CcUC04G071910 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G071910
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 28572469 .. 28573506 (+)
RNA-Seq ExpressionCcUC04G071910
SyntenyCcUC04G071910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GACATCAAGCTCACATTCCACTTCTCCACATCAATTGGAATCTTCCCAAGAGCCTGAGCCGCATCAGTATGGAAGGGAACATTGAATTCCTTGCAAATTTTCCCAATTTCCTCTACTGGCTGAATGACACCAATTTCATTATTAACCGCCATAACCGAAACAAGGCCAGTGTCAGGTCTAATAGCAGAACGAAGCTCGTCCAAACCAACAATTCCATCGGACCCAACCGGTAAATAGGTAATATCAAAACCCTCCTGCTGCAAATGTCTACACGAATCAAGAACACATTTGTGCTCGGTCTGAGTAGTAATCAAGTGCCTTTTCTTCTCTCTGTAAAAGTGCATAACCCCCTTAATGGAAATGTTATTGGACTCGGTAGCTCCAGACGTAAAAACAATCTCCTTAGGCGAGGCACCAATAAGAGCAGCAACTTGGGAACGAGCCGTTTCGACGGCATGGTCCGATTCCCAACCATAGAGATGCGTACGAGAATGTGGATTACCATAACGAGAAAGATAATAAGGAAGCATGGCATCGAGCACCCGAGGATCAACAGGGGATGTAGCTTGCATATCAAGATAAAGCGGTCGCCCAGATATTTTAACACCTTTCATAGAAATCCCAGTTTCATCCTCATGGGGTTCCGACGGAGAAGCGGCAACAGCAGCAGCGGTGGAGAAGCGCGAAACGGCGGGATAGAAATTTGCGAGGGTGCGGCGTAAACTGGAAGCAAGAATCTTGGAAGCCATTGAAGGGGGTGCGGTAGCGTTGAATACAGGCTTCTTTGTGGGAGTTCGATGGTTTAAATATAAATACGATAAGGAAAAAGTTAGAGATTTGACATTAGGAGCTCTTCACTATGAAATTTAGGGCACAGCAAAATGGATCCAATTTTGGGGTCACCGACTGATGGAACCCCTTTTGCCACGTCTGTAGACACGTGGCGATTTTCTAACCGGGTGATTTATGATTCGTTGGTTTAAATATCTTACTTAACCTATATTTATATTTATTTAGCCTCAGTCCTTATCTGATTTG

mRNA sequence

GACATCAAGCTCACATTCCACTTCTCCACATCAATTGGAATCTTCCCAAGAGCCTGAGCCGCATCAGTATGGAAGGGAACATTGAATTCCTTGCAAATTTTCCCAATTTCCTCTACTGGCTGAATGACACCAATTTCATTATTAACCGCCATAACCGAAACAAGGCCAGTGTCAGGTCTAATAGCAGAACGAAGCTCGTCCAAACCAACAATTCCATCGGACCCAACCGTAATCAAGTGCCTTTTCTTCTCTCTGTAAAAGTGCATAACCCCCTTAATGGAAATGTTATTGGACTCGGTAGCTCCAGACGTAAAAACAATCTCCTTAGGCGAGGCACCAATAAGAGCAGCAACTTGGGAACGAGCCGTTTCGACGGCATGGTCCGATTCCCAACCATAGAGATGCGTACGAGAATGTGGATTACCATAACGAGAAAGATAATAAGGAAGCATGGCATCGAGCACCCGAGGATCAACAGGGGATGTAGCTTGCATATCAAGATAAAGCGGTCGCCCAGATATTTTAACACCTTTCATAGAAATCCCAGTTTCATCCTCATGGGGTTCCGACGGAGAAGCGGCAACAGCAGCAGCGGTGGAGAAGCGCGAAACGGCGGGATAGAAATTTGCGAGGGGCACAGCAAAATGGATCCAATTTTGGGGTCACCGACTGATGGAACCCCTTTTGCCACGTCTGTAGACACGTGGCGATTTTCTAACCGGCCTCAGTCCTTATCTGATTTG

Coding sequence (CDS)

ATGGAAGGGAACATTGAATTCCTTGCAAATTTTCCCAATTTCCTCTACTGGCTGAATGACACCAATTTCATTATTAACCGCCATAACCGAAACAAGGCCAGTGTCAGGTCTAATAGCAGAACGAAGCTCGTCCAAACCAACAATTCCATCGGACCCAACCGTAATCAAGTGCCTTTTCTTCTCTCTGTAAAAGTGCATAACCCCCTTAATGGAAATGTTATTGGACTCGGTAGCTCCAGACGTAAAAACAATCTCCTTAGGCGAGGCACCAATAAGAGCAGCAACTTGGGAACGAGCCGTTTCGACGGCATGGTCCGATTCCCAACCATAGAGATGCGTACGAGAATGTGGATTACCATAACGAGAAAGATAATAAGGAAGCATGGCATCGAGCACCCGAGGATCAACAGGGGATGTAGCTTGCATATCAAGATAAAGCGGTCGCCCAGATATTTTAACACCTTTCATAGAAATCCCAGTTTCATCCTCATGGGGTTCCGACGGAGAAGCGGCAACAGCAGCAGCGGTGGAGAAGCGCGAAACGGCGGGATAGAAATTTGCGAGGGGCACAGCAAAATGGATCCAATTTTGGGGTCACCGACTGATGGAACCCCTTTTGCCACGTCTGTAGACACGTGGCGATTTTCTAACCGGCCTCAGTCCTTATCTGATTTG

Protein sequence

MEGNIEFLANFPNFLYWLNDTNFIINRHNRNKASVRSNSRTKLVQTNNSIGPNRNQVPFLLSVKVHNPLNGNVIGLGSSRRKNNLLRRGTNKSSNLGTSRFDGMVRFPTIEMRTRMWITITRKIIRKHGIEHPRINRGCSLHIKIKRSPRYFNTFHRNPSFILMGFRRRSGNSSSGGEARNGGIEICEGHSKMDPILGSPTDGTPFATSVDTWRFSNRPQSLSDL
Homology
BLAST of CcUC04G071910 vs. NCBI nr
Match: PON92143.1 (hypothetical protein TorRG33x02_119620 [Trema orientale])

HSP 1 Score: 113.2 bits (282), Expect = 2.9e-21
Identity = 69/208 (33.17%), Postives = 118/208 (56.73%), Query Frame = 0

Query: 1   MEGNIEFLANFPNFLYWLNDTNFIINRHNRNKASVRSNSRTKLVQTNNSIGPNR------ 60
           M+ +IEFL +F +FL+ LN  + +++RH+RN+A    N R +L++ + +IG +R      
Sbjct: 1   MKRDIEFLTDFADFLHRLNHADLVVDRHDRNQARSGPNRRPELLEVHEAIGADREVRDLE 60

Query: 61  --------------------NQVPFLLSVKVHNPLNGNVIGLGSSRRKNNLLRRGTNKSS 120
                               + V  LL V+VH+ L+G+V+ LG +  +++LLRR  ++  
Sbjct: 61  TLLLEMATGVEDALVLGLGGDHVALLLLVEVHDALDGDVVALGGAGGEDDLLRRRADEIG 120

Query: 121 NLGTSRFDGMVRFPTIEMRTRMWITITRKIIRKHGIEHPRINRGCSLHIKIKRSPRYFNT 180
           +LG      +VR P + +   + +++   I  +HG+E+PR++R   LHI+I+RSP   + 
Sbjct: 121 HLGARGLHRLVRLPPVHVGPGVRVSVLGHIKGQHGVENPRVDRRRGLHIQIERSPGDSHP 180

Query: 181 FHRNPSFILMGFRRRSGNSSSGGEARNG 183
           FH +P ++L GFRRR    S+GG  R G
Sbjct: 181 FHCDPIWVLKGFRRR----SNGGRRRGG 204

BLAST of CcUC04G071910 vs. NCBI nr
Match: PON35628.1 (LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_334680 [Parasponia andersonii])

HSP 1 Score: 109.8 bits (273), Expect = 3.2e-20
Identity = 67/203 (33.00%), Postives = 116/203 (57.14%), Query Frame = 0

Query: 1   MEGNIEFLANFPNFLYWLNDTNFIINRHNRNKASVRSNSRTKLVQTNNSIGPNR------ 60
           ME +IEFLA+F +FL+ LN  + +++ H+RN+A +  N R +L++ + +I  +R      
Sbjct: 1   MERDIEFLADFADFLHGLNHADLVVDHHDRNQARIGPNRRPELLEVHEAIRADREVRDLK 60

Query: 61  --------------------NQVPFLLSVKVHNPLNGNVIGLGSSRRKNNLLRRGTNKSS 120
                               + V  LL V+VH+ L+G+V+ LG +  +++LLRR  ++  
Sbjct: 61  TLLLEMATGVEYALVLGLGGDHVALLLLVEVHDALDGDVVALGGAGGEDDLLRR-ADEIG 120

Query: 121 NLGTSRFDGMVRFPTIEMRTRMWITITRKIIRKHGIEHPRINRGCSLHIKIKRSPRYFNT 178
           +LG      +VR P + +   + +++   I  +HG+E+PR++R   LHI+I+RSP   + 
Sbjct: 121 HLGARGLRRLVRLPPVHVGPGVRVSVLGHIKGQHGVENPRVHRRRGLHIQIERSPGDSHP 180

BLAST of CcUC04G071910 vs. NCBI nr
Match: EDZ73557.1 (hypothetical protein AWRI1631_30480 [Saccharomyces cerevisiae AWRI1631])

HSP 1 Score: 55.1 bits (131), Expect = 9.3e-04
Identity = 46/171 (26.90%), Postives = 80/171 (46.78%), Query Frame = 0

Query: 1   MEGNIEFLANFPNFLYWLNDTNFIINRHNRNKASVRSNSRTKLVQTNNSI---------- 60
           M+ ++    N  NF   L+DT+FII+ H+R++  + SN   + +Q + ++          
Sbjct: 1   MKVDLILSTNCTNFFNRLDDTDFIIDSHHRDETGIWSNGIFQFLQIDKTLIVHIQESDFK 60

Query: 61  -----GP-----------NRNQVPFLLSVKVHNPLNGNVIGLGSSRRKNNLLRRGTNKSS 120
                GP           + + V   L +K  + L  ++I  G SR +   L  G +   
Sbjct: 61  SLLHHGPCGFQDTLVFRSSGDDVFLSLLIKSWDTLKNHIIRFGRSRSEYYFLGVGIDHLC 120

Query: 121 NLGTSRFDGMVRFPTIEMRTRMWITITRKIIRKHGIEHPRINRGCSLHIKI 146
            +G+S F   + FPT+ +   M ITI  +I  +H I++PR+     LH+KI
Sbjct: 121 YVGSSIFHSSICFPTVRVSVGMRITIKSRIKLQHRIQNPRVCWCSGLHVKI 171

BLAST of CcUC04G071910 vs. ExPASy TrEMBL
Match: A0A2P5F2X1 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_119620 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.4e-21
Identity = 69/208 (33.17%), Postives = 118/208 (56.73%), Query Frame = 0

Query: 1   MEGNIEFLANFPNFLYWLNDTNFIINRHNRNKASVRSNSRTKLVQTNNSIGPNR------ 60
           M+ +IEFL +F +FL+ LN  + +++RH+RN+A    N R +L++ + +IG +R      
Sbjct: 1   MKRDIEFLTDFADFLHRLNHADLVVDRHDRNQARSGPNRRPELLEVHEAIGADREVRDLE 60

Query: 61  --------------------NQVPFLLSVKVHNPLNGNVIGLGSSRRKNNLLRRGTNKSS 120
                               + V  LL V+VH+ L+G+V+ LG +  +++LLRR  ++  
Sbjct: 61  TLLLEMATGVEDALVLGLGGDHVALLLLVEVHDALDGDVVALGGAGGEDDLLRRRADEIG 120

Query: 121 NLGTSRFDGMVRFPTIEMRTRMWITITRKIIRKHGIEHPRINRGCSLHIKIKRSPRYFNT 180
           +LG      +VR P + +   + +++   I  +HG+E+PR++R   LHI+I+RSP   + 
Sbjct: 121 HLGARGLHRLVRLPPVHVGPGVRVSVLGHIKGQHGVENPRVDRRRGLHIQIERSPGDSHP 180

Query: 181 FHRNPSFILMGFRRRSGNSSSGGEARNG 183
           FH +P ++L GFRRR    S+GG  R G
Sbjct: 181 FHCDPIWVLKGFRRR----SNGGRRRGG 204

BLAST of CcUC04G071910 vs. ExPASy TrEMBL
Match: A0A2P5AGF7 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_334680 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 67/203 (33.00%), Postives = 116/203 (57.14%), Query Frame = 0

Query: 1   MEGNIEFLANFPNFLYWLNDTNFIINRHNRNKASVRSNSRTKLVQTNNSIGPNR------ 60
           ME +IEFLA+F +FL+ LN  + +++ H+RN+A +  N R +L++ + +I  +R      
Sbjct: 1   MERDIEFLADFADFLHGLNHADLVVDHHDRNQARIGPNRRPELLEVHEAIRADREVRDLK 60

Query: 61  --------------------NQVPFLLSVKVHNPLNGNVIGLGSSRRKNNLLRRGTNKSS 120
                               + V  LL V+VH+ L+G+V+ LG +  +++LLRR  ++  
Sbjct: 61  TLLLEMATGVEYALVLGLGGDHVALLLLVEVHDALDGDVVALGGAGGEDDLLRR-ADEIG 120

Query: 121 NLGTSRFDGMVRFPTIEMRTRMWITITRKIIRKHGIEHPRINRGCSLHIKIKRSPRYFNT 178
           +LG      +VR P + +   + +++   I  +HG+E+PR++R   LHI+I+RSP   + 
Sbjct: 121 HLGARGLRRLVRLPPVHVGPGVRVSVLGHIKGQHGVENPRVHRRRGLHIQIERSPGDSHP 180

BLAST of CcUC04G071910 vs. ExPASy TrEMBL
Match: B5VET8 (Uncharacterized protein OS=Saccharomyces cerevisiae (strain AWRI1631) OX=545124 GN=AWRI1631_30480 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 4.5e-04
Identity = 46/171 (26.90%), Postives = 80/171 (46.78%), Query Frame = 0

Query: 1   MEGNIEFLANFPNFLYWLNDTNFIINRHNRNKASVRSNSRTKLVQTNNSI---------- 60
           M+ ++    N  NF   L+DT+FII+ H+R++  + SN   + +Q + ++          
Sbjct: 1   MKVDLILSTNCTNFFNRLDDTDFIIDSHHRDETGIWSNGIFQFLQIDKTLIVHIQESDFK 60

Query: 61  -----GP-----------NRNQVPFLLSVKVHNPLNGNVIGLGSSRRKNNLLRRGTNKSS 120
                GP           + + V   L +K  + L  ++I  G SR +   L  G +   
Sbjct: 61  SLLHHGPCGFQDTLVFRSSGDDVFLSLLIKSWDTLKNHIIRFGRSRSEYYFLGVGIDHLC 120

Query: 121 NLGTSRFDGMVRFPTIEMRTRMWITITRKIIRKHGIEHPRINRGCSLHIKI 146
            +G+S F   + FPT+ +   M ITI  +I  +H I++PR+     LH+KI
Sbjct: 121 YVGSSIFHSSICFPTVRVSVGMRITIKSRIKLQHRIQNPRVCWCSGLHVKI 171

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON92143.12.9e-2133.17hypothetical protein TorRG33x02_119620 [Trema orientale][more]
PON35628.13.2e-2033.00LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_334680 [Parasponia anderson... [more]
EDZ73557.19.3e-0426.90hypothetical protein AWRI1631_30480 [Saccharomyces cerevisiae AWRI1631][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5F2X11.4e-2133.17Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_119620 PE=4 SV... [more]
A0A2P5AGF71.5e-2033.00Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_334680 PE... [more]
B5VET84.5e-0426.90Uncharacterized protein OS=Saccharomyces cerevisiae (strain AWRI1631) OX=545124 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G071910.1CcUC04G071910.1mRNA