CcUC05G084350 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC05G084350
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Descriptioncytochrome c oxidase-assembly factor COX23, mitochondrial
LocationCicolChr05: 2801668 .. 2804857 (-)
RNA-Seq ExpressionCcUC05G084350
SyntenyCcUC05G084350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAGGCAGCCATTTTAACCGACCTCTATCTGCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCGCTTCTAGGGATCCGGCTTCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTATAGCGCTTCCCTGAAATGTAGGTTCACTCTCATACTCCCTCTCCGTTATTATCAATTTTTTTCGTTTTTCTTTGATTCTCCGCCAAATATTTACGTATCTGGGCTACTATTATCTCACCATTTGGATTTCTTCAACACTGGTTCACTTGAGAATGATTGCGTGCTGTGCATCAATTTTTTCGGTTTGTGTTCTGGATGGCTAAGCTCTCGAATTTGTTGTTGGCGGTGATCGTGCAAACTCTAATTTTCATGGCGATTCTCTATGCTCTATTAGTTGAATAATTGGTTAGCCTGTTTAATTTCCCTTTCTAGTGATACCATACAATTTCCATCCACTTTAGGTCAATCGATGAAGAGTAAGCAAACTTAATTGTGATATTGATCGGATGATAATCTTAAAACCAAAATAGTGTTTACCAGGGTATTACTTGATAGAACGCTCGTGATAGTCCTTAGAGTGGCTGTGTTTTGAGTTCACTTACTGTTCTAACTAACTATTGCAGTAGTGGATGAACTTTTACTCGGATTTTGAAGCCAAGATATCTTAATCCTCATTGCCTTAGGGCCAAGTTCTTATTTAAAATGCCAAAGTAGGAATTACTTAGTTGGATGGTTCTTTTGCTCCAGAACTTATTTAGTTGTGATTCAACATCAGCAACCCCATCCAATTTCATTATTTGGCTAATTCTTAGAGCTGTATTTATAAGAGAGTTTCAACTTTCTGGAGGTCCCTCTATATATTTGTTTTGATTTAGGTTTACGGATAACACCACATATAGACAGAATAATTTTTAAAAAGACGTTTAGATGTTTAATGCGGAAGTCTCGAGCTGCAACATAAGGCAAGATCGTTTATGGAAAGCATGCATAACTGGTAATGGCTGATAAGTCAGGTGTAAAGTGAAAATTTAATTTGAATTTTTAAATGAGTACTACCTGATAAAGTGTAGCTTAATCTTTGGTGTGTCATAAATCATCCAATGAGAAGTTTGGTGTTTAAAATACTAATTTTGTAGATTTTGAATTTTATTTTTATGTCAGAGAAAATTTTGAACTTATCAGAGAATATCTCCTTCCCAAATGTTATAGGTCTTGAAGAACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTTTTCTAACTTGTTCTGTTTTTTGCTCTTTGGGGTCTGCTCATTTGCCTGTGACGTTAATGGATCAAGGAAATTTAAATAATATCCTCATTTCATTTGGACATAATTGGATAACCAGTGAGTCATTGAGTTAGTTATGTGTTCAATCTTAAAGGAATGTTAAAATATGATTTTGGTCCTCACAAAAAGTTCTACTTTGATCTTGCATGTGTTAGTAATTTCTATCTTATATATTCTATCCTAGTTAAAATCTGTAACGGAGAAGTGACTGGACTAATTCTTTTATATCAGATTTATATGCAAGTGATGTATTACATGTCTATGTTGTCTCTTAGAATACCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTCTCTCTCTCTCTCTCTCTTTCTTTTTTTTGTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGATTCAGATACTATGGAAACTTTAAAACCCTCTGCCTATGCATTCCCATAACATTTATAAATCCTATCTGGGTTTAGTAAATATAGAAATGTTCTATAGGCTGTCATTTACTTCCTTAGTTGGTGTAGTAGAGTAGCATCATGTACCAATTCTTGATCAGACATTGCCTCTGTTTATGAAGTTTCTAACTCAGAATGAGATCTGTCACCTTTACAGCGGGAAGCTCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAGATTATCTTCAGGCATGTTTATTGATGTTGAAGTATGTAAGTTTAAATGCAATCCACACATTTATTAACGTTCTTGTAGCAGTAGATTTTTCTGGTGCTCATTTAGACAATGACTCAGCGAGTATTGCCCTCTTACTATCATTTGTCTATTAATAAAAGATGCATACCATCTTTATGTTCAATCATCTCCATGTTGATCAATTTTCATTCTTGAAGTGTAGGAATCTGTAAACCTTGATCCTCCATTTGATCTAACTATTGCAGGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGGTATTTATACCTTTTTAAAGAGGGCATAAGTTAAAACCTCTGATATTATATGATAGTTCTATGAAAAAGATCGGCCGTCTATTTGAGTATTTCTCTTTTGAAGAATTTTTTTAGTTCAACATGTAGTATGAGAATTCGATCTTCTTACCTCTAAGTTGAAAATACACCGTCTTATGTGGTTTGATATTTTTTAAAAAAAATGTTTTAAATTCAAATCTCCCAACCAATCAATGTATGAAGAAATGTCTGATATTGATTTGAGTCTTACTTGATAGGTTATTGGTTATTATGAAGTTCCTAGTGAAGATGAATTTGTTGTATATATATATTAATTCAATACGTGGAAATAAGAACTCAAACCACCCACTTTCTGCTCAATGTTGATTGTATGCCTTGAAGTTATGTTCACATTTGGTTAATTCTATGAAATGTCTACCTACACTCAAATGACGATCCTTGACTTAAAAATTGCTCTCTATATGATTACTTGCGCAAACTATTTTGCTTTGACAGTTTCAGTTACGTCATTTTCCAAACCATCATGGATTGATCTAGTGGTAAAAAAGGAGACACAGTTTCAATAAATGGTTAAGGTCATGGGTTCGTAGTGCTCGATTAAGGGTTGTCAATCAACATGATTTAAATAATTTATTGGAAAAATCAATTCTTGGATCAGTCGGCCAAGAGGAAGCGAGATGAATCATTCTTAGATCATTTTAGTCCCCTTGGGATTTATTAGTCATACCTAGCTGTGTGCAATTGTCTTGGTGATAGATTTCTACTTCATTATTGACGGACTTTGGCCTGGCT

mRNA sequence

CAGGCAGCCATTTTAACCGACCTCTATCTGCCACCGAGACAGAGTGAGCTTTTCCGCCATGGCTTCCGCTTCTAGGGATCCGGCTTCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTATAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTTTTCTAACTTGTTCTGTTTTTTGCTCTTTGGGGTCTGCTCATTTGCCTGTGACGTTAATGGATCAAGGAAATTTAAATAATATCCTCATTTCATTTGGACATAATTGGATAACCACGGGAAGCTCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAGATTATCTTCAGGCATGTTTATTGATGTTGAAGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGGTATTTATACCTTTTTAAAGAGGGCATAAGTTAAAACCTCTGATATTATATGATAGTTCTATGAAAAAGATCGGCCGTCTATTTGAGTATTTCTCTTTTGAAGAATTTTTTTAGTTCAACATGTAGTATGAGAATTCGATCTTCTTACCTCTAAGTTGAAAATACACCGTCTTATGTGGTTTGATATTTTTTAAAAAAAATGTTTTAAATTCAAATCTCCCAACCAATCAATGTATGAAGAAATGTCTGATATTGATTTGAGTCTTACTTGATAGGTTATTGGTTATTATGAAGTTCCTAGTGAAGATGAATTTGTTGTATATATATATTAATTCAATACGTGGAAATAAGAACTCAAACCACCCACTTTCTGCTCAATGTTGATTGTATGCCTTGAAGTTATGTTCACATTTGGTTAATTCTATGAAATGTCTACCTACACTCAAATGACGATCCTTGACTTAAAAATTGCTCTCTATATGATTACTTGCGCAAACTATTTTGCTTTGACAGTTTCAGTTACGTCATTTTCCAAACCATCATGGATTGATCTAGTGGTAAAAAAGGAGACACAGTTTCAATAAATGGTTAAGGTCATGGGTTCGTAGTGCTCGATTAAGGGTTGTCAATCAACATGATTTAAATAATTTATTGGAAAAATCAATTCTTGGATCAGTCGGCCAAGAGGAAGCGAGATGAATCATTCTTAGATCATTTTAGTCCCCTTGGGATTTATTAGTCATACCTAGCTGTGTGCAATTGTCTTGGTGATAGATTTCTACTTCATTATTGACGGACTTTGGCCTGGCT

Coding sequence (CDS)

ATGGCTTCCGCTTCTAGGGATCCGGCTTCGCCGTATGCCACTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTATAGCGCTTCCCTGAAATGTCTTGAAGAACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTTTTCTAACTTGTTCTGTTTTTTGCTCTTTGGGGTCTGCTCATTTGCCTGTGACGTTAATGGATCAAGGAAATTTAAATAATATCCTCATTTCATTTGGACATAATTGGATAACCACGGGAAGCTCGATTGGAACGCAACAAGAAACGGTCTTTCTTCTCATGAGATTATCTTCAGGCATGTTTATTGATGTTGAAGCTATAATCACGCTTAACCCTAGGGCTTTAAGTGGTCAAGAATTTACGACAGCAGCTGAGGTATTTATACCTTTTTAA

Protein sequence

MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEVFSFLTCSVFCSLGSAHLPVTLMDQGNLNNILISFGHNWITTGSSIGTQQETVFLLMRLSSGMFIDVEAIITLNPRALSGQEFTTAAEVFIPF
Homology
[Close]
BLAST of CcUC05G084350 vs. NCBI nr
Match: XP_038906947.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida])

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 53/58 (91.38%), Postives = 56/58 (96.55%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDPA PYA+AARISDSPCYPQYSASLKCLEEH+SEKSKC+EHFDVYKECKKKE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHNSEKSKCREHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. NCBI nr
Match: XP_022147041.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-19
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS +RD A PYA+AARISDSPCYPQYSASLKCLEEHSSEK+KCQEHFDVYKECKKKE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. NCBI nr
Match: KAA0049122.1 (cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.1 cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 1.1e-19
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDPA PYA+AARISDSPCYPQYSASLKCLE +SSEKSKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >KAG6582500.1 hypothetical protein SDJN03_22502, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018885.1 hypothetical protein SDJN02_20758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-19
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP+ PY +AARISDSPC+PQYSASLKCLEEHSSE+SKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. NCBI nr
Match: XP_004133972.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_009870 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.8e-19
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP  PY +AARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. ExPASy TrEMBL
Match: A0A5A7U004 (Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003050 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 53/58 (91.38%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDPA PYA+AARISDSPCYPQYSASLKCLE +SSEKSKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. ExPASy TrEMBL
Match: A0A6J1D157 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016071 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 5.1e-20
Identity = 52/58 (89.66%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS +RD A PYA+AARISDSPCYPQYSASLKCLEEHSSEK+KCQEHFDVYKECKKKE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. ExPASy TrEMBL
Match: A0A6J1E9H8 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432060 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 6.7e-20
Identity = 51/58 (87.93%), Postives = 55/58 (94.83%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP+ PY +AARISDSPC+PQYSASLKCLEEHSSE+SKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. ExPASy TrEMBL
Match: A0A0A0L4K5 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 8.7e-20
Identity = 52/58 (89.66%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP  PY +AARISDSPCYPQYSASLKCLE HSSEKSKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. ExPASy TrEMBL
Match: A0A6J1ITM4 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479820 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.6e-18
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 1  MASASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          MAS SRDP  PY +AARISDSPC+ QYSASLKCLEEHSSE+SKCQEHFDVYKECKKKE
Sbjct: 1  MASTSRDPPPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKE 58

[Close]
BLAST of CcUC05G084350 vs. TAIR 10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-17
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 0 

Query: 4  ASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKEV 60
          +++  A+ Y +AARISDSPCY QYSASLKCLEE  S+KSKCQ+HFDVYKECKKKEV
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKEV 57

[Close]
BLAST of CcUC05G084350 vs. TAIR 10
Match: AT1G02160.1 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 85.1 bits (209), Expect = 5.2e-17
Identity = 41/55 (74.55%), Postives = 48/55 (87.27%), Query Frame = 0 

Query: 4  ASRDPASPYATAARISDSPCYPQYSASLKCLEEHSSEKSKCQEHFDVYKECKKKE 59
          +++  A+ Y +AARISDSPCY QYSASLKCLEE  S+KSKCQ+HFDVYKECKKKE
Sbjct: 2  STKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

The following BLAST results are available for this feature:
BLAST of CcUC05G084350 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038906947.11.6e-2091.38cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida][more]
XP_022147041.11.1e-1989.66cytochrome c oxidase-assembly factor COX23, mitochondrial [Momordica charantia][more]
KAA0049122.11.1e-1991.38cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.... [more]
XP_022924627.11.4e-1987.93cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >... [more]
XP_004133972.11.8e-1989.66cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN... [more]
BLAST of CcUC05G084350 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC05G084350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U0045.1e-2091.38Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1D1575.1e-2089.66cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia... [more]
A0A6J1E9H86.7e-2087.93cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata ... [more]
A0A0A0L4K58.7e-2089.66CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 S... [more]
A0A6J1ITM41.6e-1886.21cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX... [more]
BLAST of CcUC05G084350 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G02160.21.8e-1775.00Cox19 family protein (CHCH motif) [more]
AT1G02160.15.2e-1774.55Cox19 family protein (CHCH motif) [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010625CHCHPFAMPF06747CHCHcoord: 23..57
e-value: 4.8E-8
score: 32.9
NoneNo IPR availablePANTHERPTHR48150CYTOCHROME C OXIDASE-ASSEMBLY FACTOR COX23, MITOCHONDRIALcoord: 3..59
NoneNo IPR availablePROSITEPS51808CHCHcoord: 20..62
score: 15.719831
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 21..57

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC05G084350.1CcUC05G084350.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane