CcUC04G069620 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G069620
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Encodes a root meristem growth factor, Belongs to a family of functionally redundant ous peptides that are secreted, putative
Location	CicolChr04: 26365577 .. 26365972 (-)
RNA-Seq Expression	CcUC04G069620
Synteny	CcUC04G069620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGAATTGCAGATTACTTGTGTTTGTGGCTTTGCTTCTGCTACATTTTGCTTCAACCACAGCAACAGGTAAGGTAAAAAATCATCTCACCAATTTCTTGGGGTTGTTGCTGTCTTATAGTAGTTTTCCATCTCTAAGAGTCTTGAACAAATATCTTTGACTGTCTAAATACTTCAAAATAGTAATGTTTTTAAGCACTAATGTTTTTAAGCACTTAAAAGGTCATTCTAGCTGAGGAAGAAATATGAGAGGTTTGTTAATGAAAGAAGCAGAAGAGAGGCCAAAAGATCTTATAGTGCATAAAAATAAAGGGAAGAAGAAGCAAAGCAGCGATGAGTTGGTGGCAATGGATTACAATCCTGCTTCAAGGAGACCTCCAATCCACAACTAA

mRNA sequence

ATGGCTATGAATTGCAGATTACTTGTGTTTGTGGCTTTGCTTCTGCTACATTTTGCTTCAACCACAGCAACAGGAAGAAATATGAGAGGTTTGTTAATGAAAGAAGCAGAAGAGAGGCCAAAAGATCTTATAGTGCATAAAAATAAAGGGAAGAAGAAGCAAAGCAGCGATGAGTTGGTGGCAATGGATTACAATCCTGCTTCAAGGAGACCTCCAATCCACAACTAA

Coding sequence (CDS)

ATGGCTATGAATTGCAGATTACTTGTGTTTGTGGCTTTGCTTCTGCTACATTTTGCTTCAACCACAGCAACAGGAAGAAATATGAGAGGTTTGTTAATGAAAGAAGCAGAAGAGAGGCCAAAAGATCTTATAGTGCATAAAAATAAAGGGAAGAAGAAGCAAAGCAGCGATGAGTTGGTGGCAATGGATTACAATCCTGCTTCAAGGAGACCTCCAATCCACAACTAA

Protein sequence

MAMNCRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDYNPASRRPPIHN

Homology

[Close]

BLAST of CcUC04G069620 vs. NCBI nr
Match: KAG6604255.1 (hypothetical protein SDJN03_04864, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.2 bits (256), Expect = 9.9e-19
Identity = 51/75 (68.00%), Postives = 61/75 (81.33%), Query Frame = 0


Query: 1  MAMNCRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELV 60
          MA+NCR LVFVAL LL FASTT TGR+MR + M+E +ERP+DL+VH NK KK + SD+LV
Sbjct: 1  MAVNCRFLVFVALFLLCFASTTVTGRSMRVVFMEEGDERPEDLLVHTNKDKKMEGSDQLV 60

Query: 61 AMDYNPASRRPPIHN 76
           MDY PA +RPPIHN
Sbjct: 61 VMDYTPALKRPPIHN 75

[Close]

BLAST of CcUC04G069620 vs. NCBI nr
Match: MBA0677939.1 (hypothetical protein [Gossypium aridum])

HSP 1 Score: 57.0 bits (136), Expect = 8.1e-05
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          C+ L+  A  L  F STTAT RN+      +     ++L   K+ G+   S DELV+MDY
Sbjct: 6  CKHLILAAFFLFFFISTTATARNLPVAKETQKHHDHQELTSTKDHGEPNISVDELVSMDY 65

Query: 65 NPASRRPPIHN 76
           PA+R+PPIHN
Sbjct: 66 TPATRKPPIHN 76

[Close]

BLAST of CcUC04G069620 vs. NCBI nr
Match: MBA0761107.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 57.0 bits (136), Expect = 8.1e-05
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          C+ L+  A  L  F STTAT RN+      +     ++L   K+ G+   S DELV+MDY
Sbjct: 6  CKHLILAAFFLFFFISTTATARNLPEAKETQKPHDHQELTSTKDHGEPNISVDELVSMDY 65

Query: 65 NPASRRPPIHN 76
           PA+R+PPIHN
Sbjct: 66 TPATRKPPIHN 76

[Close]

BLAST of CcUC04G069620 vs. NCBI nr
Match: KJB18361.1 (hypothetical protein B456_003G048600 [Gossypium raimondii] >MBA0608535.1 hypothetical protein [Gossypium davidsonii] >MBA0643568.1 hypothetical protein [Gossypium klotzschianum] >MBA0794047.1 hypothetical protein [Gossypium harknessii] >MBA0824597.1 hypothetical protein [Gossypium armourianum])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          C+ L+  A  L  F STTAT RN+      +     ++L   K+ G+   S DELV+MDY
Sbjct: 6  CKHLILAAFFLFFFISTTATARNLPVAKETQKPHDHQELTSTKDHGEPNISVDELVSMDY 65

Query: 65 NPASRRPPIHN 76
           PA+R+PPIHN
Sbjct: 66 TPATRKPPIHN 76

[Close]

BLAST of CcUC04G069620 vs. NCBI nr
Match: KAA8546932.1 (hypothetical protein F0562_003361 [Nyssa sinensis])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          CR LV VA LLL F   TA  R++R  +     E+  D+ + K  G    +++ELVAMDY
Sbjct: 6  CRRLVLVAFLLLCFIFITARARSLRTDI--NGAEKGHDMFIPKEDGVPDSTTEELVAMDY 65

Query: 65 NPASRRPPIHN 76
           PA+++PPIHN
Sbjct: 66 TPATKKPPIHN 74

[Close]

BLAST of CcUC04G069620 vs. ExPASy TrEMBL
Match: A0A7J9DK90 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_023796 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          C+ L+  A  L  F STTAT RN+      +     ++L   K+ G+   S DELV+MDY
Sbjct: 6  CKHLILAAFFLFFFISTTATARNLPEAKETQKPHDHQELTSTKDHGEPNISVDELVSMDY 65

Query: 65 NPASRRPPIHN 76
           PA+R+PPIHN
Sbjct: 66 TPATRKPPIHN 76

[Close]

BLAST of CcUC04G069620 vs. ExPASy TrEMBL
Match: A0A7J8WTP6 (Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_019312 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 3.9e-05
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          C+ L+  A  L  F STTAT RN+      +     ++L   K+ G+   S DELV+MDY
Sbjct: 6  CKHLILAAFFLFFFISTTATARNLPVAKETQKHHDHQELTSTKDHGEPNISVDELVSMDY 65

Query: 65 NPASRRPPIHN 76
           PA+R+PPIHN
Sbjct: 66 TPATRKPPIHN 76

[Close]

BLAST of CcUC04G069620 vs. ExPASy TrEMBL
Match: A0A0D2QNE0 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G048600 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          C+ L+  A  L  F STTAT RN+      +     ++L   K+ G+   S DELV+MDY
Sbjct: 6  CKHLILAAFFLFFFISTTATARNLPVAKETQKPHDHQELTSTKDHGEPNISVDELVSMDY 65

Query: 65 NPASRRPPIHN 76
           PA+R+PPIHN
Sbjct: 66 TPATRKPPIHN 76

[Close]

BLAST of CcUC04G069620 vs. ExPASy TrEMBL
Match: A0A7J9IR72 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_021254 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 31/71 (43.66%), Postives = 42/71 (59.15%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          C+ L+  A  L  F STTAT RN+      +     ++L   K+ G+   S DELV+MDY
Sbjct: 6  CKHLILAAFFLFFFISTTATARNLPVAKETQKPHDHQELTSTKDHGEPNISVDELVSMDY 65

Query: 65 NPASRRPPIHN 76
           PA+R+PPIHN
Sbjct: 66 TPATRKPPIHN 76

[Close]

BLAST of CcUC04G069620 vs. ExPASy TrEMBL
Match: A0A5J5BZ75 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_003361 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.1e-05
Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 0


Query: 5  CRLLVFVALLLLHFASTTATGRNMRGLLMKEAEERPKDLIVHKNKGKKKQSSDELVAMDY 64
          CR LV VA LLL F   TA  R++R  +     E+  D+ + K  G    +++ELVAMDY
Sbjct: 6  CRRLVLVAFLLLCFIFITARARSLRTDI--NGAEKGHDMFIPKEDGVPDSTTEELVAMDY 65

Query: 65 NPASRRPPIHN 76
           PA+++PPIHN
Sbjct: 66 TPATKKPPIHN 74

The following BLAST results are available for this feature:

BLAST of CcUC04G069620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6604255.1	9.9e-19	68.00	hypothetical protein SDJN03_04864, partial [Cucurbita argyrosperma subsp. sorori...	[more]
MBA0677939.1	8.1e-05	43.66	hypothetical protein [Gossypium aridum]	[more]
MBA0761107.1	8.1e-05	43.66	hypothetical protein [Gossypium trilobum]	[more]
KJB18361.1	1.1e-04	43.66	hypothetical protein B456_003G048600 [Gossypium raimondii] >MBA0608535.1 hypothe...	[more]
KAA8546932.1	1.1e-04	45.07	hypothetical protein F0562_003361 [Nyssa sinensis]	[more]

BLAST of CcUC04G069620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G069620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9DK90	3.9e-05	43.66	Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_023796 PE=4 SV=1	[more]
A0A7J8WTP6	3.9e-05	43.66	Uncharacterized protein OS=Gossypium aridum OX=34290 GN=Goari_019312 PE=4 SV=1	[more]
A0A0D2QNE0	5.1e-05	43.66	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_003G048600 PE=4 ...	[more]
A0A7J9IR72	5.1e-05	43.66	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_021254 PE=4 S...	[more]
A0A5J5BZ75	5.1e-05	45.07	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_003361 PE=4 SV=1	[more]

BLAST of CcUC04G069620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..58
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..75
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 2..75
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 2..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G069620.1	CcUC04G069620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity