CcUC05G084080 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC05G084080
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L18-like
Location	CicolChr05: 2604731 .. 2606573 (+)
RNA-Seq Expression	CcUC05G084080
Synteny	CcUC05G084080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAAGCAAGAGGAGCAAGATTCATACATACCTGGAGGGAAATTGAAGCGAATCCTGAAGAGGAAAGTGAAAAATGTTAAGCACATCAATTCCCGAGTCGTCGTCATCAGCTTCTGCTTTTCGACCCTCCCCCACACTATTTTCACATTTCGTTGGGAAACCCAATTCTTCTGTTTCATGCCCATCTTCTTTTTCCAACCTCTCCATCTCCTTCCACGCCAATAAACCGCCTTCTCTTTCAACTCACAATACAGTACGTCCTCTCTTTTACTCCATTTTCAGCCATGCTGCATTTCTCTGTCTTCCTTCGAAAACCAACAAAAAAACAAATAAAAAAATATATCATTTTTTCCAAATTAATCGCGGATTCTAGTTCCATCGCGGTGCTCGTGTGGGAAATCTGTATAGTTGTTTTGTCTTTGTTTTGGCGAGACTATGAAGTTGAATACAAAGGCATTATTCGAATCCCTTGACTGTTATGAGGGATATTTATGCGGATTATGCAGCCATGGTGTTCGACGAAATGTCTAGTGGTGAAGGAAACTGACTAATCTGCGTTCTAACCTTAATAATATCACCACTTAAGTTTTGTGGATTCTTTAGCATGATCGGTAACTTTATCATAAAAGTAGATATTTCCACACATATCAATGTTTGATACCTCGTTCTGTAGGTCGAAGTCCCATTTAGAAGTTTAGATCAGACTGAGATGGCAATTAGGGGAAGGTATGCAACTAAAACCTCACGTTGGCTAAGAAATCGTGGGTATATAAGTGATGACAATCTCTTCATTTACACTAGGTCTTTTAGGTAATTGAGAAATAACTAAAAGCAAAACCACGAAGACATCTATACCAAATGATGGGCAACATCATATCATTGTGGAGATGTTGGAAAGGTCTATGGTCCAAAACATTAAAGTACGATCCAAATTTAGTTGCATCGATAGAATCATTGGTTATCGAAGAATGAAATAGTCAGCTTCAATGACATGTTCCTGTGGGAGATCTATAGTTGAGCATTGGATTCAGTACTCCAAAGATGAGTTGGTTTGATTGGGATTATTTAATTGAGGTTAATTACTCCCATTGATATATATGGGGCCTTTTGGGTGAAACCAAGGAAGATAATATCATTCAAATCGCCCGTAGAGATGTTGAAGAGGTAAATCCTCCCCACATCTTCAAATGAAAATGAAAATTCAGATACTTAAGCTTAAAACCTAGAGGTATAAGACTATAATAAAACGTAAACCCAAAATATGACTGATTCCACGTTTTGCAATTCTTAAACTCAAAACTTTAATGATGGAAGAAAATAGTTTATGGAGCTTACGAGTTATTTTTATTTTGTAGAAGCCTTTCATTCAAGCAGCCTGGACGCGAAGATCTCGAGGAGAAGCTGCAAAAATAGCTAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTAGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTCGTTTCGGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCAACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGTACTGTCTTATGACCCTCCAAACATGGAAAGAATTCAAGGCAAAATTGGGATTGTAATTGATACTATTAAGGAGAATGGTATTCTATTCGTCTAGGCTTTGTATCCATCTTTCCCACGCAAATTGCTCTTTTCCTTCTACCATACTAATATAATACATTTGGGTCTCAAACTGCTCTTTGTGTGCG

