CcUC04G070460 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G070460
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionRPW8 domain-containing protein
LocationCicolChr04: 27238037 .. 27241040 (+)
RNA-Seq ExpressionCcUC04G070460
SyntenyCcUC04G070460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGTTATTAAAAAGAAAAGAATTTGTAATATGTATGATATAGGGAAAATGAAGTGTTGATTGAATAAGGTGAAGAAGAAACATTAATTTGATAGATGAGAGACATGTGAGATGTCGGAGGGGCAGTGGTTCGGTAGGTAATGTAAATAAATTATGGTTCCCCACACGGTTTGGTTTGGCTGTTTGTCTCCTCCTATCAAACGACGCACCAATCACTAACTATATTTAAATCTTTGATTCCAAAATCAAACACTTTTTAATTACCTTCAATCCCACCATATCTCTATATCCTCAATCAACCTATTTTTCTTCATATTTTATTCCATTTTTAGTATTATCACTCCTCACATTCTTATTCTTATTTTGGTACCTCATTAAATAATATATTAATATATTTTATGAACCTAACATCATATTTAAATGTTACTTGGCACGTAATGAGTGCAGTATGACAATTTTTTCATATCTACCATATTACTATATGGTAAAAATTGTTTTCATGTTCGTATTTAGTTTTTAGTTGATCTTTTAGTTTTTATTGAATTTTATTTCCCTTTAATCTTAGATTTTGGGAGTTAATGAGTCGATTTGAAATGATGATTAGTTTAATTTTGGATATTATTTCATAAAAGATTTAAATTTTTTGAAAGATATAGAGTTTAAGAAGGAAGAGAAAATTTGACTTTTATTAATCAATTCTAGATTTATATACATTAGATAAGTAAATTGTCATATTTGTTGTAACTTTAAGCTATATATTCGTAAATAATCAACCTTATTTTACCGTTTATTATAATTGTCTTTTTTAAAAAATTTATTTTAGGACTGATTTCAAATATAGAAAAATGAATCAAAATAATTACAAATATAGCAAAATTCCACCAATCGCGGTAGACCATGATATTTTGCGATCTATTTCGTGTTATCGCAGATAAACTGTGATATTTTGTTATTGTTTGTAAATATCGCAAATAATTTCCTTAATTTTAATAGTGATGAAAATTTGTGAAAACTAACTTAATTTTTTAAAATTAATTATTAGATATTAATATAATATAGAATGGCCAAAAGTGAGTATTAAAGGTAGTAAAAGTGTAAATCTTGAATCTTAAAAATATTAAATGAAAAGTAAACTCAAGAATAATGCATAAAAATGTCACATTTTGAAACTATAGATTAAATAAAAATTAAACTTAAAACTTAAAGTCAAAAGTAAAACATTTTGAAATGTAAAAATGAAATGAAAAATAAACTTAAAGCAATTGAATTTTGGAAACAAGAAACGGGGTAAATCATCAAGGCCTTATTTAGTAAAAAAAAGAAAAAAAAAAAAAAGTAGTGAAGGAATATACCGAATTCGTTGTACTTTGATCCTTTCAGAAGAGATAAGATTAAGGTTGAAAATGTGTTTTCCATCGTTGTTTCTAATGGAATTTTTTTTTTTTGTCCTCATTCCATACAAATTTCTTGATATTGGAGTATTGGCATAAGCTCAAGGAATTTTTTATTATGTTTATTATCGTCTCCCAATAATTATTAGATATAAATTCAAATATTTAGTCAAATAATTCCTTACTTAAAACCCCGTAATTTTAAGTTCGATGAATATCTCCATTCAAAATAAATAAATAATGAAAAAATAAAGAGGTTAAGTTATATAAAAGGTAAAGTTATTTAAATGTTTCATGGTTACCCTCGACATCATTTTTTCATTTACAGTGACATTTGATTTTTAAATATTGTTGATGATCTAAATGATTTTAATGATATTTTTTTTTTTTATAGAGATCACATAAATAAAATAGAACAACAACCATCGTGAGTGAGTTGGTCTAGTGGTAGTGGGAATATTAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAGTCTAATATCTTACGAATTTTCTTGACAGTCAAATGTCAATAAGTTAGTCCAGACACTCACGAATATAAAAATAAAAAATAAAAACAATCTTAAATTGAATCAGTATTAAATCTTAAATTTAAAATTGGGAAGTATTTTGTTGGAACAAATATCAAAATTGAATGGTAAAAAATTAATTAAGTAGGTTTCAAAGTGATTAAAAAAAAACGTATAATTAATTAAAGCCTACCCCAGTTGAGAGTATTTTGTCTAATTCTAAAAATAAAAAATAAAATAAAAGAAGAAGAAGGAAAATGGGGAGAAGAAAGGATAAGGGTTGATGGGAAATTAGGGGAAAACCGCGTCAACCAACCGGTAGAGTGAAGAGTGTTTGTGTAGAGGTAGTTAAGTTACTATTTAATTATTTTGTTGATTTGAATAACAATTAAGAAGGAATTAATGTAATATGGAGGGGGGAAATGGTAGCCGGAGCAGGTTGGAATTTGATGGAAAAAGCCATTCACTTCAAGCCTGTGCTTCAAGAAATCACGTCCCAGTTACTATTTTTGGTATCATTGATGAAGCAGTTGGATGAACTTGGAATTGACTTCCAACCAACACACTCGATATTTGAGGGAACTCATTCGTAGTGGGAAACAACTCATACTCAAGTCCCACGATGCTGTCAAACGCTACTCTTTTCTTTACTATCCCAAGACCCCATTTTACACCAAGAAGCTTCGGAAGTTGGATGCTCGACTTGAAAGGGCCTCACGCAATTTGTTGTTGCAATTGAATGTACAACAAATGAACAAATTATTGGCTTTGAAAAATAATGATAAGAGTTGTGATGGGCATGCTGGATTGGCAGACAAGATCAAGAAAATATTTATGGGGTATTCTAAAACTTACTGCACTTCAAACTCTCAGTAATTACGTCGAGAATTATCAAACAACCAAGCTTCCCTTACTGTTTCACCACGACAAGCGACTCAAAGGTAAATAAATCAAAGAACAACACTAATTAAGTTGATTAATTCAAATTTTATTTTCTTGACGCAGGCCTAATCTCCTGGGAAGGGTTGTAGAACACATTAAGGTCGACCCAAAGGAA

mRNA sequence

ATGATAAGAAACATTAATTTGATAGATGAGAGACATGTGAGATGTCGGAGGGGCAGTGGTTCGGTAGGTAATGTAAATAAATTATGGTTCCCCACACGAGATCACATAAATAAAATAGAACAACAACCATCTTGGATGAACTTGGAATTGACTTCCAACCAACACACTCGATATTTGAGGGAACTCATTCGTAGTGGGAAACAACTCATACTCAAGTCCCACGATGCTGTCAAACGCTACTCTTTTCTTTACTATCCCAAGACCCCATTTTACACCAAGAAGCTTCGGAAGTTGGATGCTCGACTTGAAAGGGCCTCACGCAATTTGTTGTTGCAATTGAATGTACAACAAATGAACAAATTATTGGCTTTGAAAAATAATGATAAGAGTTGTGATGGGCATGCTGGATTGGCAGACAAGATCAAGAAAATATTTATGGGGCCTAATCTCCTGGGAAGGGTTGTAGAACACATTAAGGTCGACCCAAAGGAA

Coding sequence (CDS)

ATGATAAGAAACATTAATTTGATAGATGAGAGACATGTGAGATGTCGGAGGGGCAGTGGTTCGGTAGGTAATGTAAATAAATTATGGTTCCCCACACGAGATCACATAAATAAAATAGAACAACAACCATCTTGGATGAACTTGGAATTGACTTCCAACCAACACACTCGATATTTGAGGGAACTCATTCGTAGTGGGAAACAACTCATACTCAAGTCCCACGATGCTGTCAAACGCTACTCTTTTCTTTACTATCCCAAGACCCCATTTTACACCAAGAAGCTTCGGAAGTTGGATGCTCGACTTGAAAGGGCCTCACGCAATTTGTTGTTGCAATTGAATGTACAACAAATGAACAAATTATTGGCTTTGAAAAATAATGATAAGAGTTGTGATGGGCATGCTGGATTGGCAGACAAGATCAAGAAAATATTTATGGGGCCTAATCTCCTGGGAAGGGTTGTAGAACACATTAAGGTCGACCCAAAGGAA

Protein sequence

MIRNINLIDERHVRCRRGSGSVGNVNKLWFPTRDHINKIEQQPSWMNLELTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNLLLQLNVQQMNKLLALKNNDKSCDGHAGLADKIKKIFMGPNLLGRVVEHIKVDPKE
Homology
[Close]
BLAST of CcUC04G070460 vs. NCBI nr
Match: XP_022949782.1 (uncharacterized protein LOC111453073 isoform X1 [Cucurbita moschata])

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-10
Identity = 61/143 (42.66%), Postives = 75/143 (52.45%), Query Frame = 0 

Query: 50  LTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNL 109
           L S ++TR LR +I  GK+LI K     +  S L Y K PFYTKKLR+LDA   RAS+NL
Sbjct: 61  LDSAENTRSLRGVIEKGKKLIGKCEGVDQ--SILNYHKAPFYTKKLRQLDAEFGRASQNL 120

Query: 110 LLQLNVQQM------------NKLLALKNNDK------SCDGHAGLADKIKKIFM----- 160
           LLQLN+QQ+            +KLL  K  +K       C     L ++IK  F+     
Sbjct: 121 LLQLNLQQLRRISMNGNGSDSSKLLLQKTMEKVMSFGCCCSVFGDLPNQIKLPFLFYHNK 180

[Close]
BLAST of CcUC04G070460 vs. NCBI nr
Match: XP_022949783.1 (uncharacterized protein LOC111453073 isoform X2 [Cucurbita moschata])

HSP 1 Score: 74.7 bits (182), Expect = 8.2e-10
Identity = 61/143 (42.66%), Postives = 75/143 (52.45%), Query Frame = 0 

Query: 50  LTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNL 109
           L S ++TR LR +I  GK+LI K     +  S L Y K PFYTKKLR+LDA   RAS+NL
Sbjct: 61  LDSAENTRSLRGVIEKGKKLIGKCEGVDQ--SILNYHKAPFYTKKLRQLDAEFGRASQNL 120

Query: 110 LLQLNVQQM------------NKLLALKNNDK------SCDGHAGLADKIKKIFM----- 160
           LLQLN+QQ+            +KLL  K  +K       C     L ++IK  F+     
Sbjct: 121 LLQLNLQQLRRISMNGNGSDSSKLLLQKTMEKVMSFGCCCSVFGDLPNQIKLPFLFYHNK 180

[Close]
BLAST of CcUC04G070460 vs. NCBI nr
Match: KAG7034359.1 (putative GEM-like protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-09
Identity = 51/110 (46.36%), Postives = 64/110 (58.18%), Query Frame = 0 

Query: 50  LTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNL 109
           L S ++TR LR +I  GK+LI K     +  S L Y K PFYTKKLR+LDA   RAS+NL
Sbjct: 61  LDSAENTRSLRGVIEKGKKLIGKCEGVDQ--SILNYHKAPFYTKKLRQLDAEFGRASQNL 120

Query: 110 LLQLNVQQMNKLLALKNNDKSCDGHAGLADKIKKIFMGPNLLGRVVEHIK 160
           LLQ+NVQQ+ ++        S +G  G          G  +LG VVEHIK
Sbjct: 121 LLQMNVQQLRRI--------SMNGKTGPN-------FGDEMLGWVVEHIK 153

[Close]
BLAST of CcUC04G070460 vs. NCBI nr
Match: XP_023544701.1 (uncharacterized protein LOC111804208 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-09
Identity = 57/137 (41.61%), Postives = 71/137 (51.82%), Query Frame = 0 

Query: 50  LTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNL 109
           L S ++TR LR +I  GK+LI K     +  S L Y K PFYTKKLR+LDA   RAS+NL
Sbjct: 61  LASAENTRSLRGVIEKGKKLIGKCEGVDQ--SILNYHKAPFYTKKLRQLDAEFGRASQNL 120

Query: 110 LLQLNVQQMNKLLALKNNDKS------------CDGHAGLADKIK-----------KIFM 160
           LLQ+NVQQ+ ++    N   S            C     L ++IK           K   
Sbjct: 121 LLQMNVQQLRRISMNGNGSGSSVLLKVMSFGCCCSVFGDLPNQIKLPLVFYHNKQLKGKT 180

[Close]
BLAST of CcUC04G070460 vs. NCBI nr
Match: XP_023544702.1 (uncharacterized protein LOC111804208 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.8 bits (177), Expect = 3.1e-09
Identity = 57/137 (41.61%), Postives = 71/137 (51.82%), Query Frame = 0 

Query: 50  LTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNL 109
           L S ++TR LR +I  GK+LI K     +  S L Y K PFYTKKLR+LDA   RAS+NL
Sbjct: 61  LASAENTRSLRGVIEKGKKLIGKCEGVDQ--SILNYHKAPFYTKKLRQLDAEFGRASQNL 120

Query: 110 LLQLNVQQMNKLLALKNNDKS------------CDGHAGLADKIK-----------KIFM 160
           LLQ+NVQQ+ ++    N   S            C     L ++IK           K   
Sbjct: 121 LLQMNVQQLRRISMNGNGSGSSVLLKVMSFGCCCSVFGDLPNQIKLPLVFYHNKQLKGKT 180

[Close]
BLAST of CcUC04G070460 vs. ExPASy TrEMBL
Match: A0A6J1GD27 (uncharacterized protein LOC111453073 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453073 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 61/143 (42.66%), Postives = 75/143 (52.45%), Query Frame = 0 

Query: 50  LTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNL 109
           L S ++TR LR +I  GK+LI K     +  S L Y K PFYTKKLR+LDA   RAS+NL
Sbjct: 61  LDSAENTRSLRGVIEKGKKLIGKCEGVDQ--SILNYHKAPFYTKKLRQLDAEFGRASQNL 120

Query: 110 LLQLNVQQM------------NKLLALKNNDK------SCDGHAGLADKIKKIFM----- 160
           LLQLN+QQ+            +KLL  K  +K       C     L ++IK  F+     
Sbjct: 121 LLQLNLQQLRRISMNGNGSDSSKLLLQKTMEKVMSFGCCCSVFGDLPNQIKLPFLFYHNK 180

[Close]
BLAST of CcUC04G070460 vs. ExPASy TrEMBL
Match: A0A6J1GD24 (uncharacterized protein LOC111453073 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111453073 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.0e-10
Identity = 61/143 (42.66%), Postives = 75/143 (52.45%), Query Frame = 0 

Query: 50  LTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKLRKLDARLERASRNL 109
           L S ++TR LR +I  GK+LI K     +  S L Y K PFYTKKLR+LDA   RAS+NL
Sbjct: 61  LDSAENTRSLRGVIEKGKKLIGKCEGVDQ--SILNYHKAPFYTKKLRQLDAEFGRASQNL 120

Query: 110 LLQLNVQQM------------NKLLALKNNDK------SCDGHAGLADKIKKIFM----- 160
           LLQLN+QQ+            +KLL  K  +K       C     L ++IK  F+     
Sbjct: 121 LLQLNLQQLRRISMNGNGSDSSKLLLQKTMEKVMSFGCCCSVFGDLPNQIKLPFLFYHNK 180

[Close]
BLAST of CcUC04G070460 vs. ExPASy TrEMBL
Match: A0A6J1BU73 (uncharacterized protein LOC111005737 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005737 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.4e-08
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 0 

Query: 36  INKIEQQPSWMNLELTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKL 95
           + K+ +Q   ++  L   ++T+YL +L+  GKQLI+K          + Y K PFYT KL
Sbjct: 45  LGKVMEQLDGISDFLDDPKNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKL 104

Query: 96  RKLDARLERASRNLLLQLNVQQMNKLLALKNNDK--SCDGHAGLA---DKIKKIF----- 155
           R LDARL+ A+  L L+L  QQ     A+ N  +  SC  H   A    K+  +F     
Sbjct: 105 RHLDARLKTATELLDLRLREQQ-----AMDNTHRRHSCANHHASAPTHTKLPLVFCHDKR 164

Query: 156 ----MGPN----LLGRVVEHIKVDPKE 165
               +GPN    L+G+V+E+ K DP+E
Sbjct: 165 ISGKIGPNLAETLVGKVLEYTKGDPQE 186

[Close]
BLAST of CcUC04G070460 vs. ExPASy TrEMBL
Match: A0A6J1BTX8 (uncharacterized protein LOC111005737 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005737 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 6.4e-08
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 0 

Query: 36  INKIEQQPSWMNLELTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPFYTKKL 95
           + K+ +Q   ++  L   ++T+YL +L+  GKQLI+K          + Y K PFYT KL
Sbjct: 45  LGKVMEQLDGISDFLDDPKNTKYLSKLLGQGKQLIIKCEGVKGNTILIKYFKAPFYTTKL 104

Query: 96  RKLDARLERASRNLLLQLNVQQMNKLLALKNNDK--SCDGHAGLA---DKIKKIF----- 155
           R LDARL+ A+  L L+L  QQ     A+ N  +  SC  H   A    K+  +F     
Sbjct: 105 RHLDARLKTATELLDLRLREQQ-----AMDNTHRRHSCANHHASAPTHTKLPLVFCHDKR 164

Query: 156 ----MGPN----LLGRVVEHIKVDPKE 165
               +GPN    L+G+V+E+ K DP+E
Sbjct: 165 ISGKIGPNLAETLVGKVLEYTKGDPQE 186

[Close]
BLAST of CcUC04G070460 vs. ExPASy TrEMBL
Match: A0A1S3B0M1 (uncharacterized protein LOC103484755 OS=Cucumis melo OX=3656 GN=LOC103484755 PE=3 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 59/174 (33.91%), Postives = 81/174 (46.55%), Query Frame = 0 

Query: 31  PTRDHINKIEQQPSWMNLELTSNQHTRYLRELIRSGKQLILKSHDAVKRYSFLYYPKTPF 90
           P  D ++++ +     + +L  +  T  L+ LI  GKQLI + +    + +   Y K P 
Sbjct: 49  PLMDQVDELGE-----DFKLRYSDQTLKLKILINKGKQLIEECNYVAIQSTLSRYSKIPR 108

Query: 91  YTKKLRKLDARLERASRNLLLQLNVQQMNKLLALKNN----------------------D 150
           YTKKLR+LDA L+RA  NL L+L VQQM KL AL+NN                      D
Sbjct: 109 YTKKLRRLDAELKRAESNLRLELCVQQM-KLQALENNYNNGGRRGRIRDRAKLFVTNILD 168

Query: 151 KSCDGHAGLADKIKKIFM--------------GPN----LLGRVVEHIKVDPKE 165
               G +G+ +   KI +              G N     +GR VEHIK DPKE
Sbjct: 169 NLFRGESGINNNEYKIKLPLLFYHDRRLKGKAGANFVDAFVGRAVEHIKDDPKE 216

The following BLAST results are available for this feature:
BLAST of CcUC04G070460 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022949782.18.2e-1042.66uncharacterized protein LOC111453073 isoform X1 [Cucurbita moschata][more]
XP_022949783.18.2e-1042.66uncharacterized protein LOC111453073 isoform X2 [Cucurbita moschata][more]
KAG7034359.11.1e-0946.36putative GEM-like protein 3, partial [Cucurbita argyrosperma subsp. argyrosperma... [more]
XP_023544701.13.1e-0941.61uncharacterized protein LOC111804208 isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_023544702.13.1e-0941.61uncharacterized protein LOC111804208 isoform X2 [Cucurbita pepo subsp. pepo][more]
BLAST of CcUC04G070460 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G070460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1GD274.0e-1042.66uncharacterized protein LOC111453073 isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1GD244.0e-1042.66uncharacterized protein LOC111453073 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1BU736.4e-0835.37uncharacterized protein LOC111005737 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1BTX86.4e-0835.37uncharacterized protein LOC111005737 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A1S3B0M11.1e-0733.91uncharacterized protein LOC103484755 OS=Cucumis melo OX=3656 GN=LOC103484755 PE=... [more]
BLAST of CcUC04G070460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G070460.1CcUC04G070460.1mRNA