CcUC04G074510 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G074510
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 30450629 .. 30451335 (-)
RNA-Seq ExpressionCcUC04G074510
SyntenyCcUC04G074510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTAACAAGTTGCATAAAGGCAAAGGAAAAACTGCAAGTAAAGTTATTATGACCCAATTCATAATCACCAAAGGGAAACCTACCAGTAGCACTGTTTTTTCGAGTTCAATTTGCATTAATGATCATTGGCCCTTGAATACAAAAGTCGGAGATAATGGTGGAGTATCCTACTGGTAAAGATTAAGCGAAGGCCCAGCAAATTGAAACACAATCCAACCATCAAACATGACAAAAATGGAAGCATAAGCAAATTTGTAGAGCCAAAACAACAAACCCTTTTCTCCCATATTCAGCTCCATTGCCTACGCCACGCTCATGCCAACAATTATTTTGAAAGCGGCCAATTATGTCTTAATCACACATGAGACGAGCAGTATTAAAATACAAGTCGAGCACTTTTAAATGCAATCACAAGTTCAGACTTTACAAACTTGTTGTCTTTCCCATAGATTGGGTGTCTAAGTATCTTTACATGATAGAACCAATGGGAAAAATGTTACATCTTGCACGTGAAGATCACCAAAGGCCCTGCAGAAGAAAATCTAATGCTAGCCTGCATTCAACTTCATATCTACGATCGTATTAACATTGACTACCCTCTAGATCTCAGATATTTTGGCCAATCTTCCTCCATATGTTTCAATGCCATTGTGTTTAAGGTCGAATCTATGAAAGCTTTGAGTTTCCCTTCAAATTTGGGTGCTTTA

mRNA sequence

AGTAACAAGTTGCATAAAGGCAAAGGAAAAACTGCAAGTAAAGTTATTATGACCCAATTCATAATCACCAAAGGGAAACCTACCAGTAGCACTGTTTTTTCGAGTTCAATTTGCATTAATGATCATTGGCCCTTGAATACAAAAGTCGGAGATAATGGTGGAATCACCAAAGGCCCTGCAGAAGAAAATCTAATGCTAGCCTGCATTCAACTTCATATCTACGATCGTATTAACATTGACTACCCTCTAGATCTCAGATATTTTGGCCAATCTTCCTCCATATGTTTCAATGCCATTGTGTTTAAGGTCGAATCTATGAAAGCTTTGAGTTTCCCTTCAAATTTGGGTGCTTTA

Coding sequence (CDS)

AGTAACAAGTTGCATAAAGGCAAAGGAAAAACTGCAAGTAAAGTTATTATGACCCAATTCATAATCACCAAAGGGAAACCTACCAGTAGCACTGTTTTTTCGAGTTCAATTTGCATTAATGATCATTGGCCCTTGAATACAAAAGTCGGAGATAATGGTGGAATCACCAAAGGCCCTGCAGAAGAAAATCTAATGCTAGCCTGCATTCAACTTCATATCTACGATCGTATTAACATTGACTACCCTCTAGATCTCAGATATTTTGGCCAATCTTCCTCCATATGTTTCAATGCCATTGTGTTTAAGGTCGAATCTATGAAAGCTTTGAGTTTCCCTTCAAATTTGGGTGCTTTA

Protein sequence

SNKLHKGKGKTASKVIMTQFIITKGKPTSSTVFSSSICINDHWPLNTKVGDNGGITKGPAEENLMLACIQLHIYDRINIDYPLDLRYFGQSSSICFNAIVFKVESMKALSFPSNLGAL
Homology
[Close]
BLAST of CcUC04G074510 vs. NCBI nr
Match: KGN54774.1 (hypothetical protein Csa_012735 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.8e-12
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 55  ITKGPAEENLMLACIQLHIYDRINIDYPLDLRYFGQSSSICFNAIVFKVESMKALSF 112
           + + PAEENL+LACIQLHI++RIN DYPLDLRYFGQSS    NAIV KV+S   +SF
Sbjct: 8   VRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPHFISF 64

[Close]
BLAST of CcUC04G074510 vs. ExPASy TrEMBL
Match: A0A0A0L142 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G492190 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.3e-12
Identity = 39/57 (68.42%), Postives = 46/57 (80.70%), Query Frame = 0 

Query: 55  ITKGPAEENLMLACIQLHIYDRINIDYPLDLRYFGQSSSICFNAIVFKVESMKALSF 112
           + + PAEENL+LACIQLHI++RIN DYPLDLRYFGQSS    NAIV KV+S   +SF
Sbjct: 8   VRRKPAEENLVLACIQLHIHNRINTDYPLDLRYFGQSSPTYSNAIVSKVKSPHFISF 64

The following BLAST results are available for this feature:
BLAST of CcUC04G074510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN54774.14.8e-1268.42hypothetical protein Csa_012735 [Cucumis sativus][more]
BLAST of CcUC04G074510 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G074510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L1422.3e-1268.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G492190 PE=4 SV=1[more]
BLAST of CcUC04G074510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G074510.1CcUC04G074510.1mRNA