mRNA sequence

CAGAAAGCAAGAGGAGCAAGATTCATACATACCTGGAGGGAAATTGAAGCGAATCCTGAAGAGGAAAGTGAAAAATGTTAAGCACATCAATTCCCGAGTCGTCGTCATCAGCTTCTGCTTTTCGACCCTCCCCCACACTATTTTCACATTTCGTTGGGAAACCCAATTCTTCTGTTTCATGCCCATCTTCTTTTTCCAACCTCTCCATCTCCTTCCACGCCAATAAACCGCCTTCTCTTTCAACTCACAATACAAAGCCTTTCATTCAAGCAGCCTGGACGCGAAGATCTCGAGGAGAAGCTGCAAAAATAGCTAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTAGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTCGTTTCGGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCAACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGTACTGTCTTATGACCCTCCAAACATGGAAAGAATTCAAGGCAAAATTGGGATTGTAATTGATACTATTAAGGAGAATGGTATTCTATTCGTCTAGGCTTTGTATCCATCTTTCCCACGCAAATTGCTCTTTTCCTTCTACCATACTAATATAATACATTTGGGTCTCAAACTGCTCTTTGTGTGCG

Coding sequence (CDS)

ATGTTAAGCACATCAATTCCCGAGTCGTCGTCATCAGCTTCTGCTTTTCGACCCTCCCCCACACTATTTTCACATTTCGTTGGGAAACCCAATTCTTCTGTTTCATGCCCATCTTCTTTTTCCAACCTCTCCATCTCCTTCCACGCCAATAAACCGCCTTCTCTTTCAACTCACAATACAAAGCCTTTCATTCAAGCAGCCTGGACGCGAAGATCTCGAGGAGAAGCTGCAAAAATAGCTAACAGGAAATCATGGAAGCAAAGAACAGATATGTACATGAGACCATTTGTTTTAGATGTTTACTTTTCAAGGAGGTTCATCCATGCCAAAGTGATGCATCGAGGAACAAGCAAGGTCGTTTCGGCAGCAAGCACTAATTGCAAGGATTTAAGGTATTCATTACCATCACCAACTGATGACAATGCCTGTAGGATTATTGGGAACCTAATTGCTGAGAGATGTAAAGAAGCTGATGTGTTTGTACTGTCTTATGACCCTCCAAACATGGAAAGAATTCAAGGCAAAATTGGGATTGTAATTGATACTATTAAGGAGAATGGTATTCTATTCGTCTAG

Protein sequence

MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNTKPFIQAAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGILFV

Homology

[Close]

BLAST of CcUC05G084080 vs. NCBI nr
Match: XP_038905466.1 (50S ribosomal protein L18-like [Benincasa hispida])

HSP 1 Score: 315.5 bits (807), Expect = 3.2e-82
Identity = 165/191 (86.39%), Postives = 175/191 (91.62%), Query Frame = 0


Query: 1   MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 60
           MLSTSIPESSSSASAFRP+ TL S F+ KP +S+S PSSFS LSISF A K PSLSTH+ 
Sbjct: 1   MLSTSIPESSSSASAFRPTATLLSGFIQKP-TSLSWPSSFSKLSISFVAIKAPSLSTHHR 60

Query: 61  KPFIQAAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 120
           K  IQ+AWTRRSRGEAAK  NRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV
Sbjct: 61  KSLIQSAWTRRSRGEAAKRGNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 120

Query: 121 SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVI 180
           SAASTNCKDLRYSL SPTD+NACRIIGNLIAERCKEADVFV+SYDPP+MERIQGKIGIVI
Sbjct: 121 SAASTNCKDLRYSLLSPTDENACRIIGNLIAERCKEADVFVMSYDPPDMERIQGKIGIVI 180

Query: 181 DTIKENGILFV 192
           DTIK+NGILFV
Sbjct: 181 DTIKKNGILFV 190

[Close]

BLAST of CcUC05G084080 vs. NCBI nr
Match: KAA0049096.1 (50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S ribosomal protein L18-like [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 5.9e-76
Identity = 158/192 (82.29%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 1   MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 60
           +LSTSIPESSSSA       TL S F+ KP SS S  SSFS LSISF A K PSLSTHNT
Sbjct: 2   LLSTSIPESSSSA-------TLLSSFLQKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 61

Query: 61  KPFIQ-AAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 120
           K  I+ AAWTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 62  KSLIKAAAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121

Query: 121 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIV 180
           VSAASTNCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SYDPP+MERIQ K+GIV
Sbjct: 122 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181

Query: 181 IDTIKENGILFV 192
           IDTIKENGI+FV
Sbjct: 182 IDTIKENGIIFV 185

[Close]

BLAST of CcUC05G084080 vs. NCBI nr
Match: XP_011650830.1 (uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical protein Csa_010165 [Cucumis sativus])

HSP 1 Score: 294.7 bits (753), Expect = 5.9e-76
Identity = 159/192 (82.81%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 60
           +LSTSIPESSSSA+      TL S F+ KP SS S  SSFS LSISF A K PSLSTHNT
Sbjct: 2   LLSTSIPESSSSAA------TLVSSFLHKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 61

Query: 61  KPFIQ-AAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 120
           K  I+ AAWTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 62  KFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121

Query: 121 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIV 180
           VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF +SYDPP+MERIQ K+GIV
Sbjct: 122 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181

Query: 181 IDTIKENGILFV 192
           IDTIKENGI+FV
Sbjct: 182 IDTIKENGIIFV 186

[Close]

BLAST of CcUC05G084080 vs. NCBI nr
Match: XP_008438261.1 (PREDICTED: 50S ribosomal protein L18-like [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 7.7e-76
Identity = 158/192 (82.29%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 1   MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 60
           +LSTSIPESSSSA       TL S F+ KP SS S  SSFS LSISF A K PSLSTHNT
Sbjct: 2   LLSTSIPESSSSA-------TLLSSFLQKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 61

Query: 61  KPFIQ-AAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 120
           K  I+ AAWTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 62  KSLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121

Query: 121 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIV 180
           VSAASTNCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SYDPP+MERIQ K+GIV
Sbjct: 122 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181

Query: 181 IDTIKENGILFV 192
           IDTIKENGI+FV
Sbjct: 182 IDTIKENGIIFV 185

[Close]

BLAST of CcUC05G084080 vs. NCBI nr
Match: XP_022937699.1 (uncharacterized protein LOC111444022 [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 9.4e-74
Identity = 153/191 (80.10%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 2   LSTSIPESSS-SASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 61
           LS+SIP SSS SAS   PS TL S F+ KP +S+S PSSFS LSI   A KPPS STHN 
Sbjct: 4   LSSSIPGSSSWSASVHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63

Query: 62  KPFIQAAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 121
              IQAAWTRRSRGE +K  NRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV
Sbjct: 64  NSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 123

Query: 122 SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVI 181
           SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SYDPP   +I+GKI IVI
Sbjct: 124 SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVI 183

Query: 182 DTIKENGILFV 192
           D IK+NGILFV
Sbjct: 184 DAIKDNGILFV 191

[Close]

BLAST of CcUC05G084080 vs. ExPASy Swiss-Prot
Match: Q5P316 (50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rplR PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.5e-08
Identity = 39/121 (32.23%), Postives = 65/121 (53.72%), Query Frame = 0


Query: 70  RRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 129
           RR+R   AKIA  KS +           L V+ +   I+A+V+    S+V++AAST   D
Sbjct: 9   RRARKTRAKIAELKSVR-----------LTVFRTNSHIYAQVIDGSGSRVLAAASTVEAD 68

Query: 130 LRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGIL 189
           +R  LP+  +  A +++G LIAER K A V  +++D    +   G++  + +  +E G+ 
Sbjct: 69  VRSQLPNGGNKQAAQVVGKLIAERAKAAGVEAVAFDRAGFQ-YHGRVKALAEAAREGGLK 117

Query: 190 F 191
           F
Sbjct: 129 F 117

[Close]

BLAST of CcUC05G084080 vs. ExPASy Swiss-Prot
Match: B5ZYV1 (50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) OX=395492 GN=rplR PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.0e-06
Identity = 43/120 (35.83%), Postives = 64/120 (53.33%), Query Frame = 0


Query: 72  SRGEA-AKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDL 131
           SR EA A+ ANR     ++    RP  L V+ S + I+A+V+     K ++AAST  KDL
Sbjct: 3   SRKEALARRANRVRRHLKSVANGRP-RLSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDL 62

Query: 132 RYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGILF 191
           R SL +  D  A  ++G L+AER  +A V  + +D        G+I  + D  +E G+ F
Sbjct: 63  RGSLKTGADTAAAALVGKLVAERASKAGVTDVVFD-RGAFIYHGRIKALADAAREGGLTF 120

[Close]

BLAST of CcUC05G084080 vs. ExPASy Swiss-Prot
Match: A9BG02 (50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=403833 GN=rplR PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 8.7e-06
Identity = 32/121 (26.45%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 78  KIANRKSWKQRTDMYMRPFV--------LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKD 137
           K  ++K+ +Q+  + +R  V        L V+ S++ I+A+++       +++AST  K 
Sbjct: 3   KQLDKKALRQKRHLRVRKNVRGTSEKPRLTVFKSQKHIYAQIIDDTKGVTLASASTTQKQ 62

Query: 138 LRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGIL 191
           L+  L    D+NA + +G LIAE+ KE  +  + +D     +  GK+  + +  +E G+ 
Sbjct: 63  LKEKLEKTWDENAAKEVGKLIAEKAKEKGITEIVFDRSGY-KYHGKVKALAEAARETGLK 122

[Close]

BLAST of CcUC05G084080 vs. ExPASy Swiss-Prot
Match: Q11HR8 (50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 31/93 (33.33%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 98  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEA 157
           L VY S + I+A+V+       ++AAS+  KDLR  L +  D +A  ++G LIAER K+A
Sbjct: 28  LSVYRSSKHIYAQVIDDVKGHTLAAASSLDKDLREKLKTGADVDAAGVVGKLIAERAKKA 87

Query: 158 DVFVLSYDPPNMERIQGKIGIVIDTIKENGILF 191
            +  + +D        G++  + D  +E G+ F
Sbjct: 88  GIDKVVFD-RGPYIYHGRVKALADAAREGGLEF 119

[Close]

BLAST of CcUC05G084080 vs. ExPASy Swiss-Prot
Match: B0U0X3 (50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / FSC 153 / O#319-036) OX=484022 GN=rplR PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 1.9e-05
Identity = 28/93 (30.11%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 98  LDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEA 157
           L VY + R ++A+V+    S V++AAST  KD++       + N+  I+G +IA RCKE 
Sbjct: 26  LCVYRTPRHVYAQVISGDGSTVLAAASTVEKDVKAKCKYTGNVNSAAIVGEVIANRCKEK 85

Query: 158 DVFVLSYDPPNMERIQGKIGIVIDTIKENGILF 191
            +  +++D     +  G++  + +  +E+G+ F
Sbjct: 86  GISQVAFDRSGY-KYHGRVKALAEAAREHGLQF 117

[Close]

BLAST of CcUC05G084080 vs. ExPASy TrEMBL
Match: A0A5A7U4A4 (50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003310 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 158/192 (82.29%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 1   MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 60
           +LSTSIPESSSSA       TL S F+ KP SS S  SSFS LSISF A K PSLSTHNT
Sbjct: 2   LLSTSIPESSSSA-------TLLSSFLQKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 61

Query: 61  KPFIQ-AAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 120
           K  I+ AAWTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 62  KSLIKAAAWTRRSRGEAAKSGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121

Query: 121 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIV 180
           VSAASTNCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SYDPP+MERIQ K+GIV
Sbjct: 122 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181

Query: 181 IDTIKENGILFV 192
           IDTIKENGI+FV
Sbjct: 182 IDTIKENGIIFV 185

[Close]

BLAST of CcUC05G084080 vs. ExPASy TrEMBL
Match: A0A0A0L7S5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.9e-76
Identity = 159/192 (82.81%), Postives = 168/192 (87.50%), Query Frame = 0


Query: 1   MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 60
           +LSTSIPESSSSA+      TL S F+ KP SS S  SSFS LSISF A K PSLSTHNT
Sbjct: 2   LLSTSIPESSSSAA------TLVSSFLHKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 61

Query: 61  KPFIQ-AAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 120
           K  I+ AAWTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 62  KFLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121

Query: 121 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIV 180
           VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVF +SYDPP+MERIQ K+GIV
Sbjct: 122 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181

Query: 181 IDTIKENGILFV 192
           IDTIKENGI+FV
Sbjct: 182 IDTIKENGIIFV 186

[Close]

BLAST of CcUC05G084080 vs. ExPASy TrEMBL
Match: A0A1S3AVM4 (50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.7e-76
Identity = 158/192 (82.29%), Postives = 167/192 (86.98%), Query Frame = 0


Query: 1   MLSTSIPESSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 60
           +LSTSIPESSSSA       TL S F+ KP SS S  SSFS LSISF A K PSLSTHNT
Sbjct: 2   LLSTSIPESSSSA-------TLLSSFLQKPTSS-SWSSSFSKLSISFDAIKAPSLSTHNT 61

Query: 61  KPFIQ-AAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 120
           K  I+ AAWTRRSRGEAAK  N+KSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV
Sbjct: 62  KSLIKAAAWTRRSRGEAAKRGNKKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 121

Query: 121 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIV 180
           VSAASTNCKDLRYSLPSP+DDNACRIIGNLIAERCKEADVF +SYDPP+MERIQ K+GIV
Sbjct: 122 VSAASTNCKDLRYSLPSPSDDNACRIIGNLIAERCKEADVFAMSYDPPSMERIQDKVGIV 181

Query: 181 IDTIKENGILFV 192
           IDTIKENGI+FV
Sbjct: 182 IDTIKENGIIFV 185

[Close]

BLAST of CcUC05G084080 vs. ExPASy TrEMBL
Match: A0A6J1FBY3 (uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC111444022 PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.6e-74
Identity = 153/191 (80.10%), Postives = 162/191 (84.82%), Query Frame = 0


Query: 2   LSTSIPESSS-SASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNT 61
           LS+SIP SSS SAS   PS TL S F+ KP +S+S PSSFS LSI   A KPPS STHN 
Sbjct: 4   LSSSIPGSSSWSASVHPPSATLLSGFIQKPTTSLSWPSSFSKLSI---AIKPPSPSTHNR 63

Query: 62  KPFIQAAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 121
              IQAAWTRRSRGE +K  NRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV
Sbjct: 64  NSIIQAAWTRRSRGETSKRPNRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVV 123

Query: 122 SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVI 181
           SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFV+SYDPP   +I+GKI IVI
Sbjct: 124 SAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVISYDPPKSAKIEGKIEIVI 183

Query: 182 DTIKENGILFV 192
           D IK+NGILFV
Sbjct: 184 DAIKDNGILFV 191

[Close]

BLAST of CcUC05G084080 vs. ExPASy TrEMBL
Match: A0A6J1CZ23 (uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016081 PE=4 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.5e-72
Identity = 150/192 (78.12%), Postives = 162/192 (84.38%), Query Frame = 0


Query: 1   MLSTSIPES-SSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHN 60
           MLS +IPE  SSSASA RPS  L + F+ KP +S+S PSSF  L ISF A   P  STH+
Sbjct: 1   MLSLTIPEPLSSSASALRPSARLLTGFIQKP-TSLSWPSSFPKLCISFDAIAAPPFSTHD 60

Query: 61  TKPFIQAAWTRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKV 120
              FI+AAWTRRSRGEAAK  NRKSWKQRTDMYMRPFVLDV+FSRRFIHAKVMHR TSKV
Sbjct: 61  RNSFIRAAWTRRSRGEAAKRPNRKSWKQRTDMYMRPFVLDVFFSRRFIHAKVMHRATSKV 120

Query: 121 VSAASTNCKDLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIV 180
           VSAASTN KDLRYSLPSPTDDNACRIIGN+IAERCKEADVFV+SY+PP  ERI+GKI IV
Sbjct: 121 VSAASTNSKDLRYSLPSPTDDNACRIIGNIIAERCKEADVFVMSYEPPKSERIEGKIEIV 180

Query: 181 IDTIKENGILFV 192
           IDTIKENGILFV
Sbjct: 181 IDTIKENGILFV 191

[Close]

BLAST of CcUC05G084080 vs. TAIR 10
Match: AT3G20230.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 198.0 bits (502), Expect = 7.0e-51
Identity = 108/183 (59.02%), Postives = 136/183 (74.32%), Query Frame = 0


Query: 9   SSSSASAFRPSPTLFSHFVGKPNSSVSCPSSFSNLSISFHANKPPSLSTHNTKPFIQAAW 68
           S+ S   F  + T  + F  K  S+VS  SSF  LSI   +     +   ++  F+QAAW
Sbjct: 7   STCSLVPFDSNLTRSNRFT-KLGSAVSWQSSFPKLSIEIGSVISSPIVKKDS--FVQAAW 66

Query: 69  TRRSRGEAAKIANRKSWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCK 128
           TRRSRGEAAK  NRKSWKQRTDMYMRPF+L+V+FSR+FIHAKVMHR TSKV+S A+TN +
Sbjct: 67  TRRSRGEAAKRPNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNAR 126

Query: 129 DLRYSLPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGI 188
           D+R ++PS  D+ ACR+IG LIAER  EADV+ +SY+P   ERI+GK+GIVIDTIKE+GI
Sbjct: 127 DIRTNIPSLVDNEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 186

Query: 189 LFV 192
           +FV
Sbjct: 187 IFV 186

[Close]

BLAST of CcUC05G084080 vs. TAIR 10
Match: AT1G08845.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-22
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 84  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNAC 143
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 78  SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 137

Query: 144 RIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGI 189
             IG +++ER KEADV+  SY P + ++ +GKI  V+ ++ +NGI
Sbjct: 138 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 182

[Close]

BLAST of CcUC05G084080 vs. TAIR 10
Match: AT1G08845.2 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.3e-22
Identity = 49/105 (46.67%), Postives = 70/105 (66.67%), Query Frame = 0


Query: 84  SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNAC 143
           S+KQRT  YM PF LDV+ S+RF+ A + HR T + V+ A TN KD++  L S  D  AC
Sbjct: 123 SFKQRTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPAC 182

Query: 144 RIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGI 189
             IG +++ER KEADV+  SY P + ++ +GKI  V+ ++ +NGI
Sbjct: 183 MSIGRILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227

[Close]

BLAST of CcUC05G084080 vs. TAIR 10
Match: AT3G22450.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.8e-15
Identity = 41/115 (35.65%), Postives = 69/115 (60.00%), Query Frame = 0


Query: 75  EAAKIANRK-SWKQRTDMYMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYS 134
           EA K   R  ++ Q T  +  PF LD+Y S+  + A V+HR TSKVV+ A +  KD+++ 
Sbjct: 176 EAVKKRERTFTFNQLTAPFHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFD 235

Query: 135 LPSPTDDNACRIIGNLIAERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGI 189
           L S  +  AC  +G ++A+R  E D+  + Y P   ++I+GK+ +V+  + +NG+
Sbjct: 236 LGSRRNVAACAAVGAVLAQRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGV 290

[Close]

BLAST of CcUC05G084080 vs. TAIR 10
Match: AT5G27820.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 68.6 bits (166), Expect = 6.4e-12
Identity = 32/97 (32.99%), Postives = 58/97 (59.79%), Query Frame = 0


Query: 92  YMRPFVLDVYFSRRFIHAKVMHRGTSKVVSAASTNCKDLRYSLPSPTDDNACRIIGNLIA 151
           Y++P+VL ++F+ +F+HA+V+H  T+ V  +AS+  K LR ++    D  A   IG ++ 
Sbjct: 15  YLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDITRDVAAASKIGKILG 74

Query: 152 ERCKEADVFVLSYDPPNMERIQGKIGIVIDTIKENGI 189
           ER    D+  ++      +R  GK+  VID+++E G+
Sbjct: 75  ERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGV 111

The following BLAST results are available for this feature:

BLAST of CcUC05G084080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905466.1	3.2e-82	86.39	50S ribosomal protein L18-like [Benincasa hispida]	[more]
KAA0049096.1	5.9e-76	82.29	50S ribosomal protein L18-like [Cucumis melo var. makuwa] >TYK17467.1 50S riboso...	[more]
XP_011650830.1	5.9e-76	82.81	uncharacterized protein LOC101221429 [Cucumis sativus] >KGN56667.1 hypothetical ...	[more]
XP_008438261.1	7.7e-76	82.29	PREDICTED: 50S ribosomal protein L18-like [Cucumis melo]	[more]
XP_022937699.1	9.4e-74	80.10	uncharacterized protein LOC111444022 [Cucurbita moschata]	[more]

BLAST of CcUC05G084080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5P316	5.5e-08	32.23	50S ribosomal protein L18 OS=Aromatoleum aromaticum (strain EbN1) OX=76114 GN=rp...	[more]
B5ZYV1	3.0e-06	35.83	50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii (strain WSM230...	[more]
A9BG02	8.7e-06	26.45	50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) OX=4038...	[more]
Q11HR8	1.9e-05	33.33	50S ribosomal protein L18 OS=Chelativorans sp. (strain BNC1) OX=266779 GN=rplR P...	[more]
B0U0X3	1.9e-05	30.11	50S ribosomal protein L18 OS=Francisella philomiragia subsp. philomiragia (strai...	[more]

BLAST of CcUC05G084080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4A4	2.9e-76	82.29	50S ribosomal protein L18-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L7S5	2.9e-76	82.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G127780 PE=4 SV=1	[more]
A0A1S3AVM4	3.7e-76	82.29	50S ribosomal protein L18-like OS=Cucumis melo OX=3656 GN=LOC103483425 PE=4 SV=1	[more]
A0A6J1FBY3	4.6e-74	80.10	uncharacterized protein LOC111444022 OS=Cucurbita moschata OX=3662 GN=LOC1114440...	[more]
A0A6J1CZ23	2.5e-72	78.13	uncharacterized protein LOC111016081 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of CcUC05G084080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20230.1	7.0e-51	59.02	Ribosomal L18p/L5e family protein	[more]
AT1G08845.1	2.3e-22	46.67	Ribosomal L18p/L5e family protein	[more]
AT1G08845.2	2.3e-22	46.67	Ribosomal L18p/L5e family protein	[more]
AT3G22450.1	2.8e-15	35.65	Ribosomal L18p/L5e family protein	[more]
AT5G27820.1	6.4e-12	32.99	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036967	Ribosomal protein S11 superfamily	GENE3D	3.30.420.80	Ribosomal protein S11	coord: 51..191 e-value: 7.5E-17 score: 63.5
IPR005484	Ribosomal protein L18	PFAM	PF00861	Ribosomal_L18p	coord: 94..190 e-value: 5.4E-9 score: 36.4
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 27..190
None	No IPR available	PANTHER	PTHR12899:SF16	OS02G0689700 PROTEIN	coord: 27..190
None	No IPR available	CDD	cd00432	Ribosomal_L18_L5e	coord: 85..188 e-value: 1.6164E-19 score: 77.1951
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 92..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC05G084080.1	CcUC05G084080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005840	ribosome
molecular_function	GO:0008097	5S rRNA binding
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome