CcUC04G069130 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G069130
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 25779358 .. 25779669 (-)
RNA-Seq ExpressionCcUC04G069130
SyntenyCcUC04G069130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTCACGGGGGGAAGCATTTCTGGCATTGTATCGGTGGATGTGCTGGACAAGTTTGTCCTTGACATAGCTGTTAAGGTAGTGGCTGATTATTGCAATAAAAATGGGATTGAAGCGAGCTTGGTGGCTGTGGTGGATGGTTTTGTTGAGACGGGGCCCAATGGAAAAACATACACCCTAACTCTGAAGCTGAAGGTCAAGGTCGGTGATGTTTATGTATTTAAGCTCTTTAAGGCTGTGGTGTTTGCCCCATACATCGGCATTCCAACCCCCGTGTCTTTCCAATATGTCGAAGACGTCAGCATCTAA

mRNA sequence

ATGACTCTCACGGGGGGAAGCATTTCTGGCATTGTATCGGTGGATGTGCTGGACAAGTTTGTCCTTGACATAGCTGTTAAGGTAGTGGCTGATTATTGCAATAAAAATGGGATTGAAGCGAGCTTGGTGGCTGTGGTGGATGGTTTTGTTGAGACGGGGCCCAATGGAAAAACATACACCCTAACTCTGAAGCTGAAGGTCAAGGTCGGTGATGTTTATGTATTTAAGCTCTTTAAGGCTGTGGTGTTTGCCCCATACATCGGCATTCCAACCCCCGTGTCTTTCCAATATGTCGAAGACGTCAGCATCTAA

Coding sequence (CDS)

ATGACTCTCACGGGGGGAAGCATTTCTGGCATTGTATCGGTGGATGTGCTGGACAAGTTTGTCCTTGACATAGCTGTTAAGGTAGTGGCTGATTATTGCAATAAAAATGGGATTGAAGCGAGCTTGGTGGCTGTGGTGGATGGTTTTGTTGAGACGGGGCCCAATGGAAAAACATACACCCTAACTCTGAAGCTGAAGGTCAAGGTCGGTGATGTTTATGTATTTAAGCTCTTTAAGGCTGTGGTGTTTGCCCCATACATCGGCATTCCAACCCCCGTGTCTTTCCAATATGTCGAAGACGTCAGCATCTAA

Protein sequence

MTLTGGSISGIVSVDVLDKFVLDIAVKVVADYCNKNGIEASLVAVVDGFVETGPNGKTYTLTLKLKVKVGDVYVFKLFKAVVFAPYIGIPTPVSFQYVEDVSI
Homology
BLAST of CcUC04G069130 vs. NCBI nr
Match: KAA0040704.1 (hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK00712.1 hypothetical protein E5676_scaffold75352G00010 [Cucumis melo var. makuwa] >TYK14273.1 hypothetical protein E5676_scaffold4170G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.6e-14
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 0

Query: 1   MTLTGGSISGIVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNGKTY 60
           MTL      G+  V+ LD  +L++ V +V ++C    GI+A    ++DG  E GPNGKTY
Sbjct: 1   MTLGINISGGLQIVNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGKTY 60

Query: 61  TLTLKLKVKVGDVYVFKLFKAVVFAPYIGIPTP-VSFQYVEDVSI 104
           TL LKLKV++GD YV K+     F P+IG+PT  +SF+YVE+++I
Sbjct: 61  TLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

BLAST of CcUC04G069130 vs. NCBI nr
Match: KAE8647454.1 (hypothetical protein Csa_003781 [Cucumis sativus])

HSP 1 Score: 81.6 bits (200), Expect = 4.2e-12
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 1   MTLTGGSISG---IVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNG 60
           MTL G  ISG   IV +D+ D  + D+ V+ V  +C     I+A+   ++DG +E G NG
Sbjct: 1   MTL-GIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNG 60

Query: 61  KTYTLTLKLKVKVGDVYVFKLFKAVVFAPYIGIPTPVSFQYVEDVSI 104
           KTYTL LK+KV++GD YV K+    +F P++G P+ VSF+Y+E+++I
Sbjct: 61  KTYTLKLKIKVRIGDAYVVKIVLVRLFFPFVGYPSVVSFEYLEEINI 106

BLAST of CcUC04G069130 vs. NCBI nr
Match: KGN48337.1 (hypothetical protein Csa_004454 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 11  IVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNGKTYTLTLKLKVKV 70
           I+ VD  D+ +++  V +V ++C   + I+     ++ G  E GPNGKTYTL LKLK KV
Sbjct: 11  ILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKV 70

Query: 71  GDVYVFKLFKAVVFAPYIGIPTPVSFQYVEDVSI 104
           GD YV K+     F P  G P+ +SF+  +++++
Sbjct: 71  GDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

BLAST of CcUC04G069130 vs. ExPASy TrEMBL
Match: A0A5D3BPM4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4170G00020 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.5e-15
Identity = 48/105 (45.71%), Postives = 69/105 (65.71%), Query Frame = 0

Query: 1   MTLTGGSISGIVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNGKTY 60
           MTL      G+  V+ LD  +L++ V +V ++C    GI+A    ++DG  E GPNGKTY
Sbjct: 1   MTLGINISGGLQIVNPLDSLLLEVCVPLVLNHCRAILGIDAQFEGIIDGHFEVGPNGKTY 60

Query: 61  TLTLKLKVKVGDVYVFKLFKAVVFAPYIGIPTP-VSFQYVEDVSI 104
           TL LKLKV++GD YV K+     F P+IG+PT  +SF+YVE+++I
Sbjct: 61  TLKLKLKVRIGDAYVIKIVVVKFFWPFIGLPTNLLSFEYVEEINI 105

BLAST of CcUC04G069130 vs. ExPASy TrEMBL
Match: A0A0A0KFK8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.2e-12
Identity = 47/107 (43.93%), Postives = 71/107 (66.36%), Query Frame = 0

Query: 1   MTLTGGSISG---IVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNG 60
           MTL G  ISG   IV +D+ D  + D+ V+ V  +C     I+A+   ++DG +E G NG
Sbjct: 1   MTL-GIGISGGLQIVPLDLSDNTLCDLLVQHVMKHCQSVLQIDATFEGLIDGKIEIGLNG 60

Query: 61  KTYTLTLKLKVKVGDVYVFKLFKAVVFAPYIGIPTPVSFQYVEDVSI 104
           KTYTL LK+KV++GD YV K+    +F P++G P+ VSF+Y+E+++I
Sbjct: 61  KTYTLKLKIKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEINI 106

BLAST of CcUC04G069130 vs. ExPASy TrEMBL
Match: A0A0A0KKQ8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.7e-12
Identity = 43/100 (43.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query: 5   GGSISGIVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNGKTYTLTL 64
           GG +  IV +D+ D  + D+ V+ V  +C     I+A+    +DG +E G NGKTY L L
Sbjct: 8   GGGLQ-IVPLDLSDNTLCDLLVQHVIKHCQSVLQIDATFEGFIDGSIEIGLNGKTYILKL 67

Query: 65  KLKVKVGDVYVFKLFKAVVFAPYIGIPTPVSFQYVEDVSI 104
           KLKV++GD YV K+    +F P++G P+ VSF+Y+E++SI
Sbjct: 68  KLKVRIGDAYVVKIVLVKLFFPFVGFPSVVSFEYLEEISI 106

BLAST of CcUC04G069130 vs. ExPASy TrEMBL
Match: A0A0A0KFL5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.0e-11
Identity = 43/96 (44.79%), Postives = 62/96 (64.58%), Query Frame = 0

Query: 5   GGSISGIVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNGKTYTLTL 64
           GGS+  IV +D+ D  + D+ V+ V  +C     I+A+    +DG +E G NGKTY+  L
Sbjct: 8   GGSLQ-IVPMDLSDNTLCDLLVQHVMKHCQTVLQIDATYEGFIDGSIEIGMNGKTYSFKL 67

Query: 65  KLKVKVGDVYVFKLFKAVVFAPYIGIPTPVSFQYVE 100
           KLK+KVGD YV K     +F P+IG+P+ VSF+Y+E
Sbjct: 68  KLKIKVGDAYVIKPVLVKIFFPFIGLPSIVSFEYLE 102

BLAST of CcUC04G069130 vs. ExPASy TrEMBL
Match: A0A0A0KIX9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 36/94 (38.30%), Postives = 57/94 (60.64%), Query Frame = 0

Query: 11  IVSVDVLDKFVLDIAVKVVADYCNK-NGIEASLVAVVDGFVETGPNGKTYTLTLKLKVKV 70
           I+ VD  D+ +++  V +V ++C   + I+     ++ G  E GPNGKTYTL LKLK KV
Sbjct: 11  ILPVDPSDRSLIEQCVPLVINHCQSIHQIDVKFEGILHGQCEVGPNGKTYTLRLKLKDKV 70

Query: 71  GDVYVFKLFKAVVFAPYIGIPTPVSFQYVEDVSI 104
           GD YV K+     F P  G P+ +SF+  +++++
Sbjct: 71  GDRYVLKIGVIKFFCPLFGPPSLLSFECSKEINV 104

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0040704.11.6e-1445.71hypothetical protein E6C27_scaffold529G00200 [Cucumis melo var. makuwa] >TYK0071... [more]
KAE8647454.14.2e-1243.93hypothetical protein Csa_003781 [Cucumis sativus][more]
KGN48337.12.4e-0738.30hypothetical protein Csa_004454 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BPM47.5e-1545.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KFK81.2e-1243.93Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483240 PE=4 SV=1[more]
A0A0A0KKQ82.7e-1243.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483230 PE=4 SV=1[more]
A0A0A0KFL53.0e-1144.79Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483250 PE=4 SV=1[more]
A0A0A0KIX91.2e-0738.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G483235 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G069130.1CcUC04G069130.1mRNA