CcUC04G075860 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G075860
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionSPBc2 prophage-derived uncharacterized protein yotK
LocationCicolChr04: 31273141 .. 31273644 (-)
RNA-Seq ExpressionCcUC04G075860
SyntenyCcUC04G075860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTATTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCGAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCCTCAATTTCACATCCTCATCATGAGTTAATGATGATGAAGAAGAAGAAGAAGGAGGTAGAACCAACAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCATACTACTACTACTAGTCCTACAACTTCTTGTGATAGTGCCATCTCTTTCATTACTAAACTAAATGATCATGAATACTCTGACTCTGATACCGGTGTTGATACTTCTCTTCACTTGTAA

mRNA sequence

ATGGGTATTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCGAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCCTCAATTTCACATCCTCATCATGAGTTAATGATGATGAAGAAGAAGAAGAAGGAGGTAGAACCAACAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCATACTACTACTACTAGTCCTACAACTTCTTGTGATAGTGCCATCTCTTTCATTACTAAACTAAATGATCATGAATACTCTGACTCTGATACCGGTGTTGATACTTCTCTTCACTTGTAA

Coding sequence (CDS)

ATGGGTATTAGAAAGAATGATGAAGAGGCATCTGTTGCTGTTCATTCCTCCATTGCTTTACTTCAAGAGAGATTCAGACAACTACAGAAAATGAAGGAGATGAGAGAAGAAAGAGAGTTTGTGAAATTGCTATCTCTTTCTCAATCCCCGAAAACACATAGCTGCTGCAGCTTCTTCTTCAACAATACAAATACTTGTGTGCTTTTTGAGCCCTCAATTTCACATCCTCATCATGAGTTAATGATGATGAAGAAGAAGAAGAAGGAGGTAGAACCAACAATCTTAACATTGCTGCCTCAAACATCTCTATCTCTCTCCTTAACTTCTTCAAATGATCAACCCAACAATAATATCCCAACTTTGATGGACTTATGGCCACTGCCTCATACTACTACTACTAGTCCTACAACTTCTTGTGATAGTGCCATCTCTTTCATTACTAAACTAAATGATCATGAATACTCTGACTCTGATACCGGTGTTGATACTTCTCTTCACTTGTAA

Protein sequence

MGIRKNDEEASVAVHSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNTNTCVLFEPSISHPHHELMMMKKKKKEVEPTILTLLPQTSLSLSLTSSNDQPNNNIPTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHEYSDSDTGVDTSLHL
Homology
BLAST of CcUC04G075860 vs. NCBI nr
Match: TYK12991.1 (hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa])

HSP 1 Score: 218.0 bits (554), Expect = 6.1e-53
Identity = 131/189 (69.31%), Postives = 149/189 (78.84%), Query Frame = 0

Query: 3   IRKNDEEASVAVH-SSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFN 62
           IRK+++EASV VH SSIALLQERFRQLQK+KEMREERE VKLLSLSQ PKTHSCCSFFFN
Sbjct: 6   IRKDNQEASVVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTHSCCSFFFN 65

Query: 63  ----NTNTCVLFEPSISH--PHHELMMMKKKKK-----EVEPTILTLLPQTSLSLSLTSS 122
               NTNTCV+FEPSIS+  PHHELMM  KKKK         T+LTLLPQTSLSLSLT+S
Sbjct: 66  NTNTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTSLSLSLTTS 125

Query: 123 ND-----QPNNNIPTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHE-------YSDSD 168
           +      Q +NNIPTLMDLWP+P +T+T+ ++SCDSAISFI+KLNDH+       Y DSD
Sbjct: 126 SSHDHDHQQSNNIPTLMDLWPVPSSTSTT-SSSCDSAISFISKLNDHDHHDRDHHYFDSD 185

BLAST of CcUC04G075860 vs. NCBI nr
Match: KGN49044.1 (hypothetical protein Csa_002770 [Cucumis sativus])

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 132/191 (69.11%), Postives = 146/191 (76.44%), Query Frame = 0

Query: 3   IRK-NDEEASVAVH-SSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFF 62
           IRK N E ASV +H SSIALLQERFRQLQK+KEMREE+E VKLLSLSQ PKTH+CCSFFF
Sbjct: 6   IRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFF 65

Query: 63  NN-----TNTCVLFEPSIS--HPHHELMMMKKKKK-----EVEPTILTLLPQTSLSLSLT 122
           NN     TNTCV+FEPSIS  +PHHELMM  KKKK         T+LTLLPQTSLSLSLT
Sbjct: 66  NNTNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLT 125

Query: 123 SSND-----QPNNNIPTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHE-------YSD 168
           SS+      Q +NNIPTLMDLWP+P  ++TS T+SCDSAISFITKLNDH+       Y D
Sbjct: 126 SSSSHDHDHQQSNNIPTLMDLWPVP-ASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFD 185

BLAST of CcUC04G075860 vs. NCBI nr
Match: KAG6594702.1 (hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 8.3e-26
Identity = 87/173 (50.29%), Postives = 110/173 (63.58%), Query Frame = 0

Query: 1   MGIRKNDEEASVAVHSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFF 60
           MG  +++   S+ V SSIALLQERFRQLQK+KEMREERE V+LLSLS +PK H       
Sbjct: 1   MGTHQSNHHPSLVVQSSIALLQERFRQLQKVKEMREERELVRLLSLS-NPKKHGL----- 60

Query: 61  NNTNTCVLFEPSISHPHHELMMMKKKKKEVEPTILTLLPQTSLSLSLTSSNDQP------ 120
              NTCVLFEPS++     +M+       +  T +  LPQTSLSL  TS +         
Sbjct: 61  --FNTCVLFEPSVA---TMMMLPTTTTTTMTATKMLTLPQTSLSLWPTSPSPGKKLTVGV 120

Query: 121 NNNIPTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHEYSDSDTGVDTSLHL 168
           + ++P LM+LWP+  + TTS ++SCDSAIS I+KL     SDSD  VDTSLHL
Sbjct: 121 DVDVPALMNLWPV-DSVTTSTSSSCDSAISLISKLEHDHESDSDIDVDTSLHL 161

BLAST of CcUC04G075860 vs. NCBI nr
Match: XP_015878993.1 (uncharacterized protein LOC107415217 [Ziziphus jujuba])

HSP 1 Score: 83.6 bits (205), Expect = 1.8e-12
Identity = 69/169 (40.83%), Postives = 92/169 (54.44%), Query Frame = 0

Query: 12  VAVHSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNTNTCVLFEP 71
           +A+HSSIALLQERFRQLQ+MKEMRE +E +++L +  + +  S       N N  + FEP
Sbjct: 9   IAIHSSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQSDI-----NLNPTLYFEP 68

Query: 72  SISHPHHELMMMKKKKKEVEPTILTLLPQTSLSLSLTSSNDQPNNNI------------- 131
             S P+ + +          P I  +  Q SLSL     N + N NI             
Sbjct: 69  PKSFPNPDFL---------TPQIRPISQQDSLSL---WQNLRSNMNIEDFRGIEISCCVP 128

Query: 132 PTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHEYSDSDTGVDTSLHL 168
           PTLM+LWP+  T ++S  +S  S+ S I K  D   SDSD+ VDTSLHL
Sbjct: 129 PTLMNLWPVNDTPSSSNASS--SSSSNIYKFED---SDSDSDVDTSLHL 155

BLAST of CcUC04G075860 vs. NCBI nr
Match: KAF3451851.1 (hypothetical protein FNV43_RR07947 [Rhamnella rubrinervis])

HSP 1 Score: 79.0 bits (193), Expect = 4.4e-11
Identity = 59/161 (36.65%), Postives = 95/161 (59.01%), Query Frame = 0

Query: 9   EASVAVHSSIALLQERFRQLQKMKEMREEREFV-KLLSLSQSPKTHSCCSFFFNNTNTCV 68
           E    VHSSIALLQERFRQLQ+MKEMREE+E + ++L++++S   H    +   +    +
Sbjct: 7   ECPSVVHSSIALLQERFRQLQRMKEMREEKELINRMLAVAESNNKH----YLNIHVKPTM 66

Query: 69  LFEPSISHPH-HELMMMKKKKKEVEPTILTLLPQTSLSLSLTSSNDQPNNNIPTLMDLWP 128
            FEP+   P     + ++ + ++      + +   S+  S  SS  +P      LM+LWP
Sbjct: 67  YFEPACLFPKPQRAIQVQPQNQDSVSQWQSNVEYRSVESSSISSCTRP------LMNLWP 126

Query: 129 LPHTTTTSPTTSCDSAISFITKLNDHEYSDSDTGVDTSLHL 168
           + + T   P++S D+++SF +KL++    DS++ VDTSLHL
Sbjct: 127 IDYDT---PSSSSDASLSF-SKLSEEYLCDSESDVDTSLHL 153

BLAST of CcUC04G075860 vs. ExPASy TrEMBL
Match: A0A5D3CME5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G005880 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 3.0e-53
Identity = 131/189 (69.31%), Postives = 149/189 (78.84%), Query Frame = 0

Query: 3   IRKNDEEASVAVH-SSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFN 62
           IRK+++EASV VH SSIALLQERFRQLQK+KEMREERE VKLLSLSQ PKTHSCCSFFFN
Sbjct: 6   IRKDNQEASVVVHSSSIALLQERFRQLQKVKEMREEREVVKLLSLSQYPKTHSCCSFFFN 65

Query: 63  ----NTNTCVLFEPSISH--PHHELMMMKKKKK-----EVEPTILTLLPQTSLSLSLTSS 122
               NTNTCV+FEPSIS+  PHHELMM  KKKK         T+LTLLPQTSLSLSLT+S
Sbjct: 66  NTNTNTNTCVVFEPSISNSSPHHELMMTMKKKKVPSSSSSTTTMLTLLPQTSLSLSLTTS 125

Query: 123 ND-----QPNNNIPTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHE-------YSDSD 168
           +      Q +NNIPTLMDLWP+P +T+T+ ++SCDSAISFI+KLNDH+       Y DSD
Sbjct: 126 SSHDHDHQQSNNIPTLMDLWPVPSSTSTT-SSSCDSAISFISKLNDHDHHDRDHHYFDSD 185

BLAST of CcUC04G075860 vs. ExPASy TrEMBL
Match: A0A0A0KJS5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 7.3e-52
Identity = 132/191 (69.11%), Postives = 146/191 (76.44%), Query Frame = 0

Query: 3   IRK-NDEEASVAVH-SSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFF 62
           IRK N E ASV +H SSIALLQERFRQLQK+KEMREE+E VKLLSLSQ PKTH+CCSFFF
Sbjct: 6   IRKDNQEAASVLLHSSSIALLQERFRQLQKVKEMREEKEVVKLLSLSQYPKTHTCCSFFF 65

Query: 63  NN-----TNTCVLFEPSIS--HPHHELMMMKKKKK-----EVEPTILTLLPQTSLSLSLT 122
           NN     TNTCV+FEPSIS  +PHHELMM  KKKK         T+LTLLPQTSLSLSLT
Sbjct: 66  NNTNTNSTNTCVVFEPSISNNNPHHELMMTMKKKKVPSSSSTTTTMLTLLPQTSLSLSLT 125

Query: 123 SSND-----QPNNNIPTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHE-------YSD 168
           SS+      Q +NNIPTLMDLWP+P  ++TS T+SCDSAISFITKLNDH+       Y D
Sbjct: 126 SSSSHDHDHQQSNNIPTLMDLWPVP-ASSTSTTSSCDSAISFITKLNDHDHHDHDHHYFD 185

BLAST of CcUC04G075860 vs. ExPASy TrEMBL
Match: A0A6P3ZU56 (uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC107415217 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 8.7e-13
Identity = 69/169 (40.83%), Postives = 92/169 (54.44%), Query Frame = 0

Query: 12  VAVHSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNTNTCVLFEP 71
           +A+HSSIALLQERFRQLQ+MKEMRE +E +++L +  + +  S       N N  + FEP
Sbjct: 9   IAIHSSIALLQERFRQLQRMKEMREGKELIRMLVVEPNKQKQSDI-----NLNPTLYFEP 68

Query: 72  SISHPHHELMMMKKKKKEVEPTILTLLPQTSLSLSLTSSNDQPNNNI------------- 131
             S P+ + +          P I  +  Q SLSL     N + N NI             
Sbjct: 69  PKSFPNPDFL---------TPQIRPISQQDSLSL---WQNLRSNMNIEDFRGIEISCCVP 128

Query: 132 PTLMDLWPLPHTTTTSPTTSCDSAISFITKLNDHEYSDSDTGVDTSLHL 168
           PTLM+LWP+  T ++S  +S  S+ S I K  D   SDSD+ VDTSLHL
Sbjct: 129 PTLMNLWPVNDTPSSSNASS--SSSSNIYKFED---SDSDSDVDTSLHL 155

BLAST of CcUC04G075860 vs. ExPASy TrEMBL
Match: W9SFE8 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 66/175 (37.71%), Postives = 93/175 (53.14%), Query Frame = 0

Query: 4   RKNDEEASVAVHSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNT 63
           R+  ++    VHSSIALLQERFRQLQ++KE+REERE +++LS       ++  +   N T
Sbjct: 3   REIHDQTHAVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMN---NPT 62

Query: 64  NTC----VLFEPSISHPHHELMMMKKKKKEVEPTI-LTLLPQTSLSLSLTSSNDQ----- 123
             C    ++F     H HH L+  + +     P + L+L P  +L  S ++S DQ     
Sbjct: 63  MICEPSRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWP--ALQCSSSASEDQYYCSS 122

Query: 124 PNNNIPTL-MDLWPLPHTTTTSPTTSCDSAISFITKLNDHEYSDSDTGVDTSLHL 168
            N+  P L M LWPL  T   +  +   S  S +    DH+YSD    VDTSLHL
Sbjct: 123 INDQTPLLMMKLWPL-DTHAPAEFSEASSDKSHLDSDPDHDYSD----VDTSLHL 167

BLAST of CcUC04G075860 vs. ExPASy TrEMBL
Match: W9QDY3 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.4e-10
Identity = 66/175 (37.71%), Postives = 93/175 (53.14%), Query Frame = 0

Query: 4   RKNDEEASVAVHSSIALLQERFRQLQKMKEMREEREFVKLLSLSQSPKTHSCCSFFFNNT 63
           R+  ++    VHSSIALLQERFRQLQ++KE+REERE +++LS       ++  +   N T
Sbjct: 3   REIHDQTHAVVHSSIALLQERFRQLQRVKEVREERELLRILSEHNINNNNNLMN---NPT 62

Query: 64  NTC----VLFEPSISHPHHELMMMKKKKKEVEPTI-LTLLPQTSLSLSLTSSNDQ----- 123
             C    ++F     H HH L+  + +     P + L+L P  +L  S ++S DQ     
Sbjct: 63  MICEPLRLVFHSDHHHHHHHLIFPQIRSSPSAPQVSLSLWP--ALQCSSSASEDQYYCSS 122

Query: 124 PNNNIPTL-MDLWPLPHTTTTSPTTSCDSAISFITKLNDHEYSDSDTGVDTSLHL 168
            N+  P L M LWPL  T   +  +   S  S +    DH+YSD    VDTSLHL
Sbjct: 123 INDQTPLLMMKLWPL-DTHAPAEFSEASSDKSHLDSDPDHDYSD----VDTSLHL 167

BLAST of CcUC04G075860 vs. TAIR 10
Match: AT4G16447.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.9e-04
Identity = 20/35 (57.14%), Postives = 27/35 (77.14%), Query Frame = 0

Query: 7  DEEASVAVHSSIALLQERFRQLQKMKEMREEREFV 42
          D +  + +HSSI LLQERFRQLQ+ +E+R ERE +
Sbjct: 7  DRKEQMVIHSSIVLLQERFRQLQRARELRAERELL 41

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK12991.16.1e-5369.31hypothetical protein E5676_scaffold255G005880 [Cucumis melo var. makuwa][more]
KGN49044.11.5e-5169.11hypothetical protein Csa_002770 [Cucumis sativus][more]
KAG6594702.18.3e-2650.29hypothetical protein SDJN03_11255, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_015878993.11.8e-1240.83uncharacterized protein LOC107415217 [Ziziphus jujuba][more]
KAF3451851.14.4e-1136.65hypothetical protein FNV43_RR07947 [Rhamnella rubrinervis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CME53.0e-5369.31Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KJS57.3e-5269.11Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G511110 PE=4 SV=1[more]
A0A6P3ZU568.7e-1340.83uncharacterized protein LOC107415217 OS=Ziziphus jujuba OX=326968 GN=LOC10741521... [more]
W9SFE81.4e-1037.71Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000264 PE=4 SV=1[more]
W9QDY31.4e-1037.71Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_010582 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G16447.11.9e-0457.14unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 18..38
NoneNo IPR availablePANTHERPTHR34570:SF2OS03G0593100 PROTEINcoord: 6..167
NoneNo IPR availablePANTHERPTHR34570OS03G0593100 PROTEINcoord: 6..167

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G075860.1CcUC04G075860.1mRNA