CcUC04G076550 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G076550
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr04: 31732952 .. 31733290 (-)
RNA-Seq Expression	CcUC04G076550
Synteny	CcUC04G076550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTGTTCTCATTAGGAGGCCAAATGGTTACTCCAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAACGAGCAGATTCCATGGGGAAACCTTCGTATTTGAGAATTAGAATTCGGAGGCTGAAGTTTAGATTTGGGAGAAGATTGAAGAAGCTAAAGAAGAGTGCAATGGCAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTTGTTTCTCAGATCAGAAATTGCAAGTCTTTGTTTGGCCGAAAACAAACTAACTTTCCCAATTTTCCTCTTTTGTTATCATCTTGA

mRNA sequence

ATGAGTTTTGTTCTCATTAGGAGGCCAAATGGTTACTCCAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAACGAGCAGATTCCATGGGGAAACCTTCGTATTTGAGAATTAGAATTCGGAGGCTGAAGTTTAGATTTGGGAGAAGATTGAAGAAGCTAAAGAAGAGTGCAATGGCAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTTGTTTCTCAGATCAGAAATTGCAAGTCTTTGTTTGGCCGAAAACAAACTAACTTTCCCAATTTTCCTCTTTTGTTATCATCTTGA

Coding sequence (CDS)

ATGAGTTTTGTTCTCATTAGGAGGCCAAATGGTTACTCCAAGGTTGATAAAGAAGATCCAGAAGAGATAATTCATCGAAGAGCACAGTTTCTAATCAACAAAGTGTTGGAACGAGCAGATTCCATGGGGAAACCTTCGTATTTGAGAATTAGAATTCGGAGGCTGAAGTTTAGATTTGGGAGAAGATTGAAGAAGCTAAAGAAGAGTGCAATGGCAAGTATTTCAACTCTCAAGATTGGTGTTTACAAGCAAGTTGTTTCTCAGATCAGAAATTGCAAGTCTTTGTTTGGCCGAAAACAAACTAACTTTCCCAATTTTCCTCTTTTGTTATCATCTTGA

Protein sequence

MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFGRRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS

Homology

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BLAST of CcUC04G076550 vs. NCBI nr
Match: XP_038883675.1 (uncharacterized protein LOC120074584 [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 5.0e-51
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           RRLKKLKKSAMASISTLKIGVYKQV+SQIRNCKSLFG KQT+FPNFPLLLSS
Sbjct: 61  RRLKKLKKSAMASISTLKIGVYKQVISQIRNCKSLFGPKQTHFPNFPLLLSS 112

[Close]

BLAST of CcUC04G076550 vs. NCBI nr
Match: KGN49119.1 (hypothetical protein Csa_003853 [Cucumis sativus])

HSP 1 Score: 197.2 bits (500), Expect = 7.5e-47
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MS VL +R NGY KVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           RRLK+LKKSAM SISTLKIGVYKQV++QIRNCKSLFGRKQTNF NFP+LLSS
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 112

[Close]

BLAST of CcUC04G076550 vs. NCBI nr
Match: XP_008439979.1 (PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo] >TYK13053.1 uncharacterized protein E5676_scaffold255G006550 [Cucumis melo var. makuwa])

HSP 1 Score: 194.1 bits (492), Expect = 6.4e-46
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSFVL +RPNGY KVDKEDPEEII RRAQFLINKVLERADSMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           +RLKKLKKSAMASISTLK+GVYKQV++QIRN KSLFGRKQT F NFP+LLSS
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLSS 112

[Close]

BLAST of CcUC04G076550 vs. NCBI nr
Match: XP_022142336.1 (uncharacterized protein LOC111012478 [Momordica charantia])

HSP 1 Score: 185.3 bits (469), Expect = 3.0e-43
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSF+LIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERA+SMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSFLLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERAESMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           RRLKKLKKSA+ASIS  KIGVYKQV+ Q+RNCKSLFGRK+    N    LSS
Sbjct: 61  RRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFLSS 112

[Close]

BLAST of CcUC04G076550 vs. NCBI nr
Match: XP_023003962.1 (uncharacterized protein LOC111497408 [Cucurbita maxima])

HSP 1 Score: 184.9 bits (468), Expect = 3.9e-43
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSFVL++  NGYSKVDKEDPEEIIHRRAQF+INKVLERADSMGK SYLRIRIRRL+ RFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           RRLKKLKKSAMASI  +KI VYKQ++ QIRNCKSLFGRK+TNF N P LLSS
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLLSS 112

[Close]

BLAST of CcUC04G076550 vs. ExPASy TrEMBL
Match: A0A0A0KJX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 3.6e-47
Identity = 100/112 (89.29%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MS VL +R NGY KVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSLVLTKRSNGYCKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           RRLK+LKKSAM SISTLKIGVYKQV++QIRNCKSLFGRKQTNF NFP+LLSS
Sbjct: 61  RRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLSS 112

[Close]

BLAST of CcUC04G076550 vs. ExPASy TrEMBL
Match: A0A5D3CMA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006550 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.1e-46
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSFVL +RPNGY KVDKEDPEEII RRAQFLINKVLERADSMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           +RLKKLKKSAMASISTLK+GVYKQV++QIRN KSLFGRKQT F NFP+LLSS
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLSS 112

[Close]

BLAST of CcUC04G076550 vs. ExPASy TrEMBL
Match: A0A1S3B0N9 (uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.1e-46
Identity = 99/112 (88.39%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSFVL +RPNGY KVDKEDPEEII RRAQFLINKVLERADSMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSFVLTKRPNGYCKVDKEDPEEIIRRRAQFLINKVLERADSMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           +RLKKLKKSAMASISTLK+GVYKQV++QIRN KSLFGRKQT F NFP+LLSS
Sbjct: 61  KRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLSS 112

[Close]

BLAST of CcUC04G076550 vs. ExPASy TrEMBL
Match: A0A6J1CLW2 (uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012478 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 94/112 (83.93%), Postives = 100/112 (89.29%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSF+LIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERA+SMGKPSYLRIRIRRLK RFG
Sbjct: 1   MSFLLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERAESMGKPSYLRIRIRRLKVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           RRLKKLKKSA+ASIS  KIGVYKQV+ Q+RNCKSLFGRK+    N    LSS
Sbjct: 61  RRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFLSS 112

[Close]

BLAST of CcUC04G076550 vs. ExPASy TrEMBL
Match: A0A6J1KP23 (uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 93/112 (83.04%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLRIRIRRLKFRFG 60
           MSFVL++  NGYSKVDKEDPEEIIHRRAQF+INKVLERADSMGK SYLRIRIRRL+ RFG
Sbjct: 1   MSFVLVKSSNGYSKVDKEDPEEIIHRRAQFIINKVLERADSMGKASYLRIRIRRLRVRFG 60

Query: 61  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLFGRKQTNFPNFPLLLSS 113
           RRLKKLKKSAMASI  +KI VYKQ++ QIRNCKSLFGRK+TNF N P LLSS
Sbjct: 61  RRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLLSS 112

[Close]

BLAST of CcUC04G076550 vs. TAIR 10
Match: AT1G11655.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 22 Blast hits to 22 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 22; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-12
Identity = 41/105 (39.05%), Postives = 66/105 (62.86%), Query Frame = 0


Query: 5   LIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGK----PSYLRIRIRRLKFRFG 64
           L +RP  YSK+DKEDPEE++ RRA+FLI K L+ AD + +     S++R+++  LK + G
Sbjct: 3   LFKRPCLYSKMDKEDPEEVLSRRAKFLIYKTLQEADLISRRDPHSSFIRLKLYLLKVKIG 62

Query: 65  RRLKKLKKSAMASISTLKIGVYKQVVSQIRNCKSLF-GRKQTNFP 105
           +RL KL++S ++++     G+ K   + +R  K +F G   T  P
Sbjct: 63  KRLAKLRRSVVSAVRF--GGIRKHSHNGVRALKKMFQGGATTGLP 105

[Close]

BLAST of CcUC04G076550 vs. TAIR 10
Match: AT4G04745.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G21902.1); Has 32 Blast hits to 32 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-11
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = 0


Query: 1   MSFVLIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERADSMGKPSYLR---------IR 60
           M+ ++   P  Y+K++KEDP+E+IHRRAQFLI KVLERADS  +    R         IR
Sbjct: 26  MALMVKNSPYEYTKMEKEDPQELIHRRAQFLIQKVLERADSKTRQHQQRRRSSGPLIMIR 85

Query: 61  IRRLKFRFGRRLKKLKKS 70
           +  ++ R G++L+KL+K+
Sbjct: 86  VVGIRMRIGKKLRKLRKT 103

[Close]

BLAST of CcUC04G076550 vs. TAIR 10
Match: AT4G21902.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G04745.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.3 bits (142), Expect = 2.3e-09
Identity = 30/76 (39.47%), Postives = 53/76 (69.74%), Query Frame = 0


Query: 5  LIRRPNGYSKVDKEDPEEIIHRRAQFLINKVLERAD------SMGKPSYLRI---RIRRL 64
          +++ PN Y+K++KED  EIIHRRAQFLI+K+L+RAD         + + +++   R+  +
Sbjct: 3  MMKNPNQYTKIEKEDLNEIIHRRAQFLIHKILQRADIETLRQQQKRNTTIKLFSFRVVGI 62

Query: 65 KFRFGRRLKKLKKSAM 72
          + + G++L+KL+KS +
Sbjct: 63 RMKIGKKLRKLRKSCV 78

The following BLAST results are available for this feature:

BLAST of CcUC04G076550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038883675.1	5.0e-51	96.43	uncharacterized protein LOC120074584 [Benincasa hispida]	[more]
KGN49119.1	7.5e-47	89.29	hypothetical protein Csa_003853 [Cucumis sativus]	[more]
XP_008439979.1	6.4e-46	88.39	PREDICTED: uncharacterized protein LOC103484604 [Cucumis melo] >TYK13053.1 uncha...	[more]
XP_022142336.1	3.0e-43	83.93	uncharacterized protein LOC111012478 [Momordica charantia]	[more]
XP_023003962.1	3.9e-43	83.04	uncharacterized protein LOC111497408 [Cucurbita maxima]	[more]

BLAST of CcUC04G076550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G076550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJX3	3.6e-47	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1	[more]
A0A5D3CMA4	3.1e-46	88.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B0N9	3.1e-46	88.39	uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=...	[more]
A0A6J1CLW2	1.4e-43	83.93	uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]
A0A6J1KP23	1.9e-43	83.04	uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408...	[more]

BLAST of CcUC04G076550 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G11655.1	1.7e-12	39.05	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G04745.1	2.4e-11	44.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G21902.1	2.3e-09	39.47	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35687:SF1	OS07G0516700 PROTEIN	coord: 4..101
None	No IPR available	PANTHER	PTHR35687	OS07G0516700 PROTEIN	coord: 4..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G076550.1	CcUC04G076550.1	mRNA