CcUC04G068830 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G068830
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 25529878 .. 25530327 (-)
RNA-Seq ExpressionCcUC04G068830
SyntenyCcUC04G068830
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCCTGGTAAAACTGGCTCAAATTCACCGTACTGAACCGCTGACCTTCGTAGAAGGCGTTAACCTCAATAGCGTCGTAGTAGATTCCGATCCTCCGATTCGGATTCCTGGCGGTGATATTCAGAGCGAGATTGTAATGGAGGTTGTTATTGTTAGGCGTAGTGAGATTGAACTGCGTGAGAGAGGCGTCGGTGGCGTGGAATTGGAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGACAGCAATGCCGAGGACGATGACGATGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCGTAGTAAGCTCCGTTGAGATGGGAAGCCATTGTTGA

mRNA sequence

ATGCCCCTGGTAAAACTGGCTCAAATTCACCGTACTGAACCGCTGACCTTCGTAGAAGGCGTTAACCTCAATAGCGTCGTAGTAGATTCCGATCCTCCGATTCGGATTCCTGGCGGTGATATTCAGAGCGAGATTGTAATGGAGGTTGTTATTGTTAGGCGTAGTGAGATTGAACTGCGTGAGAGAGGCGTCGGTGGCGTGGAATTGGAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGACAGCAATGCCGAGGACGATGACGATGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCGTAGTAAGCTCCGTTGAGATGGGAAGCCATTGTTGA

Coding sequence (CDS)

ATGCCCCTGGTAAAACTGGCTCAAATTCACCGTACTGAACCGCTGACCTTCGTAGAAGGCGTTAACCTCAATAGCGTCGTAGTAGATTCCGATCCTCCGATTCGGATTCCTGGCGGTGATATTCAGAGCGAGATTGTAATGGAGGTTGTTATTGTTAGGCGTAGTGAGATTGAACTGCGTGAGAGAGGCGTCGGTGGCGTGGAATTGGAGGAGATTTGGACGGAAGATGAGCCACAAGAGGAAGACAGCAATGCCGAGGACGATGACGATGGTGATGATGATTTGACAGATGAGGTTGAGGATACAGCCGCAGCAGCAGTTGCAGAGGCAGCCGAGACAGCCGCAACAGCCGCAGCCGCCGTCGCCGCGGCCAGGGCGGTGGTAGGACTTGGAGGAGGGAGGAATGGAAGGGCCGTAGTAAGCTCCGTTGAGATGGGAAGCCATTGTTGA

Protein sequence

MPLVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELRERGVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVAAARAVVGLGGGRNGRAVVSSVEMGSHC
Homology
BLAST of CcUC04G068830 vs. NCBI nr
Match: KAA8516802.1 (hypothetical protein F0562_017088 [Nyssa sinensis])

HSP 1 Score: 72.4 bits (176), Expect = 3.7e-09
Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 0

Query: 3   LVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELRER 62
           L+K  Q    E L FVE     ++VV +D  + +P G ++ E+V+E V     E+EL E 
Sbjct: 18  LIKWLQGGDGEALVFVESSGFYAIVVYADALVWVPDGHVEGEVVVEGV-GGGGEVELSEG 77

Query: 63  GVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVA 122
            VG ++L  +  EDEP++ED NA D DDGDDDL +EVEDTA          AATAA A  
Sbjct: 78  SVGDMKLHLVGAEDEPEDEDGNAYDGDDGDDDLEEEVEDTAT--------EAATAAIAAI 137

Query: 123 AARAVVGLGGGRNGRAVVSSVE 145
           AA AVVG  G +    +V+ ++
Sbjct: 138 AAGAVVGFPGIQRSSVLVTLIK 150

BLAST of CcUC04G068830 vs. NCBI nr
Match: CAD1817939.1 (unnamed protein product [Ananas comosus var. bracteatus])

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-07
Identity = 56/130 (43.08%), Postives = 74/130 (56.92%), Query Frame = 0

Query: 3   LVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELRER 62
           LV+  Q    E +  VE +  + VVVD+DP + +  GD+  E+  EV  VR  E ELRER
Sbjct: 58  LVEGRQQLEAEAVAVVERLAFDVVVVDADPLVAVADGDVDGEV--EVEGVRGGEGELRER 117

Query: 63  GVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVA 122
           G  GV  E +  +DEP +ED +AEDDDDG+D+L +  E        EA    A  AAA A
Sbjct: 118 GGLGVGFEAVGADDEPDDEDDDAEDDDDGEDELEEGAE--------EAGAGVAAGAAADA 177

Query: 123 AARAVVGLGG 133
           A R + G+GG
Sbjct: 178 AVRVLRGIGG 177

BLAST of CcUC04G068830 vs. NCBI nr
Match: KCW49000.1 (hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis])

HSP 1 Score: 61.2 bits (147), Expect = 8.6e-06
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 29  DSDPPIRIPGGDIQSEIVMEVVIVRRSEIELRERGVGGVELEEIWTEDEPQEEDSNAEDD 88
           D D  +R+P G+++ E+V E   V   E+EL E  VG VEL+E+  EDEP++E    + D
Sbjct: 4   DPDAAVRVPDGEVELEVVAEG--VGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGD 63

Query: 89  DDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVAAARAVVGLGGGRNGRAVVSSVEMG 147
             G+D++ DE+E+ AA A          A AA AAA AVVG+  G +G AVV +VE+G
Sbjct: 64  HHGEDEVEDELEEAAATA----------ADAAPAAAGAVVGVLLGGHGGAVVGAVEVG 109

BLAST of CcUC04G068830 vs. NCBI nr
Match: KAE8021745.1 (hypothetical protein FH972_007610 [Carpinus fangiana])

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-05
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 1   MPLVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELR 60
           +PLVK  +    E L  V  V+L++VVVD+D  + +P GD++ ++V+E V V   E+EL 
Sbjct: 73  VPLVKQRRNLDVESLALVVSVDLDAVVVDADALVGVPDGDVEGKVVVERV-VGGGEVELG 132

Query: 61  ERGVGGVELEEIWTEDEPQEEDS 84
           E+GVG  EL  +  E+EP++ED+
Sbjct: 133 EQGVGDAELHLVGAEEEPEDEDN 154

BLAST of CcUC04G068830 vs. NCBI nr
Match: KAF5473491.1 (hypothetical protein F2P56_010099 [Juglans regia])

HSP 1 Score: 60.1 bits (144), Expect = 1.9e-05
Identity = 54/145 (37.24%), Postives = 84/145 (57.93%), Query Frame = 0

Query: 1   MPLVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELR 60
           M LVK  + HRT+PL F  G   +++VV +D  + +   D++ ++V+E VIV   E+EL 
Sbjct: 1   MSLVKWGKRHRTKPLIFEIGPGFDAIVVYADLFVGVSNVDVEGKVVVERVIV-GGEVELG 60

Query: 61  ERGVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAATAAAA 120
           +RGVG ++L+ +  +DEP++ED  A +D D  ++L  +             E A TAAA 
Sbjct: 61  KRGVGDMKLDPVGADDEPEDEDRKAYNDSDAYNELEKQ------------TEKAPTAAAT 120

Query: 121 VAAARAVVGLGGGRNGRAVVSSVEM 146
            AA+ AV+      N RAVV SV++
Sbjct: 121 TAASVAVIVSIRRWNCRAVVCSVQV 132

BLAST of CcUC04G068830 vs. ExPASy TrEMBL
Match: A0A5J4ZGS4 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017088 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 1.8e-09
Identity = 60/142 (42.25%), Postives = 82/142 (57.75%), Query Frame = 0

Query: 3   LVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELRER 62
           L+K  Q    E L FVE     ++VV +D  + +P G ++ E+V+E V     E+EL E 
Sbjct: 18  LIKWLQGGDGEALVFVESSGFYAIVVYADALVWVPDGHVEGEVVVEGV-GGGGEVELSEG 77

Query: 63  GVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVA 122
            VG ++L  +  EDEP++ED NA D DDGDDDL +EVEDTA          AATAA A  
Sbjct: 78  SVGDMKLHLVGAEDEPEDEDGNAYDGDDGDDDLEEEVEDTAT--------EAATAAIAAI 137

Query: 123 AARAVVGLGGGRNGRAVVSSVE 145
           AA AVVG  G +    +V+ ++
Sbjct: 138 AAGAVVGFPGIQRSSVLVTLIK 150

BLAST of CcUC04G068830 vs. ExPASy TrEMBL
Match: A0A6V7NH64 (Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS1150 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 9.9e-08
Identity = 56/130 (43.08%), Postives = 74/130 (56.92%), Query Frame = 0

Query: 3   LVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELRER 62
           LV+  Q    E +  VE +  + VVVD+DP + +  GD+  E+  EV  VR  E ELRER
Sbjct: 58  LVEGRQQLEAEAVAVVERLAFDVVVVDADPLVAVADGDVDGEV--EVEGVRGGEGELRER 117

Query: 63  GVGGVELEEIWTEDEPQEEDSNAEDDDDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVA 122
           G  GV  E +  +DEP +ED +AEDDDDG+D+L +  E        EA    A  AAA A
Sbjct: 118 GGLGVGFEAVGADDEPDDEDDDAEDDDDGEDELEEGAE--------EAGAGVAAGAAADA 177

Query: 123 AARAVVGLGG 133
           A R + G+GG
Sbjct: 178 AVRVLRGIGG 177

BLAST of CcUC04G068830 vs. ExPASy TrEMBL
Match: A0A059A6N3 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02613 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 4.1e-06
Identity = 51/118 (43.22%), Postives = 72/118 (61.02%), Query Frame = 0

Query: 29  DSDPPIRIPGGDIQSEIVMEVVIVRRSEIELRERGVGGVELEEIWTEDEPQEEDSNAEDD 88
           D D  +R+P G+++ E+V E   V   E+EL E  VG VEL+E+  EDEP++E    + D
Sbjct: 4   DPDAAVRVPDGEVELEVVAEG--VGGGEVELGELRVGDVELDEVGAEDEPEDEGEETDGD 63

Query: 89  DDGDDDLTDEVEDTAAAAVAEAAETAATAAAAVAAARAVVGLGGGRNGRAVVSSVEMG 147
             G+D++ DE+E+ AA A          A AA AAA AVVG+  G +G AVV +VE+G
Sbjct: 64  HHGEDEVEDELEEAAATA----------ADAAPAAAGAVVGVLLGGHGGAVVGAVEVG 109

BLAST of CcUC04G068830 vs. ExPASy TrEMBL
Match: A0A5N6QYV1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007610 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-06
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = 0

Query: 1   MPLVKLAQIHRTEPLTFVEGVNLNSVVVDSDPPIRIPGGDIQSEIVMEVVIVRRSEIELR 60
           +PLVK  +    E L  V  V+L++VVVD+D  + +P GD++ ++V+E V V   E+EL 
Sbjct: 73  VPLVKQRRNLDVESLALVVSVDLDAVVVDADALVGVPDGDVEGKVVVERV-VGGGEVELG 132

Query: 61  ERGVGGVELEEIWTEDEPQEEDS 84
           E+GVG  EL  +  E+EP++ED+
Sbjct: 133 EQGVGDAELHLVGAEEEPEDEDN 154

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA8516802.13.7e-0942.25hypothetical protein F0562_017088 [Nyssa sinensis][more]
CAD1817939.12.0e-0743.08unnamed protein product [Ananas comosus var. bracteatus][more]
KCW49000.18.6e-0643.22hypothetical protein EUGRSUZ_K02613 [Eucalyptus grandis][more]
KAE8021745.11.1e-0542.17hypothetical protein FH972_007610 [Carpinus fangiana][more]
KAF5473491.11.9e-0537.24hypothetical protein F2P56_010099 [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5J4ZGS41.8e-0942.25Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_017088 PE=4 SV=1[more]
A0A6V7NH649.9e-0843.08Uncharacterized protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS... [more]
A0A059A6N34.1e-0643.22Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K02613 PE=4 SV... [more]
A0A5N6QYV15.4e-0642.17Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007610 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 70..97
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G068830.1CcUC04G068830.1mRNA