCATTTCCAATTTCTGAGGCAATTCAGCCATTAATTTCATTAGCTTGATGGAACCTTCCCTCTCTTTCTCTAGCAGAATAATGTTGTCCATATTCATATTAACCCAATTCAGCCCATGCCATCATGTCTACTCCATAGATTTGTGGTACGAAATTTTATTTTTCATTCATGAGTATCCTCACTGGACACAATTTCTTTTTTTTTCTAAAAATTTTGATGTAACTTGCTGAAATATTATCTTTTGCTCGAATTTGACAGACATGTGAGAAGAACAAAAAGCACCAAACCTTCCTGTCCATATTACTAACAGATAAACCCCAGTCTGCAATCATCTTTGCCAGTGAGCAGGTTCGTGTTGATTGCCTATTATGAATAATGACCAAGTAAATAAGTAAAATATTCTAACAGTTGTCTTCGATTGAAGCTTTTAGATTCTCATGGTTTACTTTTTGTAAGAAAATTGAGCTATGTTATGTCAAATTATATTTGCTTGCTACGAATCATCAATGAATTGAATGCTCTAATTGATAAATATCCAGGAAATGGTTCTTATTGGCTGTTTTAGTAAGGGGGTTATAAATATCCTCCTCTGTTGCGCTTGAAAAATTAAAATCGAGAAAACATTGGATCACAAAACTGGACAAAATACAAGCGTGGCTGTAGCTGCATATCTAAGCCCATTATAGTGTTAGGAACAAAGGTAGTATGGACTGCCTTTGTCCCAAACCGTTAGAATGGGATGTCCAATGTAGTACTTGACTGGCTTGACTCTCTTATCTCAATAACTGGATTTTAGGGTGTTGTTCTCCAAGGTGCTTAAGTACCTAACAGATAGATTCTTCATATTTATAGGTTTGGAAATCTAGATTTTAGGAAAAGCTAGTTTTAGAAGGCCAATTGTATGAAATTGAAGAAACATAACTTATCTAGATTTTAGGAAAAGCTAGTTTTAGAAGGCCAATTGTATGAAATTGAAGAAACATAACTTGTCTGTTACATTGTATTTACAGTCAGAGAAGTCGAAGAAGGCCGGAAAGATTCCACCAACAACCTCCATGATTGATTTCTTGAAGACTTCTTATGGTGGTTGTTCCGACGTCATCCTTCTCGAGGAAGATGTGAATTACAATTTACGAGCATCTTCCCTATTGGTAAGCTTCGTATGCAATCTTTTGCCAACCATTAATTGAGTAGGGTGTTACAACAGCAATGGTATCAGCTAACTGGGATGTGATATCTGGTCTTGTATTCCTGCTCCAATGAATTATGAGTAGGGTGTTAAAATAAGCATGAGTTCTGAATTCTTTTATATCATTTTCCTTTTCCCAACCAAAAGGAAGATATTTTATTCTACCATCACTTTTCATCCACTATTTTCTTCCTACCAATGAATTATCTAACCCGTGGTATTCTTGACTTTTTGTCACAAGAATGTTAAGACTATGGAAGAACTCAGACTCGGGTTTTAAGTCAAAGCTGAGTCGTCAACACATTTTTTCATTTGAATTCTTGATTTTTGGATGCAGGAAGTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACATAGTGGCCAGGGGAATTGACTTGCCGGAAACAACTCATATATACAACTTTGACCTGCCTCGATGTGCTATCAACTATCTTCATCGAGCTGGACGAGCAGGTAGGAAACCATTTTCTGAGGAGAAGTGTGTGGTTACTAACCTTATAACATCAGAAGAGAGGTTTGTTCTGCAAAAATTTGAAAATGAACTACTGTTTATCTGTGAGGAGGTGGTTGTTTAGACAATGAATCTCGATGAAACTTCATTTGGATGCTTGACCAGGCTTGAAATTTCATGAGCTTTTAGTTTTGAGCCAAAATGATAAATATGAGTTTTTCCCCCTTTTTAG

mRNA sequence

ATGGTTGCCTTCCTCCACTGCCGAATTGTCCATTTCATGGTTCCACAGTATTACGCCACTCACAAAGCACCGGCAACTTCACAACCGGCGCCGGCGATCTCTCCACTACAGCCCTTCTCCCTATCCCTCTCAGCCCCAACAGACTCTCTCGCCATTTTCCCTTCCCCCATTTTCAGCCCATCCCATACTGCTCAATCTCAGTTCGAAATGGCTGCAACCCTTCTTCCCACTACCAAACTCCCTCCCCCTTGGCTGCTCCTCCCATGTGAAAGGCGTTTTCCAGTTTACTTATCCTTTCAATTACCTAATTTCGTCAATACCAATGGACCCATCTGCTCCATCTCTAAATCTAGGCCTCCGCAACCCCTTCTGAGCTCGTCTTCCCTAAAGAACGTAGCGGATTCTAATTTCGAGGTTTCCACTCTCCGTGAGATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGGCAAAGGCAAGCCCTCCCAGTTCTTTTTTCGGGTCGGGATTGCGTGCTTCATGCGCAGACAGGTTCTGGGAAGACGCTGACATATTTGCTATTGATATTTTCTGTAATCAACGCTCATAAATCAGCTGTTCAGGCATTGATTGTAGTACCCACACGGGAGCTAGGAATGCAGGTTACAAAAGTTGCTCGGATGTTGGCCGCAAAGCCTGCTGCATCGGAACATGGGCTAAATTCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTAAAGGCAGATCCCCCTGCAATACTGGTGGCGACAGTAGGGAGTTTGTGCCAAATGGTAGAGAGGCAATTTCTTGACCTTGGTTCGCTGAATGTGCTGGTAATTGATGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCCCTAAAAAAACTATTGACATCATATTCTTCATTCAGTAACCGTCAGACTGTTTTTGCAAGTGCGTCAATTCCACAGCATAGGCATTTCCTTCATGATTGCGTACAGCAGAAGTGGACCAAGAATAATGTTGTCCATATTCATATTAACCCAATTCAGCCCATGCCATCATGTCTACTCCATAGATTTGTGACATGTGAGAAGAACAAAAAGCACCAAACCTTCCTGTCCATATTACTAACAGATAAACCCCAGTCTGCAATCATCTTTGCCAGTGAGCAGTCAGAGAAGTCGAAGAAGGCCGGAAAGATTCCACCAACAACCTCCATGATTGATTTCTTGAAGACTTCTTATGGTGGTTGTTCCGACGTCATCCTTCTCGAGGAAGATGTGAATTACAATTTACGAGCATCTTCCCTATTGGAAGTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACATAGTGGCCAGGGGAATTGACTTGCCGGAAACAACTCATATATACAACTTTGACCTGCCTCGATGTGCTATCAACTATCTTCATCGAGCTGGACGAGCAGGTAGGAAACCATTTTCTGAGGAGAAGTGTGTGGTTACTAACCTTATAACATCAGAAGAGAGGTTTGTTCTGCAAAAATTTGAAAATGAACTACTGTTTATCTGTGAGGAGGTGGTTGTTTAGACAATGAATCTCGATGAAACTTCATTTGGATGCTTGACCAGGCTTGAAATTTCATGAGCTTTTAGTTTTGAGCCAAAATGATAAATATGAGTTTTTCCCCCTTTTTAG

Coding sequence (CDS)

ATGGTTGCCTTCCTCCACTGCCGAATTGTCCATTTCATGGTTCCACAGTATTACGCCACTCACAAAGCACCGGCAACTTCACAACCGGCGCCGGCGATCTCTCCACTACAGCCCTTCTCCCTATCCCTCTCAGCCCCAACAGACTCTCTCGCCATTTTCCCTTCCCCCATTTTCAGCCCATCCCATACTGCTCAATCTCAGTTCGAAATGGCTGCAACCCTTCTTCCCACTACCAAACTCCCTCCCCCTTGGCTGCTCCTCCCATGTGAAAGGCGTTTTCCAGTTTACTTATCCTTTCAATTACCTAATTTCGTCAATACCAATGGACCCATCTGCTCCATCTCTAAATCTAGGCCTCCGCAACCCCTTCTGAGCTCGTCTTCCCTAAAGAACGTAGCGGATTCTAATTTCGAGGTTTCCACTCTCCGTGAGATCTGCAATGGACACGTTCCCGAGCATATACTGCGCAGGCAAAGGCAAGCCCTCCCAGTTCTTTTTTCGGGTCGGGATTGCGTGCTTCATGCGCAGACAGGTTCTGGGAAGACGCTGACATATTTGCTATTGATATTTTCTGTAATCAACGCTCATAAATCAGCTGTTCAGGCATTGATTGTAGTACCCACACGGGAGCTAGGAATGCAGGTTACAAAAGTTGCTCGGATGTTGGCCGCAAAGCCTGCTGCATCGGAACATGGGCTAAATTCTTATGTTGTCATGGCTCTTTTAGATGGAGGCTTGTTGAGAAGACACAAGACTTGGTTAAAGGCAGATCCCCCTGCAATACTGGTGGCGACAGTAGGGAGTTTGTGCCAAATGGTAGAGAGGCAATTTCTTGACCTTGGTTCGCTGAATGTGCTGGTAATTGATGAGGTTGATTTCATGTTTAGTTCCTCAAAGCAAGTTAGTTCCCTAAAAAAACTATTGACATCATATTCTTCATTCAGTAACCGTCAGACTGTTTTTGCAAGTGCGTCAATTCCACAGCATAGGCATTTCCTTCATGATTGCGTACAGCAGAAGTGGACCAAGAATAATGTTGTCCATATTCATATTAACCCAATTCAGCCCATGCCATCATGTCTACTCCATAGATTTGTGACATGTGAGAAGAACAAAAAGCACCAAACCTTCCTGTCCATATTACTAACAGATAAACCCCAGTCTGCAATCATCTTTGCCAGTGAGCAGTCAGAGAAGTCGAAGAAGGCCGGAAAGATTCCACCAACAACCTCCATGATTGATTTCTTGAAGACTTCTTATGGTGGTTGTTCCGACGTCATCCTTCTCGAGGAAGATGTGAATTACAATTTACGAGCATCTTCCCTATTGGAAGTGAGACAAGGAGGAAGTTATCTTATTGTAGCAACTGACATAGTGGCCAGGGGAATTGACTTGCCGGAAACAACTCATATATACAACTTTGACCTGCCTCGATGTGCTATCAACTATCTTCATCGAGCTGGACGAGCAGGTAGGAAACCATTTTCTGAGGAGAAGTGTGTGGTTACTAACCTTATAACATCAGAAGAGAGGTTTGTTCTGCAAAAATTTGAAAATGAACTACTGTTTATCTGTGAGGAGGTGGTTGTTTAG

Protein sequence

MVAFLHCRIVHFMVPQYYATHKAPATSQPAPAISPLQPFSLSLSAPTDSLAIFPSPIFSPSHTAQSQFEMAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSLKNVADSNFEVSTLREICNGHVPEHILRRQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV

Homology

[Close]

BLAST of CcUC05G087230 vs. NCBI nr
Match: XP_038877244.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Benincasa hispida])

HSP 1 Score: 849.4 bits (2193), Expect = 1.7e-242
Identity = 432/473 (91.33%), Postives = 444/473 (93.87%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAATLLPT KL PP LLL  ERRFPVYL+FQLPNF+N+ GPICSI K RPPQ LLSSSSL
Sbjct: 1   MAATLLPTAKLHPPRLLLSSERRFPVYLAFQLPNFINSFGPICSIFKFRPPQALLSSSSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
           KNVADSNFEVSTLREICNGHVPEHILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVADSNFEVSTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYV 249
           GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAA+P  SEHGLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAARPPDSEHGLNSYV 180

Query: 250 VMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 309
           VMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVERQFL+LGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPTILVATVGSLCQMVERQFLNLGSLNVLVIDEVDFMFSS 240

Query: 310 SKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM 369
           SKQVSSLKKLLTSYSSF+NRQTVFASASIPQHRHFLHDC+QQKWTKNNV+HIHINPIQPM
Sbjct: 241 SKQVSSLKKLLTSYSSFNNRQTVFASASIPQHRHFLHDCIQQKWTKNNVIHIHINPIQPM 300

Query: 370 PSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLK 429
           PSCLLHRFVTCEKNKKHQ FLS+LLTDKPQSAIIF SEQSEKSKKAGKIPPTT MIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQAFLSLLLTDKPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 430 TSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 489
           TSYGGCSD+ILLEEDVNYNLRASSL EVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 TSYGGCSDIILLEEDVNYNLRASSLSEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 490 RCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           RCAI+YLHRAGR GRKPFSEEKCVVTNLITSEERFVLQKFENE+LFICEEVVV
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENEMLFICEEVVV 473

[Close]

BLAST of CcUC05G087230 vs. NCBI nr
Match: XP_011650984.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X4 [Cucumis sativus] >KGN57008.1 hypothetical protein Csa_011037 [Cucumis sativus])

HSP 1 Score: 835.9 bits (2158), Expect = 2.0e-238
Identity = 428/473 (90.49%), Postives = 438/473 (92.60%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAAT LPTTK PPPWLLL  ER FPV+LSFQLPNF+NTNGPI S SKSRP Q LLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
           KNVA+SNFE STLREICNGHVPEHILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYV 249
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELGMQVTKVARMLAAKPAASE GLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 250 VMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 309
           VMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 310 SKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM 369
           SKQVSSLKKLLTSYSSFSNRQT+FASASIPQHRHFLHDC+QQKWTK+ VVHIHIN  QPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300

Query: 370 PSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLK 429
           PSCLLHRFVTCEKNKKHQT L++LLTD PQSAIIF SEQSEKSKKAGKIPPTT MIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 430 TSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 489
            SYGGCSDVILLEEDVNYNLRASSL E+RQGGSYLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 490 RCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           RCAI+YLHRAGR GRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 473

[Close]

BLAST of CcUC05G087230 vs. NCBI nr
Match: XP_031738178.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X3 [Cucumis sativus])

HSP 1 Score: 829.7 bits (2142), Expect = 1.4e-236
Identity = 428/478 (89.54%), Postives = 438/478 (91.63%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAAT LPTTK PPPWLLL  ER FPV+LSFQLPNF+NTNGPI S SKSRP Q LLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
           KNVA+SNFE STLREICNGHVPEHILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQ-----VTKVARMLAAKPAASEHG 249
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELGMQ     VTKVARMLAAKPAASE G
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVRLNSVTKVARMLAAKPAASEDG 180

Query: 250 LNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVD 309
           LNSYVVMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVERQFLDLGSLNVLVIDEVD
Sbjct: 181 LNSYVVMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVD 240

Query: 310 FMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHIN 369
           FMFSSSKQVSSLKKLLTSYSSFSNRQT+FASASIPQHRHFLHDC+QQKWTK+ VVHIHIN
Sbjct: 241 FMFSSSKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHIN 300

Query: 370 PIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSM 429
             QPMPSCLLHRFVTCEKNKKHQT L++LLTD PQSAIIF SEQSEKSKKAGKIPPTT M
Sbjct: 301 STQPMPSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLM 360

Query: 430 IDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIY 489
           IDFLK SYGGCSDVILLEEDVNYNLRASSL E+RQGGSYLIVATDIVARGIDLPETTHIY
Sbjct: 361 IDFLKASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIY 420

Query: 490 NFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           NFDLPRCAI+YLHRAGR GRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV
Sbjct: 421 NFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 478

[Close]

BLAST of CcUC05G087230 vs. NCBI nr
Match: XP_008438702.1 (PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 827.8 bits (2137), Expect = 5.4e-236
Identity = 424/473 (89.64%), Postives = 434/473 (91.75%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAAT LPTTK PPPWLLL  ER FPV+LSFQLPNF+NTNGPI S SK RP Q L+SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
           KNVA+SNFE STLREICNG VPEHILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEGSTLREICNGRVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYV 249
           GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASE GLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 250 VMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 309
           VMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 310 SKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM 369
           SKQVSSLKKLLTSYSSFSNRQT+FASASIPQHRHFL DC+QQKWTKN V+HIHIN  QPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLQDCIQQKWTKNTVIHIHINSTQPM 300

Query: 370 PSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLK 429
           PSCLLHRFVTCEKNKKHQT L++LLTD PQSAIIF SEQSEKSKKAGKIPPTT MIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 430 TSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 489
            SYGGCSDVILLEEDVNYNLRASSL EVRQGG YLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSEVRQGGCYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 490 RCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           RCAI+YLHRAGR GRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEV V
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVAV 473

[Close]

BLAST of CcUC05G087230 vs. NCBI nr
Match: XP_031738177.1 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 819.7 bits (2116), Expect = 1.5e-233
Identity = 428/504 (84.92%), Postives = 438/504 (86.90%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAAT LPTTK PPPWLLL  ER FPV+LSFQLPNF+NTNGPI S SKSRP Q LLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
           KNVA+SNFE STLREICNGHVPEHILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYV 249
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELGMQVTKVARMLAAKPAASE GLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 250 VMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 309
           VMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 310 SKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM 369
           SKQVSSLKKLLTSYSSFSNRQT+FASASIPQHRHFLHDC+QQKWTK+ VVHIHIN  QPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300

Query: 370 PSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASE---------------------- 429
           PSCLLHRFVTCEKNKKHQT L++LLTD PQSAIIF SE                      
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQENLVLGSQSVQIVAKELKNCN 360

Query: 430 ---------QSEKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVR 489
                    QSEKSKKAGKIPPTT MIDFLK SYGGCSDVILLEEDVNYNLRASSL E+R
Sbjct: 361 LSDSVTLDLQSEKSKKAGKIPPTTLMIDFLKASYGGCSDVILLEEDVNYNLRASSLSELR 420

Query: 490 QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLI 531
           QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAI+YLHRAGR GRKPFSEEKCVVTNLI
Sbjct: 421 QGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAIDYLHRAGRTGRKPFSEEKCVVTNLI 480

[Close]

BLAST of CcUC05G087230 vs. ExPASy Swiss-Prot
Match: Q3E9C3 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RH58 PE=2 SV=1)

HSP 1 Score: 559.3 bits (1440), Expect = 4.7e-158
Identity = 282/438 (64.38%), Postives = 345/438 (78.77%), Query Frame = 0


Query: 116 KSRPPQPLLSSSSLKNVADSNFEVS-----------TLREICNGHVPEHILRR------- 175
           KS P   ++   +L+ VA+++ E+            TLR+IC G VPEHIL R       
Sbjct: 41  KSSPSSRII---NLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFV 100

Query: 176 -----QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELG 235
                QR+ALP LF+GRDC+LHAQTGSGKTLTYLLLIFS+IN  +S+VQA+IVVPTRELG
Sbjct: 101 FPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELG 160

Query: 236 MQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQM 295
           MQVTKVARMLAAK   SE  +    VMALLDGG LRRHK+WLKA+PPAILVATV SLC M
Sbjct: 161 MQVTKVARMLAAK---SEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHM 220

Query: 296 VERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHF 355
           +E+    + S+ VLV+DEVDF+F SSKQV S++KLLTS+SS   RQTVFASASIPQH+HF
Sbjct: 221 LEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHF 280

Query: 356 LHDCVQQKWTKNNVVHIHINPIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIF 415
           +HDC+QQKWTK +VVH+H++ I PMP CLLHRFV CEK  KHQ  L++L +D P+SAIIF
Sbjct: 281 VHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIF 340

Query: 416 ASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYL 475
             EQSEKSKKAG  P TT +++FLKTSY G  +++LLE D+N+N RA+SL E+RQGG +L
Sbjct: 341 VGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFL 400

Query: 476 IVATDIVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERF 531
           +V+TDI ARGIDLPETTHI+NFDLP+   +YLHRAGRAGRKPFS+ KC+V NLITSEERF
Sbjct: 401 LVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERF 460

[Close]

BLAST of CcUC05G087230 vs. ExPASy Swiss-Prot
Match: Q0JFN7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0970600 PE=2 SV=2)

HSP 1 Score: 503.1 bits (1294), Expect = 4.0e-141
Identity = 251/403 (62.28%), Postives = 317/403 (78.66%), Query Frame = 0


Query: 140 STLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQTGSGKTLTYLL 199
           +TLRE+C G VPEH+L+R            Q Q+LPVL SG+DC+LHAQTGSGKTL YLL
Sbjct: 38  ATLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLL 97

Query: 200 LIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLL 259
            +FS I+  +S+VQAL+VVPTRELGMQVTKVAR+LAAK         +  VMALLDGG+L
Sbjct: 98  SVFSAIDFGRSSVQALVVVPTRELGMQVTKVARILAAK---------ACTVMALLDGGML 157

Query: 260 RRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKL 319
           RR K+W+KA+PPAI+VATV SLCQM+E++   L S+ VLVIDEVDF+F SSKQVSSL+K+
Sbjct: 158 RRQKSWVKAEPPAIIVATVASLCQMIEKRAFSLQSMRVLVIDEVDFIFGSSKQVSSLRKI 217

Query: 320 LTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPMPSCLLHRFVT 379
           LTSYS+ S+RQT+FASASIPQH  F+HDCVQ KWTK +VVH+H+NP+QPMPS L H++  
Sbjct: 218 LTSYSAASSRQTIFASASIPQHNRFVHDCVQHKWTKTDVVHVHVNPVQPMPSHLQHKYAI 277

Query: 380 CEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSDVI 439
           C K ++    LS+L  D P+S IIF +EQSEKSKKAG  P TT +++FL+T+Y G  +V+
Sbjct: 278 CSKKERLHVLLSLLEKDAPKSGIIFVAEQSEKSKKAGHPPSTTVVVEFLRTTYMGSLEVL 337

Query: 440 LLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAINYLHRA 499
           LLEED+N+N RA+S  EV+ G  +L+V+TDI +RG DLP+T+HIYNFDLP+ AI+YLHRA
Sbjct: 338 LLEEDMNFNARATSFTEVK-GKGFLLVSTDIASRGFDLPQTSHIYNFDLPKTAIDYLHRA 397

Query: 500 GRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           GR GR+PFS+  C VT LIT +E FVLQ+F+NEL F CEE+ V
Sbjct: 398 GRTGREPFSKLACSVTTLITEDEHFVLQRFQNELKFHCEELPV 430

[Close]

BLAST of CcUC05G087230 vs. ExPASy Swiss-Prot
Match: Q81DF9 (DEAD-box ATP-dependent RNA helicase CshE OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373 / NRRL B-3711) OX=226900 GN=cshE PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-28
Identity = 98/336 (29.17%), Postives = 166/336 (49.40%), Query Frame = 0


Query: 158 QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQV-T 217
           Q +A+PV+ SG+D +  A+TG+GKTL ++L I   I+   S VQALIV PTREL +Q+ T
Sbjct: 32  QEKAIPVILSGKDIIGQAKTGTGKTLAFVLPILEKIDPECSDVQALIVAPTRELALQITT 91

Query: 218 KVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQ 277
           ++ +ML  +   +        V+A+  G  + +    LK +   I+VAT G L   + R+
Sbjct: 92  EIKKMLVQREDIN--------VLAIYGGQDVAQQLRKLKGN-THIVVATPGRLLDHIRRE 151

Query: 278 FLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDC 337
            +DL +L+ +V+DE D M      +  ++ +L    +  ++QT+  SA++P+    L   
Sbjct: 152 TIDLSNLSTIVLDEADQMLYFG-FLYDIEDILD--ETPGSKQTMLFSATMPKDIKKL--- 211

Query: 338 VQQKWTKNNVVHIHINPIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQ 397
              K   +    I +   +     +  R +      K      ++  D+P  A+IF   +
Sbjct: 212 --AKRYMDEPQMIQVQSEEVTVDTIEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTK 271

Query: 398 SEKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVAT 457
              SK          + D LK     C++   L  D+    R   +   R+     ++AT
Sbjct: 272 VRASK----------LYDNLKGLGYNCAE---LHGDIPQAKRERVMKSFREAKIQYLIAT 331

Query: 458 DIVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGR 493
           D+ ARG+D+   TH++N+D+P    +Y+HR GR GR
Sbjct: 332 DVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGR 337

[Close]

BLAST of CcUC05G087230 vs. ExPASy Swiss-Prot
Match: Q4R8K5 (Eukaryotic initiation factor 4A-I OS=Macaca fascicularis OX=9541 GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 2.0e-28
Identity = 111/393 (28.24%), Postives = 175/393 (44.53%), Query Frame = 0


Query: 134 DSNFEVSTLREICNGHVPEHILRRQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVI 193
           D N   S LR I      +    +QR  LP +  G D +  AQ+G+GKT T+ + I   I
Sbjct: 36  DMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQI 95

Query: 194 NAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTW 253
                A QAL++ PTREL  Q+ KV   L     AS H        A + G  +R     
Sbjct: 96  ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH--------ACIGGTNVRAEVQK 155

Query: 254 LKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS--SKQVSSLKKLLTSY 313
           L+ + P I+V T G +  M+ R++L    + + V+DE D M S     Q+  + + L   
Sbjct: 156 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN-- 215

Query: 314 SSFSNRQTVFASASIPQH-----RHFLHDCVQQKWTKNNVVHIHINPIQPMPSCLLHRFV 373
              SN Q V  SA++P       + F+ D ++    K  +    I             ++
Sbjct: 216 ---SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF----------YI 275

Query: 374 TCEKNK-KHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSD 433
             E+ + K  T   +  T     A+IF + +    +K   +       DF  ++  G   
Sbjct: 276 NVEREEWKLDTLCDLYETLTITQAVIFINTR----RKVDWLTEKMHARDFTASAMHG--- 335

Query: 434 VILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAINYLH 493
                 D++   R   + E R G S +++ TD++ARGID+ + + + N+DLP    NY+H
Sbjct: 336 ------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 388

Query: 494 RAGRAGRKPFSEEKCVVTNLITSEERFVLQKFE 519
           R GR GR      K V  N++T E++  L+  E
Sbjct: 396 RIGRGGR---FGRKGVAINMVTEEDKRTLRDIE 388

[Close]

BLAST of CcUC05G087230 vs. ExPASy Swiss-Prot
Match: Q3SZ54 (Eukaryotic initiation factor 4A-I OS=Bos taurus OX=9913 GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.7e-28
Identity = 111/393 (28.24%), Postives = 175/393 (44.53%), Query Frame = 0


Query: 134 DSNFEVSTLREICNGHVPEHILRRQRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVI 193
           D N   S LR I      +    +QR  LP +  G D +  AQ+G+GKT T+ + I   I
Sbjct: 36  DMNLSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQI 95

Query: 194 NAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTW 253
                A QAL++ PTREL  Q+ KV   L     AS H        A + G  +R     
Sbjct: 96  ELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH--------ACIGGTNVRAEVQK 155

Query: 254 LKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS--SKQVSSLKKLLTSY 313
           L+ + P I+V T G +  M+ R++L    + + V+DE D M S     Q+  + + L   
Sbjct: 156 LQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN-- 215

Query: 314 SSFSNRQTVFASASIPQH-----RHFLHDCVQQKWTKNNVVHIHINPIQPMPSCLLHRFV 373
              SN Q V  SA++P       + F+ D ++    K  +    I             ++
Sbjct: 216 ---SNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQF----------YI 275

Query: 374 TCEKNK-KHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSD 433
             E+ + K  T   +  T     A+IF + +    +K   +       DF  ++  G   
Sbjct: 276 NVEREEWKLDTLCDLYETLTITQAVIFINTR----RKVDWLTEKMHARDFTVSAMHG--- 335

Query: 434 VILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLPRCAINYLH 493
                 D++   R   + E R G S +++ TD++ARGID+ + + + N+DLP    NY+H
Sbjct: 336 ------DMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIH 388

Query: 494 RAGRAGRKPFSEEKCVVTNLITSEERFVLQKFE 519
           R GR GR      K V  N++T E++  L+  E
Sbjct: 396 RIGRGGR---FGRKGVAINMVTEEDKRTLRDIE 388

[Close]

BLAST of CcUC05G087230 vs. ExPASy TrEMBL
Match: A0A0A0L5M9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149880 PE=4 SV=1)

HSP 1 Score: 835.9 bits (2158), Expect = 9.5e-239
Identity = 428/473 (90.49%), Postives = 438/473 (92.60%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAAT LPTTK PPPWLLL  ER FPV+LSFQLPNF+NTNGPI S SKSRP Q LLSSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERSFPVHLSFQLPNFINTNGPIYSTSKSRPLQALLSSSSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
           KNVA+SNFE STLREICNGHVPEHILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEASTLREICNGHVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYV 249
           GSGKTLTYLLLIFSVINA KSAVQALIVVPTRELGMQVTKVARMLAAKPAASE GLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAKKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 250 VMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 309
           VMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 310 SKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM 369
           SKQVSSLKKLLTSYSSFSNRQT+FASASIPQHRHFLHDC+QQKWTK+ VVHIHIN  QPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKSTVVHIHINSTQPM 300

Query: 370 PSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLK 429
           PSCLLHRFVTCEKNKKHQT L++LLTD PQSAIIF SEQSEKSKKAGKIPPTT MIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 430 TSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 489
            SYGGCSDVILLEEDVNYNLRASSL E+RQGGSYLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSELRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 490 RCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           RCAI+YLHRAGR GRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 473

[Close]

BLAST of CcUC05G087230 vs. ExPASy TrEMBL
Match: A0A1S3AX19 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103483729 PE=4 SV=1)

HSP 1 Score: 827.8 bits (2137), Expect = 2.6e-236
Identity = 424/473 (89.64%), Postives = 434/473 (91.75%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAAT LPTTK PPPWLLL  ER FPV+LSFQLPNF+NTNGPI S SK RP Q L+SSSSL
Sbjct: 1   MAATFLPTTKFPPPWLLLSSERPFPVHLSFQLPNFINTNGPIYSTSKFRPLQALMSSSSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
           KNVA+SNFE STLREICNG VPEHILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  KNVAESNFEGSTLREICNGRVPEHILRRTEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYV 249
           GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASE GLNSYV
Sbjct: 121 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEDGLNSYV 180

Query: 250 VMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 309
           VMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKTWLKADPPEILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 310 SKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM 369
           SKQVSSLKKLLTSYSSFSNRQT+FASASIPQHRHFL DC+QQKWTKN V+HIHIN  QPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLQDCIQQKWTKNTVIHIHINSTQPM 300

Query: 370 PSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLK 429
           PSCLLHRFVTCEKNKKHQT L++LLTD PQSAIIF SEQSEKSKKAGKIPPTT MIDFLK
Sbjct: 301 PSCLLHRFVTCEKNKKHQTLLTLLLTDIPQSAIIFVSEQSEKSKKAGKIPPTTLMIDFLK 360

Query: 430 TSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 489
            SYGGCSDVILLEEDVNYNLRASSL EVRQGG YLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 ASYGGCSDVILLEEDVNYNLRASSLSEVRQGGCYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 490 RCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           RCAI+YLHRAGR GRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEV V
Sbjct: 421 RCAIDYLHRAGRTGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVAV 473

[Close]

BLAST of CcUC05G087230 vs. ExPASy TrEMBL
Match: A0A6J1C9C7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Momordica charantia OX=3673 GN=LOC111009507 PE=4 SV=1)

HSP 1 Score: 789.6 bits (2038), Expect = 7.8e-225
Identity = 401/473 (84.78%), Postives = 423/473 (89.43%), Query Frame = 0


Query: 70  MAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSSSL 129
           MAATLLPTTK PPPWLLL  ER  PVY S QLP F N+NGP+CS SK RPP    SS SL
Sbjct: 1   MAATLLPTTKSPPPWLLLSSERLHPVYFSVQLPKFNNSNGPLCSTSKFRPPLAFPSSFSL 60

Query: 130 KNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHAQT 189
            NV DSNFE STLREIC+GHVP+HILRR            QRQALPVLFSGRDCVLHAQT
Sbjct: 61  NNVVDSNFEASTLREICDGHVPDHILRRAEEIGFVAPTDVQRQALPVLFSGRDCVLHAQT 120

Query: 190 GSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPAASEHGLNSYV 249
           GSGKTLTYLLLIFS+INA +SAVQAL+VVPTRELGMQVTKVARMLAAK AASE G  SYV
Sbjct: 121 GSGKTLTYLLLIFSIINAQRSAVQALVVVPTRELGMQVTKVARMLAAKSAASELGQKSYV 180

Query: 250 VMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 309
           VMALLDGGLLRRHK WLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS
Sbjct: 181 VMALLDGGLLRRHKNWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSS 240

Query: 310 SKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM 369
           SKQVSSLKKLLTSYSSFSNRQT+FASASIPQHRHFLHDC+QQKWTKN+V+HIH+NP+QPM
Sbjct: 241 SKQVSSLKKLLTSYSSFSNRQTIFASASIPQHRHFLHDCIQQKWTKNDVMHIHVNPMQPM 300

Query: 370 PSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLK 429
           PSCLLHRFV C+KNKKHQTF S+LLTD+PQSAIIF SEQSEKSKKAG I PTT MIDFLK
Sbjct: 301 PSCLLHRFVICDKNKKHQTFRSLLLTDEPQSAIIFVSEQSEKSKKAGNISPTTMMIDFLK 360

Query: 430 TSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFDLP 489
           TSYGG SD+ILLEED+NYNLRASSL EVRQGG YLIVATDIVARGIDLPETTHIYNFDLP
Sbjct: 361 TSYGGYSDIILLEEDMNYNLRASSLSEVRQGGGYLIVATDIVARGIDLPETTHIYNFDLP 420

Query: 490 RCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           R AI+YLHRAGR GRKPFS+EKCVV NLITS+ERFVLQKFENELLF CEE+VV
Sbjct: 421 RTAIDYLHRAGRTGRKPFSKEKCVVNNLITSQERFVLQKFENELLFFCEELVV 473

[Close]

BLAST of CcUC05G087230 vs. ExPASy TrEMBL
Match: A0A6J1EZV7 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441060 PE=4 SV=1)

HSP 1 Score: 764.6 bits (1973), Expect = 2.7e-217
Identity = 396/536 (73.88%), Postives = 439/536 (81.90%), Query Frame = 0


Query: 8   RIVHFMVPQYYATHKAPATSQPAPAISPLQPFSLSLSAPTDSLAIFPSPIFSPSHTAQSQ 67
           R++H    +   T + P +  P+ + SPL              ++   P+          
Sbjct: 38  RLLHHRRRELSITTRLPISLTPSSSSSPLS-------------SLITHPVL---RRRGIP 97

Query: 68  FEMAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSS 127
           F MAATLLP+TK+PPPWL +  ERR+P+Y    LP  +N NGPICS  K RPP+  +SSS
Sbjct: 98  FPMAATLLPSTKIPPPWLPVSSERRYPIY----LPKLINNNGPICSTPKFRPPKAFMSSS 157

Query: 128 SLKNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHA 187
           SL N  DSNFE S+LREICNG+VP+HIL R            QRQALPVLFSGRDCVLHA
Sbjct: 158 SLNNAVDSNFEASSLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGRDCVLHA 217

Query: 188 QTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPA-ASEHGLN 247
           QTGSGKTLTYLLLIFSVINA KSAVQALIVVPTRELG+QVTKVARMLAAKPA A E G  
Sbjct: 218 QTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQK 277

Query: 248 SYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFM 307
           SYVVMALLDGGLLRRHKTWLKADPP ILVATVGSLCQMVER+FLDL SL VL+IDEVDFM
Sbjct: 278 SYVVMALLDGGLLRRHKTWLKADPPCILVATVGSLCQMVERRFLDLASLKVLIIDEVDFM 337

Query: 308 FSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPI 367
           FSSSKQVSSLKK+LTSYS FSNRQTVFASASIPQHRHFL +C+QQKWTKNN++H+HIN +
Sbjct: 338 FSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNIIHVHINAV 397

Query: 368 QPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMID 427
           QPMPSCLLHRFV C+KNKKHQTFLS+LLTDKPQSAIIF SEQSE+SKKAGKIPP T MID
Sbjct: 398 QPMPSCLLHRFVMCDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMID 457

Query: 428 FLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNF 487
           FLKTSY GCSDV+LL+EDVN+N RA+SL EVRQGGSYLIVATD+VARGIDLPETTHIYNF
Sbjct: 458 FLKTSYDGCSDVVLLDEDVNFNSRAASLSEVRQGGSYLIVATDLVARGIDLPETTHIYNF 517

Query: 488 DLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           DLPR AI+YLHRAGR GRKPFSEEKC+VTNLITS ERFVLQKFENELLF C+E+VV
Sbjct: 518 DLPRTAIDYLHRAGRTGRKPFSEEKCMVTNLITSVERFVLQKFENELLFTCDELVV 553

[Close]

BLAST of CcUC05G087230 vs. ExPASy TrEMBL
Match: A0A6J1I860 (DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111472257 PE=4 SV=1)

HSP 1 Score: 753.8 bits (1945), Expect = 4.8e-214
Identity = 398/536 (74.25%), Postives = 436/536 (81.34%), Query Frame = 0


Query: 8   RIVHFMVPQYYATHKAPATSQPAPAISPLQPFSLSLSAPTDSLAIFPSPIFSPSHTAQSQ 67
           R++H    +   T + P +  P+ + SPL              ++   P+          
Sbjct: 38  RLLHHRRRELSITTRLPISLTPSSSSSPLS-------------SLITHPVL---RRRGIP 97

Query: 68  FEMAATLLPTTKLPPPWLLLPCERRFPVYLSFQLPNFVNTNGPICSISKSRPPQPLLSSS 127
           F MAATLLP+TK+PPP L +  ERR PVY    LP  +N+NGPICS  K RP +  +SSS
Sbjct: 98  FPMAATLLPSTKIPPPRLPVSSERRHPVY----LPKLINSNGPICSTPKFRPSKAFMSSS 157

Query: 128 SLKNVADSNFEVSTLREICNGHVPEHILRR------------QRQALPVLFSGRDCVLHA 187
           S  N  DSNFE STLREICNG+VP+HIL R            QRQALPVLFSG+DCVLHA
Sbjct: 158 SSNNAVDSNFEASTLREICNGYVPDHILDRAEEIGFVAPTGVQRQALPVLFSGQDCVLHA 217

Query: 188 QTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTKVARMLAAKPA-ASEHGLN 247
           QTGSGKTLTYLLLIFSVINA KSAVQALIVVPTRELG+QVTKVARMLAAKPA A E G  
Sbjct: 218 QTGSGKTLTYLLLIFSVINAQKSAVQALIVVPTRELGIQVTKVARMLAAKPATADEVGQK 277

Query: 248 SYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQFLDLGSLNVLVIDEVDFM 307
           SYVVMALLDGGLLRRHKTWLKADP +ILVATVGSLCQMVER+FLDL SL VLVIDEVDFM
Sbjct: 278 SYVVMALLDGGLLRRHKTWLKADPSSILVATVGSLCQMVERRFLDLASLKVLVIDEVDFM 337

Query: 308 FSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPI 367
           FSSSKQVSSLKK+LTSYS FSNRQTVFASASIPQHRHFL +C+QQKWTKNNV+HIHIN +
Sbjct: 338 FSSSKQVSSLKKILTSYSMFSNRQTVFASASIPQHRHFLQECIQQKWTKNNVIHIHINAV 397

Query: 368 QPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMID 427
           QPMPSCLLHRFV C+KNKKHQTFLS+LLTDKPQSAIIF SEQSE+SKKAGKIPP T MID
Sbjct: 398 QPMPSCLLHRFVICDKNKKHQTFLSVLLTDKPQSAIIFVSEQSERSKKAGKIPPATLMID 457

Query: 428 FLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNF 487
           FLKTSY GCSDV+LL+EDVN+N RASSL EVRQGGSYLIVATD+VARGIDLPETTHIYNF
Sbjct: 458 FLKTSYDGCSDVVLLDEDVNFNSRASSLSEVRQGGSYLIVATDLVARGIDLPETTHIYNF 517

Query: 488 DLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENELLFICEEVVV 531
           DLPR AI+YLHRAGR GRKPFSEEKCVVTNLITS ERFVLQKFENELLF C+E+VV
Sbjct: 518 DLPRTAIDYLHRAGRTGRKPFSEEKCVVTNLITSVERFVLQKFENELLFTCDELVV 553

[Close]

BLAST of CcUC05G087230 vs. TAIR 10
Match: AT5G19210.2 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 559.3 bits (1440), Expect = 3.3e-159
Identity = 282/438 (64.38%), Postives = 345/438 (78.77%), Query Frame = 0


Query: 116 KSRPPQPLLSSSSLKNVADSNFEVS-----------TLREICNGHVPEHILRR------- 175
           KS P   ++   +L+ VA+++ E+            TLR+IC G VPEHIL R       
Sbjct: 41  KSSPSSRII---NLQAVAETSSEIESNSVTETTVPLTLRQICQGFVPEHILHRMEEIGFV 100

Query: 176 -----QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELG 235
                QR+ALP LF+GRDC+LHAQTGSGKTLTYLLLIFS+IN  +S+VQA+IVVPTRELG
Sbjct: 101 FPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLINPQRSSVQAVIVVPTRELG 160

Query: 236 MQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQM 295
           MQVTKVARMLAAK   SE  +    VMALLDGG LRRHK+WLKA+PPAILVATV SLC M
Sbjct: 161 MQVTKVARMLAAK---SEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHM 220

Query: 296 VERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHF 355
           +E+    + S+ VLV+DEVDF+F SSKQV S++KLLTS+SS   RQTVFASASIPQH+HF
Sbjct: 221 LEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHF 280

Query: 356 LHDCVQQKWTKNNVVHIHINPIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIF 415
           +HDC+QQKWTK +VVH+H++ I PMP CLLHRFV CEK  KHQ  L++L +D P+SAIIF
Sbjct: 281 VHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIF 340

Query: 416 ASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYL 475
             EQSEKSKKAG  P TT +++FLKTSY G  +++LLE D+N+N RA+SL E+RQGG +L
Sbjct: 341 VGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFL 400

Query: 476 IVATDIVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERF 531
           +V+TDI ARGIDLPETTHI+NFDLP+   +YLHRAGRAGRKPFS+ KC+V NLITSEERF
Sbjct: 401 LVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERF 460

[Close]

BLAST of CcUC05G087230 vs. TAIR 10
Match: AT5G19210.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 449.9 bits (1156), Expect = 2.8e-126
Identity = 217/318 (68.24%), Postives = 264/318 (83.02%), Query Frame = 0


Query: 213 MQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQM 272
           MQVTKVARMLAAK   SE  +    VMALLDGG LRRHK+WLKA+PPAILVATV SLC M
Sbjct: 1   MQVTKVARMLAAK---SEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVATVASLCHM 60

Query: 273 VERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHF 332
           +E+    + S+ VLV+DEVDF+F SSKQV S++KLLTS+SS   RQTVFASASIPQH+HF
Sbjct: 61  LEKHIFRIDSVRVLVVDEVDFLFYSSKQVGSVRKLLTSFSSCDKRQTVFASASIPQHKHF 120

Query: 333 LHDCVQQKWTKNNVVHIHINPIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIF 392
           +HDC+QQKWTK +VVH+H++ I PMP CLLHRFV CEK  KHQ  L++L +D P+SAIIF
Sbjct: 121 VHDCIQQKWTKRDVVHVHVSAIMPMPLCLLHRFVMCEKTNKHQVLLALLESDAPESAIIF 180

Query: 393 ASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYL 452
             EQSEKSKKAG  P TT +++FLKTSY G  +++LLE D+N+N RA+SL E+RQGG +L
Sbjct: 181 VGEQSEKSKKAGNDPSTTLLMEFLKTSYKGSLEILLLEGDMNFNSRAASLTEIRQGGGFL 240

Query: 453 IVATDIVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERF 512
           +V+TDI ARGIDLPETTHI+NFDLP+   +YLHRAGRAGRKPFS+ KC+V NLITSEERF
Sbjct: 241 LVSTDIAARGIDLPETTHIFNFDLPQTVTDYLHRAGRAGRKPFSDRKCIVANLITSEERF 300

Query: 513 VLQKFENELLFICEEVVV 531
           VLQ++ENEL+F CEE+++
Sbjct: 301 VLQRYENELMFSCEEMML 315

[Close]

BLAST of CcUC05G087230 vs. TAIR 10
Match: AT1G12770.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 114.0 bits (284), Expect = 3.7e-25
Identity = 110/406 (27.09%), Postives = 180/406 (44.33%), Query Frame = 0


Query: 158 QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVI-------------NAHKSAVQALI 217
           Q  A+P +  G D V+ + TGSGKTL YLL I S I             N  ++ +QA+I
Sbjct: 137 QSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMI 196

Query: 218 VVPTRELGMQVTKVARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVA 277
           V P+RELGMQ+ +    L          ++  +V  L+ G    R +  LK + PAI+V 
Sbjct: 197 VAPSRELGMQIVREVEKLLGP-------VHRRMVQQLVGGANRMRQEEALKKNKPAIVVG 256

Query: 278 TVGSLCQMVERQFLDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFS--------- 337
           T G + ++ +   L       LV+DEVD + S + +   + ++L      S         
Sbjct: 257 TPGRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFR-EDIHRILEHVGKRSGAGPKGEVD 316

Query: 338 ---NRQTVFASASIPQHRHFLHDCVQQKWTKNNVVHIHINPIQPM----PSCLLHRF--V 397
              NRQT+  SA++P    F      + W+   V+ +  N + P+    PS  +      
Sbjct: 317 ERANRQTILVSATVP----FSVIRAAKSWSHEPVL-VQANKVTPLDTVQPSAPVMSLTPT 376

Query: 398 TCEKNKKHQTFL-SILLTDKPQSAIIFASEQSEKSKKAGKIPPTTSMIDFLKTSYGGCSD 457
           T E + + QT + S+    K    I     + +  ++        S+I F+  S      
Sbjct: 377 TSEADGQIQTTIQSLPPALKHYYCISKHQHKVDTLRRCVHALDAQSVIAFMNHSRQLKDV 436

Query: 458 VILLEE----------DVNYNLRASSLLEVRQGGSYLIVATDIVARGIDLPETTHIYNFD 517
           V  LE           D+    R++ L + + G   ++V  ++ ARG+D+ E   + N +
Sbjct: 437 VYKLEARGMNSAEMHGDLGKLGRSTVLKKFKNGEIKVLVTNELSARGLDVAECDLVVNLE 496

Query: 518 LPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKFENEL 522
           LP  A++Y HRAGR GR      K  V  +    + F+++K E +L
Sbjct: 497 LPTDAVHYAHRAGRTGR---LGRKGTVVTVCEESQVFIVKKMEKQL 526

[Close]

BLAST of CcUC05G087230 vs. TAIR 10
Match: AT4G00660.2 (RNAhelicase-like 8 )

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-24
Identity = 97/364 (26.65%), Postives = 168/364 (46.15%), Query Frame = 0


Query: 158 QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTK 217
           Q +++P+  +GRD +  A+ G+GKT  + + +   I+   + +QA+I+VPTREL +Q ++
Sbjct: 158 QEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQ 217

Query: 218 VARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQF 277
           V +         E G +  + + +  GG   +        P  +LV T G +  + ++  
Sbjct: 218 VCK---------ELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGV 277

Query: 278 LDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCV 337
             L   +VLV+DE D + S   Q  S++ L++      +RQ +  SA+ P     + D  
Sbjct: 278 CVLKDCSVLVMDEADKLLSQEFQ-PSVEHLISFLP--ESRQILMFSATFPV---TVKDFK 337

Query: 338 QQKWTKNNVVHIHINPIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQS 397
            +  T   V+++ ++ +        + FV  E+ +K     ++    +   +IIF +  +
Sbjct: 338 DRFLTNPYVINL-MDELTLKGITQFYAFV--EERQKIHCLNTLFSKLQINQSIIFCNSVN 397

Query: 398 EKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATD 457
                A KI        ++           +L++  N         + R G    +V TD
Sbjct: 398 RVELLAKKITELGYSCFYIHAK--------MLQDHRNRVFH-----DFRNGACRNLVCTD 457

Query: 458 IVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKF 517
           +  RGID+     + NFD P+ A  YLHR GR+GR  F      V NLIT E+RF L + 
Sbjct: 458 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGR--FGHLGLAV-NLITYEDRFNLYRI 487

Query: 518 ENEL 522
           E EL
Sbjct: 518 EQEL 487

[Close]

BLAST of CcUC05G087230 vs. TAIR 10
Match: AT4G00660.1 (RNAhelicase-like 8 )

HSP 1 Score: 112.5 bits (280), Expect = 1.1e-24
Identity = 97/364 (26.65%), Postives = 168/364 (46.15%), Query Frame = 0


Query: 158 QRQALPVLFSGRDCVLHAQTGSGKTLTYLLLIFSVINAHKSAVQALIVVPTRELGMQVTK 217
           Q +++P+  +GRD +  A+ G+GKT  + + +   I+   + +QA+I+VPTREL +Q ++
Sbjct: 158 QEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQ 217

Query: 218 VARMLAAKPAASEHGLNSYVVMALLDGGLLRRHKTWLKADPPAILVATVGSLCQMVERQF 277
           V +         E G +  + + +  GG   +        P  +LV T G +  + ++  
Sbjct: 218 VCK---------ELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTKKGV 277

Query: 278 LDLGSLNVLVIDEVDFMFSSSKQVSSLKKLLTSYSSFSNRQTVFASASIPQHRHFLHDCV 337
             L   +VLV+DE D + S   Q  S++ L++      +RQ +  SA+ P     + D  
Sbjct: 278 CVLKDCSVLVMDEADKLLSQEFQ-PSVEHLISFLP--ESRQILMFSATFPV---TVKDFK 337

Query: 338 QQKWTKNNVVHIHINPIQPMPSCLLHRFVTCEKNKKHQTFLSILLTDKPQSAIIFASEQS 397
            +  T   V+++ ++ +        + FV  E+ +K     ++    +   +IIF +  +
Sbjct: 338 DRFLTNPYVINL-MDELTLKGITQFYAFV--EERQKIHCLNTLFSKLQINQSIIFCNSVN 397

Query: 398 EKSKKAGKIPPTTSMIDFLKTSYGGCSDVILLEEDVNYNLRASSLLEVRQGGSYLIVATD 457
                A KI        ++           +L++  N         + R G    +V TD
Sbjct: 398 RVELLAKKITELGYSCFYIHAK--------MLQDHRNRVFH-----DFRNGACRNLVCTD 457

Query: 458 IVARGIDLPETTHIYNFDLPRCAINYLHRAGRAGRKPFSEEKCVVTNLITSEERFVLQKF 517
           +  RGID+     + NFD P+ A  YLHR GR+GR  F      V NLIT E+RF L + 
Sbjct: 458 LFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGR--FGHLGLAV-NLITYEDRFNLYRI 487

Query: 518 ENEL 522
           E EL
Sbjct: 518 EQEL 487

The following BLAST results are available for this feature:

BLAST of CcUC05G087230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877244.1	1.7e-242	91.33	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Benincasa hisp...	[more]
XP_011650984.1	2.0e-238	90.49	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X4 [Cucumis sativu...	[more]
XP_031738178.1	1.4e-236	89.54	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X3 [Cucumis sativu...	[more]
XP_008438702.1	5.4e-236	89.64	PREDICTED: DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 [Cuc...	[more]
XP_031738177.1	1.5e-233	84.92	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X2 [Cucumis sativu...	[more]

BLAST of CcUC05G087230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3E9C3	4.7e-158	64.38	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Arabidopsis thaliana OX...	[more]
Q0JFN7	4.0e-141	62.28	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza sativa subsp. jap...	[more]
Q81DF9	1.6e-28	29.17	DEAD-box ATP-dependent RNA helicase CshE OS=Bacillus cereus (strain ATCC 14579 /...	[more]
Q4R8K5	2.0e-28	28.24	Eukaryotic initiation factor 4A-I OS=Macaca fascicularis OX=9541 GN=EIF4A1 PE=2 ...	[more]
Q3SZ54	2.7e-28	28.24	Eukaryotic initiation factor 4A-I OS=Bos taurus OX=9913 GN=EIF4A1 PE=2 SV=1	[more]

BLAST of CcUC05G087230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5M9	9.5e-239	90.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G149880 PE=4 SV=1	[more]
A0A1S3AX19	2.6e-236	89.64	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Cucumis melo...	[more]
A0A6J1C9C7	7.8e-225	84.78	DEAD-box ATP-dependent RNA helicase 58, chloroplastic isoform X1 OS=Momordica ch...	[more]
A0A6J1EZV7	2.7e-217	73.88	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita moschata OX=3...	[more]
A0A6J1I860	4.8e-214	74.25	DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Cucurbita maxima OX=366...	[more]

BLAST of CcUC05G087230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G19210.2	3.3e-159	64.38	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G19210.1	2.8e-126	68.24	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT1G12770.1	3.7e-25	27.09	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G00660.2	1.1e-24	26.65	RNAhelicase-like 8	[more]
AT4G00660.1	1.1e-24	26.65	RNAhelicase-like 8	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001650	Helicase, C-terminal	SMART	SM00490	helicmild6	coord: 414..494 e-value: 5.7E-10 score: 49.1
IPR001650	Helicase, C-terminal	PFAM	PF00271	Helicase_C	coord: 373..492 e-value: 4.3E-15 score: 56.0
IPR001650	Helicase, C-terminal	PROSITE	PS51194	HELICASE_CTER	coord: 373..530 score: 12.769577
IPR014001	Helicase superfamily 1/2, ATP-binding domain	SMART	SM00487	ultradead3	coord: 150..365 e-value: 1.2E-29 score: 114.4
IPR014001	Helicase superfamily 1/2, ATP-binding domain	PROSITE	PS51192	HELICASE_ATP_BIND_1	coord: 162..344 score: 20.323715
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 359..527 e-value: 4.8E-24 score: 86.5
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 111..343 e-value: 1.2E-40 score: 141.3
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 163..507
IPR011545	DEAD/DEAH box helicase domain	PFAM	PF00270	DEAD	coord: 157..328 e-value: 1.1E-27 score: 96.9
None	No IPR available	PANTHER	PTHR47958:SF95	DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC	coord: 158..529
None	No IPR available	PANTHER	PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	coord: 158..529
None	No IPR available	CDD	cd18787	SF2_C_DEAD	coord: 361..506 e-value: 1.5336E-23 score: 94.1112
None	No IPR available	CDD	cd00268	DEADc	coord: 158..350 e-value: 1.65458E-47 score: 161.841

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G087230.1	CcUC05G087230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003724	RNA helicase activity
molecular_function	GO:0003676	nucleic acid binding