CcUC05G084570 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G084570
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptiontranslation machinery-associated protein 7
LocationCicolChr05: 2988883 .. 2990298 (-)
RNA-Seq ExpressionCcUC05G084570
SyntenyCcUC05G084570
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGTCCAAGCAAGGTACGATCGTTCTATTCAGCGTTCTTTTCCGATTTCACCTTCGTTACGGTTGTATCATCGATTAATAGAGAAAGTCACTAAAATTATTCCCCAAAACCGAATCTAAAATTATTAACCCCCCGTTTTACCGATGTAAATCATGATATTGGGAATCGATTTTGTTGTATGTCTTTATAGGAGGGAAAGCAAAGCCTCTGAAGCAACCGAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGCAAATCTATTTTCTTCCTGGTTTTCTTTATTTTGGATACAATTTTTTGGTATCGAAGAATTTCGATCTCCCTTGAAGGCTGTTAATGATTTCGTGAAGTTTCAAATTGGTGATTGTGGCTTAGCCCACTTTCAGGGTATTAGCAAAATTATATTTAAGTAACGTGTACCTGATTTTTGGGTTTGATCTAGCTTTTGCCTTTCTTCTTATTATTATTGTTGAAAAAAATTGAACTGCAAGCATAATTATTGTCCATTCCATTCACCGTGGAGGAAAGTTCCAGCTAAATTATTAAAGGATGCTCCTCGCCTGAAATCACTGTCTATTCCATTCATTGTCTATTTTTATTTAATGGTTGCATGATGAAGGGAAGATGGAAGGAACTGTAACTGCCGCTACCGTAATTCGTTGTGGAGAAATTCTTTTTTGTAGTCAGCTAAGTAACATGGCGAGGTATTACTTTCAGAACTAGAATTTGAATTTTTCTGGGTTTTCTCAACAGGTTGATCTGGCCAATATTCAAAAGAAGAAGGAGGAGGAGAAGGTTTGAACTTGAACTTTTAAGTTGAAAACAGTCGGTTTAGTTTAGATGCTTGGTTCTTGAATGAATACAAACTGTTCGTGTTGGTGCATGTCCTTTTTTAACTTTTGTTAATTTTGGCCTTGGTTCCTTCATTTTCATCTCATCTTTTAATGGAAATTTTAGTATGACAATTCACTCACTGAATTTCTTAAATACAACCACAAATTTGTATTAAAGGGTTTTCATAGTGTATTAACTTTAAGTTTTGCAATAAGAACCAAAATGATCAGTTCATGGACCAAAATGAAGATTCTCAAAAGATAAAGAACTTAAACAAACGTTTTTATAGTACAATAGCAAGCCAAACTAAAGTCGAAAGTTACATAAGTAGTATTTAAACATAAACCGAAACTGTCACAAAACTTTTTCTTCTGGTCCATAAGTGTGGTTACTGCTACTGAAGTATAATTTGGAGATGTTTGATGATATATATATACAGGCGATCAGGGAGCTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGCTTCCCACGCAAATACATGGAGGTAG

mRNA sequence

ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCGAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGCAAATCTATTTTCTTCCTGGCGATCAGGGAGCTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGCTTCCCACGCAAATACATGGAGGTAG

Coding sequence (CDS)

ATGTCGTCCAAGCAAGGAGGGAAAGCAAAGCCTCTGAAGCAACCGAAGGTTGATAAGAAAGAGTACGACGAGGTATGCTTTCAATTTATTATTTTATGGATCCATGCCGCAAATCTATTTTCTTCCTGGCGATCAGGGAGCTTAGAGCAAAGGCCCAACAGAAGGGGACCTTTGGAGGTGCTGGGCTCAAGAAAAGTGGGAAGAAATGAGGCTTCCCACGCAAATACATGGAGGTAG

Protein sequence

MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRSGSLEQRPNRRGPLEVLGSRKVGRNEASHANTWR
Homology
[Close]
BLAST of CcUC05G084570 vs. NCBI nr
Match: KAG4382676.1 (hypothetical protein GLYMA_14G136351v4 [Glycine max])

