CcUC04G069330 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G069330
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L17
Location	CicolChr04: 25995627 .. 25998812 (-)
RNA-Seq Expression	CcUC04G069330
Synteny	CcUC04G069330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGTTCAGAAAGCTTGGTCGACATACAAAACACCGGATGTCCATGCTGAGGTTCCTCATTTCTTTCCGCAACCATTAATTACGTTTTATATCCCAATTTTTGAACGTCTATTCTCTTCTTTTGGCAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGTATTCCTTCATTTCAACCCCAATGACTTTCTTCTCATCATTCTGAGATCCCCGTGTTCAACTTAACTGAATTTTGCTTTTCCATGTGATGAAATTCAATGCGTTATGTCTGGAGGTTTTATGTCTTGTATTGTCTAAATTGAGCTCAGATTTTGATTTTTTTTTTCTTATAATCTGAATTTACCGTTTTGGTTAGTTATAGATATGTAATCTATTTCCCCTTGGTTTGCATCTTTTCTGTTCTTTCAAATTTTAACACCTAGCTTATTGTTAAAGGATATGTATCATTCCTTGAGATCAAATAGATATTTTGGATTTATAACATCAACATTATTATGAATTTATGACCATATTTTGAACTTATTGATGCCTTTTTCTTCCAACGTGTTTGTAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGTCCGTAAAACTTTTAAGTATTTTGTTTTCCTTCTCAATGTGTTACTTTTTCTCCTTCTTCTTCATTTGGGGAGGGCATGTTTTGCCTTCAAATTTTGATCTTTGTTGGATGTTCAGAATCACACACTTTAGTTTGGCAAACGTGTTCATGGCCGACATTTGTTGGATACCTATTGGATACTTGGTAGCAAATAGATACGTTTAGATATTAACGGTACAAAGTCAATATTAAATCCAACAATTGTTAACATGTATTGAACACTCTTTAATTAAGCACAATAATATAGGACAAAAGCAATAGATTTTGAGCACAGAATACATCAAACTTATTTTGAAGTATAGAAGTTCATTAACTTATTGACTTTGAATTTTCATAGTGTATAAAAACGATTTTTATTTTTAAAAATGCATATTTTAATAAATATGTCCTTTTCGTGCATGTGTCCTAAATTATTAAAAACGGCATGTTACTGTGCTGAGTGCCATCTCGTATCCATGTCATATTCATATCCATACTTCTTAAGTTGGATTTTTTATCAATTAGAAAATATATGAAATTGCACTTAGTCTTAAGATATTAAATTTTTAGATAAAGGGGTAATTCGTAAATGAAAAATGCATATGGTTCAAGATTTAGCTGATCTTAAATTAGTAAAACTTCGAGGGAGAGAAAAAGGACAAGGCACGGAGCTCAAGTTTTGCAATTCAATAATGCAGGAAGCAAATGATGGCACCGGGCACGGGCTTGATAAATATGCCTGCGGGTAAAAGAGGGAAATAGCCAACATTGGAAGCTAAGCCAAATAAGAAAGAGGCGTGCCCACTTAATAGGTTAGACCACTGAAATTTTGGCCGAGGATGATGCCTTTAATTCAAATACTTCTTATGTCAGTATAAGTAACCCTCAAAAGATGGAAACCAGAAATTAACAACGGGATATCAATATGAGAAAGAAAGATCTTCAGAAGGAAGATTAGTTGGAACCATTTGAAAGTGAAGGAACTGTGGTTTGAGTTTCGCTGGATGTTGTTGAATTAATGTGGCATTTCAATTTCAGTGACATCGTATAATGTTTGAATTTAAAATGTAATGGCTCTGCGCTACACAAAGGTGAATATAGTTGGTTCCGCTTCTGCTTACTCCTGTTTGCACTAAGGACACTTTGTCATTTACTTCAGACTAACATACTGGAATCTAGAAGAAAAACAACGAAATCAGCTTACTAATAGAGTTGGTGTGATAGTTTAATAACTCTATTACACCATAGACAGCGTGCAAAGACACTCTTACTATGTTTTGTTTCTGCAATGGTGCACTCTCTGTTGGAGGTATAAGAGGATCTGATTCGTTTGTTTTGGGACTGCTAGTTTGCGTACCACCTTTGGAGTTGCTGGCTGAGAGCTTTTGGAGTTTGTTAGATTTGAAATAGAGATATTAGAGACCAGACTTCGAAGGTGAGTTCGCACTCTCCTTTCATTGAGGGAGCATGGTAGAGTTTTTTGGCATGCTAGTTTCTTTACAGTTTTCTGGGGTATTTCATATTTGGATCAAGAGGAATAATAGGATTTTTAGAGAGGTGGAGAGATTGGGTGACAATGTTTGGGACGAGGCTAGATTTAACGCCTCTTTGTGGGCATTCGTCACTAAATCTTTTCGTAATTACGAGCTTGGTCATGTTTTCTTGGCCTGAAGTCCTGTTTGTAGGTACAGACTTATAGTCAGATGCCCTTTTCTTTTTTCTGTTGTGCCTAGTGTTTTTTGTTGCACTTGTATATTCTTTCATATTTCTCAAAAGCATCGTTTCTTATATAAGAAAAGAAAAACTTCGCTTCACTATTTGCTTTTTGATTCATAAAAGATAAGCATGTTGTGACTTATTTTAATTTGTTTTCAATCTAGGGCACCCTTTGTGCTGCAAGGCGTGCTGCTGCATTTGTAAGAGGCGATGCTGTCCTTCACAAACTATTCACAGAAATGGCTTATCGATACAAGTGAATCCCAAATCTATTAACCTCTAGTTCATGCTTTTGTTTATTATTATTAAATTGGACAGATGTCGTGTTAACAGGGATAGAGCTGGCGGCTATACAAGATTTCTGCGGACTCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAGTAAGTGCTTACCATCCACAGCTGCTATATTTCTCCAGTGAGACAACTGTAATGCATGATCAATAGCTGATGTATTTCTCTCATAATCGGTTGTAAATAAATACTATACGGCTGGTGCAATTTTTGATCGACTATTTGTCCTGTTGATACAGATTTACTGGTAGTGAGGGTAATAAGCATTAATCTATTTGATGGCGCACTCTCCATGAAAGTTGAATCAATTGTATTAATTCGTAATTTATCTATGCTATTGCTACAGATTTATTGATAGAGAAAATGAACTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGGCTCCATTGGATCCGTGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCTAAAGAGATCAAATCCGACTCGGAAATCTGA

mRNA sequence

ATGACGAAGTTCAGAAAGCTTGGTCGACATACAAAACACCGGATGTCCATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGGCACCCTTTGTGCTGCAAGGCGTGCTGCTGCATTTGTAAGAGGCGATGCTGTCCTTCACAAACTATTCACAGAAATGGCTTATCGATACAAGGATAGAGCTGGCGGCTATACAAGATTTCTGCGGACTCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAACTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGGCTCCATTGGATCCGTGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCTAAAGAGATCAAATCCGACTCGGAAATCTGA

Coding sequence (CDS)

ATGACGAAGTTCAGAAAGCTTGGTCGACATACAAAACACCGGATGTCCATGCTGAGAACAATGGTTTCTCAGTTGGTGAAGCACGAACGCATTGAGACTACTGTTGCTAAGGCTAAAGAAGTTCGGCGGCTTGCTGATAACATGGTTCAATTTGGAAAAGAGGGCACCCTTTGTGCTGCAAGGCGTGCTGCTGCATTTGTAAGAGGCGATGCTGTCCTTCACAAACTATTCACAGAAATGGCTTATCGATACAAGGATAGAGCTGGCGGCTATACAAGATTTCTGCGGACTCGTATACGTGTTGGCGATGCTGCACCAATGGCTTATATAGAATTTATTGATAGAGAAAATGAACTCAGACAGTCAAAGCCTCCAAATCCTCCACCACCTCAGAGGGCTCCATTGGATCCGTGGACAAGATCACGGCTTAGCAAGCAGTTCGCACCACCTAAAGAGATCAAATCCGACTCGGAAATCTGA

Protein sequence

MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAARRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI

Homology

[Close]

BLAST of CcUC04G069330 vs. NCBI nr
Match: XP_038880926.1 (50S ribosomal protein L17 [Benincasa hispida])

HSP 1 Score: 312.8 bits (800), Expect = 1.7e-81
Identity = 159/159 (100.00%), Postives = 159/159 (100.00%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA
Sbjct: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of CcUC04G069330 vs. NCBI nr
Match: XP_008441029.1 (PREDICTED: 50S ribosomal protein L17 [Cucumis melo] >KAA0025538.1 50S ribosomal protein L17 [Cucumis melo var. makuwa] >TYK25697.1 50S ribosomal protein L17 [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 149/159 (93.71%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKEGTL AA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAAFVRGDA+LHKLFTE+AYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQR PLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of CcUC04G069330 vs. NCBI nr
Match: XP_004148646.1 (uncharacterized protein LOC101221792 [Cucumis sativus] >KGN48368.1 hypothetical protein Csa_003833 [Cucumis sativus])

HSP 1 Score: 292.4 bits (747), Expect = 2.4e-75
Identity = 150/159 (94.34%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKEGTL AA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGDAVLHKLFTE+AYRYKDR GGYTRFLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQR PLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of CcUC04G069330 vs. NCBI nr
Match: XP_022979157.1 (uncharacterized protein LOC111478877 [Cucurbita maxima])

HSP 1 Score: 290.0 bits (741), Expect = 1.2e-74
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKEG+LCAA
Sbjct: 21  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAA 80

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AAAFVRGD VLHKLFTE+AYRYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 81  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 140

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNP PPQ+AP+DPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 141 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of CcUC04G069330 vs. NCBI nr
Match: XP_022132421.1 (uncharacterized protein LOC111005280 [Momordica charantia])

HSP 1 Score: 288.5 bits (737), Expect = 3.5e-74
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR T HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKE +LCAA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAAFVRGD VLHKLFTE+AYRYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNP P Q+APLDPWTRSRLSKQFAPPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

[Close]

BLAST of CcUC04G069330 vs. ExPASy Swiss-Prot
Match: A0L5Z9 (50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) OX=156889 GN=rplQ PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 7.5e-27
Identity = 60/113 (53.10%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 5   RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAARRAA 64
           R+L R T HR +M++ M+  L KHERIETTV +AKE+R +A+ ++  GK G L A R+A 
Sbjct: 8   RRLSRDTSHRQAMIKNMLVSLFKHERIETTVPRAKELRPVAEKVITLGKRGDLHARRQAL 67

Query: 65  AFVRGD-AVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRE 117
           + + GD  V+HKLFT++A R KDR GGYTR L+TR R GD APM++IE ++R+
Sbjct: 68  SILNGDKEVVHKLFTDLAERNKDRQGGYTRILKTRFRYGDCAPMSFIELVERD 120

[Close]

BLAST of CcUC04G069330 vs. ExPASy Swiss-Prot
Match: Q749B4 (50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-25
Identity = 65/148 (43.92%), Postives = 90/148 (60.81%), Query Frame = 0


Query: 5   RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAARRAA 64
           R+LGR T HR++M R MV+ L  HERI TT AKAKE+R +A+ M+  GK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLFAHERITTTDAKAKELRSIAEKMITLGKRGDLHAVRQAA 67

Query: 65  AFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELRQSKP 124
           +++R   V+ KLF+ +A RYK+R GGYTR ++  IR GD AP++ IE ++ + E +  K 
Sbjct: 68  SYIRDKKVVTKLFSTIAPRYKERDGGYTRIIKLGIRPGDCAPLSVIELVEEQFEKKVKKS 127

Query: 125 PNPPPPQRAPLDPWTRSRLSKQFAPPKE 153
               P Q     P          A P+E
Sbjct: 128 KPTAPAQAVATKPAVEETREAAAAQPQE 155

[Close]

BLAST of CcUC04G069330 vs. ExPASy Swiss-Prot
Match: B3E858 (50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) OX=398767 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-25
Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 5   RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAARRAA 64
           R+LGR T HR++M R MV+ L+ HERI TT AKAKE+R +A+ M+  GK G L A R+AA
Sbjct: 8   RRLGRTTSHRIAMFRNMVTSLLNHERIVTTDAKAKEIRSVAEKMITLGKRGDLHAHRQAA 67

Query: 65  AFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFID 115
           A++R  +V+ KLF+ +A RYKDRAGGYTR ++   R+GDAA ++ IE ++
Sbjct: 68  AYIREKSVVTKLFSTIAPRYKDRAGGYTRIIKLGQRLGDAASLSVIELVE 117

[Close]

BLAST of CcUC04G069330 vs. ExPASy Swiss-Prot
Match: A1ALW8 (50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 103807 / OttBd1) OX=338966 GN=rplQ PE=3 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.4e-25
Identity = 60/112 (53.57%), Postives = 80/112 (71.43%), Query Frame = 0


Query: 5   RKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAARRAA 64
           R+LGR T HR +M R MV+ L  HE+I TT AKAKE+R +A+ M+  GK G L + R AA
Sbjct: 8   RRLGRKTSHREAMFRNMVTSLFAHEKITTTDAKAKEIRSVAEKMITLGKRGDLHSTRIAA 67

Query: 65  AFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRE 117
           AF+R  +V+ KLF+ +A RYK+RAGGYTR ++   R GDAAPM+ IE ++ E
Sbjct: 68  AFIREKSVVTKLFSTIAPRYKERAGGYTRIIKVGSRNGDAAPMSIIELVEEE 119

[Close]

BLAST of CcUC04G069330 vs. ExPASy Swiss-Prot
Match: Q8RE45 (50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / DSM 15643 / BCRC 10681 / CIP 101130 / JCM 8532 / KCTC 2640 / LMG 13131 / VPI 4355) OX=190304 GN=rplQ PE=3 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.1e-25
Identity = 56/110 (50.91%), Postives = 79/110 (71.82%), Query Frame = 0


Query: 4   FRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAARRA 63
           +RKLGR   HR +ML+ M   L+K ERIETTV +AKE+R+ A+ M+ FGK+ TL + R A
Sbjct: 7   YRKLGRRADHRKAMLKNMTISLIKAERIETTVTRAKELRKFAERMITFGKKNTLASRRNA 66

Query: 64  AAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFI 114
            AF+R + V+ K+F E+A +Y +R GGYTR ++T +R GD+A MA IE +
Sbjct: 67  FAFLRDEEVVAKIFNEIAPKYAERNGGYTRIIKTSVRKGDSAEMAIIELV 116

[Close]

BLAST of CcUC04G069330 vs. ExPASy TrEMBL
Match: A0A5D3DPW3 (50S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1230G00280 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 149/159 (93.71%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKEGTL AA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAAFVRGDA+LHKLFTE+AYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQR PLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of CcUC04G069330 vs. ExPASy TrEMBL
Match: A0A0A0KFP7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483480 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 150/159 (94.34%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKEGTL AA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGDAVLHKLFTE+AYRYKDR GGYTRFLRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDAVLHKLFTELAYRYKDRTGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQR PLDPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQFAPPKEIKSDSEI 159

[Close]

BLAST of CcUC04G069330 vs. ExPASy TrEMBL
Match: A0A1S3B2I7 (50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103485266 PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 149/159 (93.71%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQ GKEGTL AA
Sbjct: 1   MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQLGKEGTLSAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAAFVRGDA+LHKLFTE+AYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEF+DRENELR
Sbjct: 61  RRAAAFVRGDAILHKLFTELAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFVDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNPPPPQR PLDPWTRSRLSKQ APPKEIKSDSEI
Sbjct: 121 QSKPPNPPPPQRPPLDPWTRSRLSKQLAPPKEIKSDSEI 159

[Close]

BLAST of CcUC04G069330 vs. ExPASy TrEMBL
Match: A0A6J1IN09 (uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877 PE=3 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.8e-75
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKEG+LCAA
Sbjct: 21  MTKFRKLGRPAAHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKEGSLCAA 80

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           R AAAFVRGD VLHKLFTE+AYRYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 81  RHAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 140

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNP PPQ+AP+DPWTRSRLSKQFAPPKEIKSDSEI
Sbjct: 141 QSKPPNPQPPQKAPMDPWTRSRLSKQFAPPKEIKSDSEI 179

[Close]

BLAST of CcUC04G069330 vs. ExPASy TrEMBL
Match: A0A6J1BS83 (uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005280 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 1.7e-74
Identity = 147/159 (92.45%), Postives = 152/159 (95.60%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR T HRMSMLRTMVSQLVKHERIETTVAKAKE+RRLADNMVQFGKE +LCAA
Sbjct: 1   MTKFRKLGRPTGHRMSMLRTMVSQLVKHERIETTVAKAKEIRRLADNMVQFGKENSLCAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAAAFVRGD VLHKLFTE+AYRYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAAFVRGDDVLHKLFTELAYRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIKSDSEI 160
           QSKPPNP P Q+APLDPWTRSRLSKQFAPPKEIKSDSE+
Sbjct: 121 QSKPPNPQPQQKAPLDPWTRSRLSKQFAPPKEIKSDSEV 159

[Close]

BLAST of CcUC04G069330 vs. TAIR 10
Match: AT5G09770.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-69
Identity = 135/160 (84.38%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLVKHERIETTV KAKEVRRLADNM+Q GKEG+L AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVKHERIETTVTKAKEVRRLADNMIQLGKEGSLSAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGD VLHK+FTE+A+RYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRLLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  P PPQR PLDPW RSRL++QFAPPKE K  DSE+
Sbjct: 121 QSKPATPQPPQRVPLDPWERSRLTRQFAPPKEEKIPDSEL 160

[Close]

BLAST of CcUC04G069330 vs. TAIR 10
Match: AT5G64650.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 256.5 bits (654), Expect = 1.4e-68
Identity = 132/160 (82.50%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 1   MTKFRKLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAA 60
           MTKFRKLGR   HRMSMLRTMVSQLV+HERIETTV KAKEVRRLADNM+Q GKEG+L AA
Sbjct: 1   MTKFRKLGRPAGHRMSMLRTMVSQLVQHERIETTVTKAKEVRRLADNMIQLGKEGSLAAA 60

Query: 61  RRAAAFVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFIDRENELR 120
           RRAA FVRGD VLHK+FTE+A+RYKDRAGGYTR LRTRIRVGDAAPMAYIEFIDRENELR
Sbjct: 61  RRAAGFVRGDDVLHKIFTELAHRYKDRAGGYTRMLRTRIRVGDAAPMAYIEFIDRENELR 120

Query: 121 QSKPPNPPPPQRAPLDPWTRSRLSKQFAPPKEIK-SDSEI 160
           QSKP  P PP R PLDPW RSRL++Q+APPKE K SDS++
Sbjct: 121 QSKPATPQPPPRVPLDPWARSRLTRQYAPPKEEKTSDSDL 160

[Close]

BLAST of CcUC04G069330 vs. TAIR 10
Match: AT3G54210.1 (Ribosomal protein L17 family protein )

HSP 1 Score: 94.7 bits (234), Expect = 6.9e-20
Identity = 48/108 (44.44%), Postives = 69/108 (63.89%), Query Frame = 0


Query: 6   KLGRHTKHRMSMLRTMVSQLVKHERIETTVAKAKEVRRLADNMVQFGKEGTLCAARRAAA 65
           KL R    R ++LR + +QL+KH RI+TT A+A  +R+  D M+   K+G+L   R+A  
Sbjct: 104 KLNRPPDQRKALLRGLTTQLLKHGRIKTTRARASAMRKFVDKMITLAKDGSLHKRRQALG 163

Query: 66  FVRGDAVLHKLFTEMAYRYKDRAGGYTRFLRTRIRVGDAAPMAYIEFI 114
           ++    ++H LF E+  RY +R GGYTR +RT  R GD APMAYIE +
Sbjct: 164 YIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPRRGDNAPMAYIELV 211

The following BLAST results are available for this feature:

BLAST of CcUC04G069330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880926.1	1.7e-81	100.00	50S ribosomal protein L17 [Benincasa hispida]	[more]
XP_008441029.1	2.4e-75	93.71	PREDICTED: 50S ribosomal protein L17 [Cucumis melo] >KAA0025538.1 50S ribosomal ...	[more]
XP_004148646.1	2.4e-75	94.34	uncharacterized protein LOC101221792 [Cucumis sativus] >KGN48368.1 hypothetical ...	[more]
XP_022979157.1	1.2e-74	92.45	uncharacterized protein LOC111478877 [Cucurbita maxima]	[more]
XP_022132421.1	3.5e-74	92.45	uncharacterized protein LOC111005280 [Momordica charantia]	[more]

BLAST of CcUC04G069330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0L5Z9	7.5e-27	53.10	50S ribosomal protein L17 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
Q749B4	1.1e-25	43.92	50S ribosomal protein L17 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 1...	[more]
B3E858	1.4e-25	53.64	50S ribosomal protein L17 OS=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278...	[more]
A1ALW8	1.4e-25	53.57	50S ribosomal protein L17 OS=Pelobacter propionicus (strain DSM 2379 / NBRC 1038...	[more]
Q8RE45	3.1e-25	50.91	50S ribosomal protein L17 OS=Fusobacterium nucleatum subsp. nucleatum (strain AT...	[more]

BLAST of CcUC04G069330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPW3	1.2e-75	93.71	50S ribosomal protein L17 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0KFP7	1.2e-75	94.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483480 PE=3 SV=1	[more]
A0A1S3B2I7	1.2e-75	93.71	50S ribosomal protein L17 OS=Cucumis melo OX=3656 GN=LOC103485266 PE=3 SV=1	[more]
A0A6J1IN09	5.8e-75	92.45	uncharacterized protein LOC111478877 OS=Cucurbita maxima OX=3661 GN=LOC111478877...	[more]
A0A6J1BS83	1.7e-74	92.45	uncharacterized protein LOC111005280 OS=Momordica charantia OX=3673 GN=LOC111005...	[more]

BLAST of CcUC04G069330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09770.1	1.2e-69	84.38	Ribosomal protein L17 family protein	[more]
AT5G64650.1	1.4e-68	82.50	Ribosomal protein L17 family protein	[more]
AT3G54210.1	6.9e-20	44.44	Ribosomal protein L17 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000456	Ribosomal protein L17	PFAM	PF01196	Ribosomal_L17	coord: 17..113 e-value: 1.2E-31 score: 109.6
IPR000456	Ribosomal protein L17	TIGRFAM	TIGR00059	TIGR00059	coord: 4..114 e-value: 8.4E-39 score: 130.4
IPR000456	Ribosomal protein L17	PANTHER	PTHR14413	RIBOSOMAL PROTEIN L17	coord: 1..156
IPR000456	Ribosomal protein L17	HAMAP	MF_01368	Ribosomal_L17	coord: 2..113 score: 23.417976
IPR036373	Ribosomal protein L17 superfamily	GENE3D	3.90.1030.10	Ribosomal protein L17	coord: 1..113 e-value: 4.9E-44 score: 151.4
IPR036373	Ribosomal protein L17 superfamily	SUPERFAMILY	64263	Prokaryotic ribosomal protein L17	coord: 3..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..159
None	No IPR available	PANTHER	PTHR14413:SF22	BNAA09G06940D PROTEIN	coord: 1..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G069330.1	CcUC04G069330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome