CcUC04G072200 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G072200
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr04: 28839844 .. 28841433 (-)
RNA-Seq Expression	CcUC04G072200
Synteny	CcUC04G072200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTAGATCTTGAAATATAGCAAGTACTAAAAAGGAAAGAGCTAATGATCTGCTTACAGATAAGCCAAGCTGCTCAATCAAGTTCTCCACCCGTTGCTTTTTTTCGTTTGTTGGAATTGGACCAAGCCGGAAGTCTGCTGCAAACATCAGAGTTTCATATACAGTGAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGACTCATATCCATGCCATCCAAAGAAACTCTACCCTTCAGGCTTCCACTTGCAATTCTTCCCGCCAGGCCATCCAAGAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGAATACCCCGAAATTCTGTGCAACAAGTCTACTTCTTGCTTCACCAGTTTCCCTTCATGTTCCTTGTCTTTTAACACAGTATAAGTAAGGTCAAAAAACTCAAGCCCACCATTGAACTTTGTAGTTTTACCAACGTCAATGATCATTTCACGACGATTACCACCACTATGAGCCATCTTTCCTGGTTAGTGTAGCGAGCTTTGTATAGAATGAAAACTAAAAAACCATGCAGAAAGGGAGTTGAAAGATTTCAGGTTCGTTTTCTTTTCCTTCTTTTGGGGGTCTCCCAATTTTTTGGCTTTACGAAGCCGAAGAGGAGTTAAATGGACGCTACACCTGGGTGGGTCAGCGTAGAAGAGGAGCAAAATCCAAAGTTGGTATTATATCCCGTTCTTCGAAAAATCCGTACTAGATCGTATGGGTCACAAAGAACTAGAAACTTTCTTGTTTTCTTCATCGCTGAGTTTTGGCTTATGCCTAGCGTTTGTGTTTATAGCACGCGAGCCCCATGCTGTTTTTCATTTGAGTCCTTGTTGGGATAAACATCCCGACGACAGTTGGATATTGGAGTTTGTCATTTGTGATAATAACAGCATAGTAACAACGTTTTGCTTCTGTCATCAGTGTCGTAAGGACCTGTCTACATTTGCAGTTCAATTAGAGGAAAACACATTTTACAATATTGAACTAATGAAGGAGTTATTTGTTATAGATTTGATTGTTGAACTTGAATATCTGTTGTTGCAATGTAAACTTTACTATTAAATCTGTCAGTTTTCTCGCAATACCCCATTAGCCTTCTAAACTGAGCAAAGGATGTTTCCTTCTTGGCTTGTTCACCATGAGCAAATGATGTTAAAACTTCCATATGGTTCTTGATTCTTGAGAACCTCCTAACTTTATTATATAACGTTGTCACCTCTAGTCATAGATACACTAAATTTATGTCTTACATAATGATGAAGTTTGAAACAAACAGAGTAAGGTTTAGCTAGTAGGCAAACAGACACCAGGGATCACAGCACCAGCAGCACTGGTCAACAAGACAGCAGCAGCAAAGCGCAGCAAGACTGAACAATGAGACCGGAAATATTAGGTTGTTATAAACACAGAAAAATAAGCGATATCTAACTTGAAATTACCAAGCCTCCAGGCATCCCGGTCCCTGGGGAGGAGCGGCTGCATATTGTGGCGGCGCCACCACTGGAGGCGGTGGCGGCCCCTGA

mRNA sequence

ATGGCAAGTACTAAAAAGGAAAGAGCTAATGATCTGCTTACAGATAAGCCAAGCTGCTCAATCAAGTTCTCCACCCGTTGCTTTTTTTCGTTTGTTGGAATTGGACCAAGCCGGAAGTCTGCTGCAAACATCAGAGTTTCATATACAGTGAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGACTCATATCCATGCCATCCAAAGAAACTCTACCCTTCAGGCTTCCACTTGCAATTCTTCCCGCCAGGCCATCCAAGAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGAATACCCCGAAATTCTGTGCAACAAGTCTACTTCTTGCTTCACCAGTTTCCCTTCATGTTCCTTGTCTTTTAACACAGCAAACAGACACCAGGGATCACAGCACCAGCAGCACTGGTCAACAAGACAGCAGCAGCAAAGCGCAGCAAGACTGAACAATGAGACCGGAAATATTAGGCATCCCGGTCCCTGGGGAGGAGCGGCTGCATATTGTGGCGGCGCCACCACTGGAGGCGGTGGCGGCCCCTGA

Coding sequence (CDS)

ATGGCAAGTACTAAAAAGGAAAGAGCTAATGATCTGCTTACAGATAAGCCAAGCTGCTCAATCAAGTTCTCCACCCGTTGCTTTTTTTCGTTTGTTGGAATTGGACCAAGCCGGAAGTCTGCTGCAAACATCAGAGTTTCATATACAGTGAGCTTTGGGAAGAGCCTGTCATCTTGCATGATATATGCAGAAGTTCTTTTAATCAAGCCTGGACTCATATCCATGCCATCCAAAGAAACTCTACCCTTCAGGCTTCCACTTGCAATTCTTCCCGCCAGGCCATCCAAGAAGGTAGATTTTCCAGCCCCACTGGGACCTAATACTGCAGTGATACTTCCTTTTGGTGAATACCCCGAAATTCTGTGCAACAAGTCTACTTCTTGCTTCACCAGTTTCCCTTCATGTTCCTTGTCTTTTAACACAGCAAACAGACACCAGGGATCACAGCACCAGCAGCACTGGTCAACAAGACAGCAGCAGCAAAGCGCAGCAAGACTGAACAATGAGACCGGAAATATTAGGCATCCCGGTCCCTGGGGAGGAGCGGCTGCATATTGTGGCGGCGCCACCACTGGAGGCGGTGGCGGCCCCTGA

Protein sequence

MASTKKERANDLLTDKPSCSIKFSTRCFFSFVGIGPSRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISMPSKETLPFRLPLAILPARPSKKVDFPAPLGPNTAVILPFGEYPEILCNKSTSCFTSFPSCSLSFNTANRHQGSQHQQHWSTRQQQQSAARLNNETGNIRHPGPWGGAAAYCGGATTGGGGGP

Homology

[Close]

BLAST of CcUC04G072200 vs. NCBI nr
Match: KAF1861186.1 (hypothetical protein Lal_00000605 [Lupinus albus])

HSP 1 Score: 84.7 bits (208), Expect = 9.5e-13
Identity = 52/109 (47.71%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 17  PSCSIKFSTRC-FFSFVGIGPSRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISM 76
           PS SI+  TR  FF F  +  +R SAA +RVS TVS GK  SSC+ YAE+   +    + 
Sbjct: 32  PSWSIRAWTRAFFFDFERLRGNRNSAAKVRVSSTVSIGKRRSSCITYAEITFRRRDSKAS 91

Query: 77  PSKETLPFRLPLAILPARPSKKVDFPAPLGPNTAVILPFGEYPEILCNK 125
           P   T+PF  PLAI  A  S  VDFP PL P TA+I P    PEI  N+
Sbjct: 92  PFSATVPFNFPLAIRFASASISVDFPEPLAPRTAIISPSRVSPEISFNR 140

[Close]

BLAST of CcUC04G072200 vs. NCBI nr
Match: KAF1879186.1 (hypothetical protein Lal_00047859 [Lupinus albus])

HSP 1 Score: 73.9 bits (180), Expect = 1.7e-09
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 38  RKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISMPSKETLPFRLPLAILPARPSKK 97
           R SAA +RVS TVS GK  SSC+ YAE+        + P   T+P   P AIL A  S  
Sbjct: 53  RNSAAKVRVSSTVSIGKRRSSCITYAEITFKSRDPNASPFSATVPLSFPFAILFASASIS 112

Query: 98  VDFPAPLGPNTAVILPFGEYPEILCNK 125
           VDFP PL P+TA+I P    PEI  NK
Sbjct: 113 VDFPEPLAPSTAMISPSRASPEISFNK 139

[Close]

BLAST of CcUC04G072200 vs. NCBI nr
Match: XP_020105768.1 (uncharacterized protein LOC109722227 [Ananas comosus])

HSP 1 Score: 55.1 bits (131), Expect = 8.1e-04
Identity = 44/104 (42.31%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 17  PSCSIKFSTRC-FFSFVGIGPSRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISM 76
           PS SI+  TR  FFS      SR SAA + VS TVS GK  SSC+ YAE+      L   
Sbjct: 55  PSWSIRARTRARFFSRGSDRGSRNSAAKVSVSSTVSMGKRRSSCITYAEMDRRSRPLTRS 114

Query: 77  PSKETLPFRLPLAILPARPSKKVDFPAPLGPNTAVILPFGEYPE 120
           P + T P R    +  A  S  VD P PL P  A I P    P+
Sbjct: 115 PFRVTDPPRRRRGMRFASASISVDLPLPLAPMIARISPSRASPD 158

[Close]

BLAST of CcUC04G072200 vs. ExPASy TrEMBL
Match: A0A6A5LIP1 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00000605 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.6e-13
Identity = 52/109 (47.71%), Postives = 63/109 (57.80%), Query Frame = 0


Query: 17  PSCSIKFSTRC-FFSFVGIGPSRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISM 76
           PS SI+  TR  FF F  +  +R SAA +RVS TVS GK  SSC+ YAE+   +    + 
Sbjct: 32  PSWSIRAWTRAFFFDFERLRGNRNSAAKVRVSSTVSIGKRRSSCITYAEITFRRRDSKAS 91

Query: 77  PSKETLPFRLPLAILPARPSKKVDFPAPLGPNTAVILPFGEYPEILCNK 125
           P   T+PF  PLAI  A  S  VDFP PL P TA+I P    PEI  N+
Sbjct: 92  PFSATVPFNFPLAIRFASASISVDFPEPLAPRTAIISPSRVSPEISFNR 140

[Close]

BLAST of CcUC04G072200 vs. ExPASy TrEMBL
Match: A0A6A5MWR6 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00047859 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 8.2e-10
Identity = 43/87 (49.43%), Postives = 50/87 (57.47%), Query Frame = 0


Query: 38  RKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISMPSKETLPFRLPLAILPARPSKK 97
           R SAA +RVS TVS GK  SSC+ YAE+        + P   T+P   P AIL A  S  
Sbjct: 53  RNSAAKVRVSSTVSIGKRRSSCITYAEITFKSRDPNASPFSATVPLSFPFAILFASASIS 112

Query: 98  VDFPAPLGPNTAVILPFGEYPEILCNK 125
           VDFP PL P+TA+I P    PEI  NK
Sbjct: 113 VDFPEPLAPSTAMISPSRASPEISFNK 139

[Close]

BLAST of CcUC04G072200 vs. ExPASy TrEMBL
Match: A0A0D9XDI0 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 6.1e-05
Identity = 34/67 (50.75%), Postives = 42/67 (62.69%), Query Frame = 0


Query: 75  MPSKETLPFRLPLAILPARPSKKVDFPAPLGPNTAVILPFGEYPEILCNKSTSCFTSFPS 134
           MPS+   P RLPLA+ PAR S+KVD PAPLGP  AV  P   +PE+  ++ TS F   PS
Sbjct: 1   MPSE---PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEMSFSRYTSFFVFTPS 60

Query: 135 CSLSFNT 142
             + F T
Sbjct: 61  FFVFFIT 64

[Close]

BLAST of CcUC04G072200 vs. ExPASy TrEMBL
Match: A0A0D9XDI1 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.0e-04
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 82  PFRLPLAILPARPSKKVDFPAPLGPNTAVILPFGEYPEILCNKSTSCFTSFPSCSLSFNT 141
           P RLPLA+ PAR S+KVD PAPLGP  AV  P   +PE+  ++ TS F   PS  + F T
Sbjct: 8   PSRLPLAMRPARASRKVDLPAPLGPRIAVTWPRSAWPEMSFSRYTSFFVFTPSFFVFFIT 67

[Close]

BLAST of CcUC04G072200 vs. ExPASy TrEMBL
Match: A0A6P5GI60 (uncharacterized protein LOC109722227 OS=Ananas comosus OX=4615 GN=LOC109722227 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 3.9e-04
Identity = 44/104 (42.31%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 17  PSCSIKFSTRC-FFSFVGIGPSRKSAANIRVSYTVSFGKSLSSCMIYAEVLLIKPGLISM 76
           PS SI+  TR  FFS      SR SAA + VS TVS GK  SSC+ YAE+      L   
Sbjct: 55  PSWSIRARTRARFFSRGSDRGSRNSAAKVSVSSTVSMGKRRSSCITYAEMDRRSRPLTRS 114

Query: 77  PSKETLPFRLPLAILPARPSKKVDFPAPLGPNTAVILPFGEYPE 120
           P + T P R    +  A  S  VD P PL P  A I P    P+
Sbjct: 115 PFRVTDPPRRRRGMRFASASISVDLPLPLAPMIARISPSRASPD 158

The following BLAST results are available for this feature:

BLAST of CcUC04G072200 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF1861186.1	9.5e-13	47.71	hypothetical protein Lal_00000605 [Lupinus albus]	[more]
KAF1879186.1	1.7e-09	49.43	hypothetical protein Lal_00047859 [Lupinus albus]	[more]
XP_020105768.1	8.1e-04	42.31	uncharacterized protein LOC109722227 [Ananas comosus]	[more]

BLAST of CcUC04G072200 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G072200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6A5LIP1	4.6e-13	47.71	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00000605 PE=4 SV=1	[more]
A0A6A5MWR6	8.2e-10	49.43	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00047859 PE=4 SV=1	[more]
A0A0D9XDI0	6.1e-05	50.75	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1	[more]
A0A0D9XDI1	1.0e-04	51.67	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=4 SV=1	[more]
A0A6P5GI60	3.9e-04	42.31	uncharacterized protein LOC109722227 OS=Ananas comosus OX=4615 GN=LOC109722227 P...	[more]

BLAST of CcUC04G072200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 146..174

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G072200.1	CcUC04G072200.1	mRNA