HSP 1 Score: 61.6 bits (148), Expect = 3.4e-06
Identity = 36/72 (50.00%), Postives = 44/72 (61.11%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANLFSSWRSGSLEQRPNRRGPLEV 60
          MS+KQGGKAKPLK+PK DKK+YDEV    I      A          L+ +  ++G  EV
Sbjct: 1  MSTKQGGKAKPLKKPKSDKKDYDEVDMANIQKKKEEAKALK-----ELKAKAQQKGSFEV 60

Query: 61 LGSRKVGRNEAS 73
          LGSRKV RN+ S
Sbjct: 61 LGSRKVERNKGS 67

[Close]
BLAST of CcUC05G084570 vs. NCBI nr
Match: KAG8656340.1 (hypothetical protein MANES_04G124600v8 [Manihot esculenta])

HSP 1 Score: 53.5 bits (127), Expect = 9.3e-04
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEVCFQFIILWIHAANL 40
          MSSKQGGKAKPLKQPK DKKEYDE     ++L    AN+
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDEYYEFILVLQTDMANI 39

[Close]
BLAST of CcUC05G084570 vs. ExPASy TrEMBL
Match: A0A6J1FTB5 (translation machinery-associated protein 7-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448285 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 25

[Close]
BLAST of CcUC05G084570 vs. ExPASy TrEMBL
Match: A0A6J1JGF3 (translation machinery-associated protein 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111484156 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 25

[Close]
BLAST of CcUC05G084570 vs. ExPASy TrEMBL
Match: A0A6J1CWS4 (translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC111015118 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 35 MSSKQGGKAKPLKQPKVDKKEYDEV 59

[Close]
BLAST of CcUC05G084570 vs. ExPASy TrEMBL
Match: A0A2P5ELN0 (Translation machinery associated TMA OS=Trema orientale OX=63057 GN=TorRG33x02_177400 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.9e-04
Identity = 25/25 (100.00%), Postives = 25/25 (100.00%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 26
          MSSKQGGKAKPLKQPKVDKKEYDEV
Sbjct: 1  MSSKQGGKAKPLKQPKVDKKEYDEV 25

[Close]
BLAST of CcUC05G084570 vs. TAIR 10
Match: AT1G15270.1 (Translation machinery associated TMA7 )

HSP 1 Score: 50.1 bits (118), Expect = 9.6e-07
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDE 25
          MSSKQGGKAKPLKQPK DKKEYDE
Sbjct: 1  MSSKQGGKAKPLKQPKADKKEYDE 24

[Close]
BLAST of CcUC05G084570 vs. TAIR 10
Match: AT3G16040.1 (Translation machinery associated TMA7 )

HSP 1 Score: 44.7 bits (104), Expect = 4.0e-05
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0 

Query: 1  MSSKQGGKAKPLKQPKVDKKEYDE 25
          MSSKQGGK KPLKQPK  KKEYDE
Sbjct: 1  MSSKQGGKLKPLKQPKSGKKEYDE 24

The following BLAST results are available for this feature:
BLAST of CcUC05G084570 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG4382676.13.4e-0650.00hypothetical protein GLYMA_14G136351v4 [Glycine max][more]
KAG8656340.19.3e-0466.67hypothetical protein MANES_04G124600v8 [Manihot esculenta][more]
BLAST of CcUC05G084570 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G084570 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FTB55.9e-04100.00translation machinery-associated protein 7-like isoform X2 OS=Cucurbita moschata... [more]
A0A6J1JGF35.9e-04100.00translation machinery-associated protein 7-like isoform X2 OS=Cucurbita maxima O... [more]
A0A6J1CWS45.9e-04100.00translation machinery-associated protein 7 OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A2P5ELN05.9e-04100.00Translation machinery associated TMA OS=Trema orientale OX=63057 GN=TorRG33x02_1... [more]
BLAST of CcUC05G084570 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G15270.19.6e-0795.83Translation machinery associated TMA7 [more]
AT3G16040.14.0e-0587.50Translation machinery associated TMA7 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015157Translation machinery associated TMA7PFAMPF09072TMA7coord: 3..24
e-value: 2.5E-7
score: 31.5
IPR015157Translation machinery associated TMA7PANTHERPTHR28632TRANSLATION MACHINERY-ASSOCIATED PROTEIN 7coord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..78
NoneNo IPR availablePANTHERPTHR28632:SF8BNAA06G09940D PROTEINcoord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G084570.1CcUC05G084570.1mRNA