CcUC04G068490 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G068490
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Small nuclear ribonucleoprotein G
Location	CicolChr04: 25264952 .. 25266205 (-)
RNA-Seq Expression	CcUC04G068490
Synteny	CcUC04G068490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTTTTCCATCTCTCTGACCTTTGTTCTCCGAAAAACCTCTTGACATCTCTTTCGTTCGTTCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAGTAAGGACATCTTTAATTTTACCTTGGTCATTGTGTTTTGTTTCGATTATTTCAACCATGTTTCATTCGGTCCTCATTTTCCCCCTTCCTTTTGCAGATACATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTCTTTATCCTTTTGGTTGTCGCATTTGTTTTCTCTGGCTCAGTTTAATTCTGGAAATGTTTGTTTTCTTTGAAGTTATGCCATCTGATTTGCAATTTCGTTTTCTATTGATTGGTGTGTATTTTATTGTGCACTGAAACAAAACAACAGTCTGTTTGTAATGTGAGGATCCTGAAGTTGCGTTGTCCGAGTCTAGGATTTAGGATTTAGTATTTACGTAACTGTTTGGAGACGAACGGAGGAAGGATTGGAACTTTAGCGTTAGATGATATAGTACTGAAGGTTGAATCTCTCTACCAAATTTAATGGTCATCTGCCATAGATTGAACATCAATATTTCAGTTACGGCATGTAAAATCGAGGGACTTCGAAATCTTGCATGTTGAATCTATGGGTATACAAATTGACGATGCTTCTGAATTGCATTTTGCAGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTAGAAGTGAATGGCAACGAGCAAACTGATATTGGCATGGTGGTGGGTCGCTGTTATTTGTGTTCTAATCTTTCTCAGCTTGCTTCAATTTTTATCACTGCAATAGTCAAGAATTGATCACCCTTTTTGGTTTTCATTTCAGGTGATTAGGGGCAATAGTGTAGTCACTGTTGAAGCACTTGAACCTGTAAACAGGATGCAGTGATTGTGAACTTATTCTGTTCGAAGTTGGTTCTATTCTTGCTGCTGATCTGTTTTATAGATTGAGTGAGTAAAACATTCGGAACTGTAGTATGTATAATTTTGGGATGTTATGGATTTTAGATGGACTTCTTGTATTCCATCATTCTGGACAGGCGGATTATAGTTCCAGCAATGGGGTTTCTGTATTATTATGGGATGGAGAGATTCGTTGCATTAGGTGAGACTTTTCTTACCAAACCTTTCATTCGGTCTCTGTTACAGCGCCAAGATCCAATTATATTGCAATCCTAG

mRNA sequence

TTTTTTTCCATCTCTCTGACCTTTGTTCTCCGAAAAACCTCTTGACATCTCTTTCGTTCGTTCTTCACCATGAGTAGGTCAGGACAGCCTCCGGATCTCAAAAAATACATGGACAAAAAGCTTCAGAGTAAGTTCTGTTCCTCACGAGCTTCTTTATCCTTTTGGTTGTCGCATTTGTTTTCTCTGGCTCAGTTTAATTCTGGAAATGTTTGTTTTCTTTGAAGTTATGCCATCTGATTTGCAATTTCGTTTTCTATTGATTGGTGTGTATTTTATTGTGCACTGAAACAAAACAACAGTCTGTTTGTAATGTGAGGATCCTGAAGTTGCGTTGTCCGAGTCTAGGATTTAGGATTTAGTATTTACGTAACTGTTTGGAGACGAACGGAGGAAGGATTGGAACTTTAGCGTTAGATGATATAGTACTGAAGGTTGAATCTCTCTACCAAATTTAATGGTCATCTGCCATAGATTGAACATCAATATTTCAGTTACGGCATGTAAAATCGAGGGACTTCGAAATCTTGCATGTTGAATCTATGGGTATACAAATTGACGATGCTTCTGAATTGCATTTTGCAGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTAGAAGTGAATGGCAACGAGCAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTAGTCACTGTTGAAGCACTTGAACCTATTGAGCGGATTATAGTTCCAGCAATGGGGTTTCTGTATTATTATGGGATGGAGAGATTCGTTGCATTAGGTGAGACTTTTCTTACCAAACCTTTCATTCGGTCTCTGTTACAGCGCCAAGATCCAATTATATTGCAATCCTAG

Coding sequence (CDS)

ATGGGTATACAAATTGACGATGCTTCTGAATTGCATTTTGCAGTAAAACTCAATGCTAATCGCTTGGTAATTGGAACTCTTCGTGGGTTTGACCAATTTATGAATCTAGTGGTTGACAACACCGTAGAAGTGAATGGCAACGAGCAAACTGATATTGGCATGGTGGTGATTAGGGGCAATAGTGTAGTCACTGTTGAAGCACTTGAACCTATTGAGCGGATTATAGTTCCAGCAATGGGGTTTCTGTATTATTATGGGATGGAGAGATTCGTTGCATTAGGTGAGACTTTTCTTACCAAACCTTTCATTCGGTCTCTGTTACAGCGCCAAGATCCAATTATATTGCAATCCTAG

Protein sequence

MGIQIDDASELHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIERIIVPAMGFLYYYGMERFVALGETFLTKPFIRSLLQRQDPIILQS

Homology

[Close]

BLAST of CcUC04G068490 vs. NCBI nr
Match: KAG8483844.1 (hypothetical protein CXB51_022598 [Gossypium anomalum])

HSP 1 Score: 114.4 bits (285), Expect = 6.7e-22
Identity = 64/99 (64.65%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 15  VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIERI 74
           +KLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNE+TDIGMVVIRGNSVVTVEALEP+ R+
Sbjct: 7   IKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVGRM 66

Query: 75  IVPAMGFLYYYGMERFVALGETFLTKPFIRSLLQRQDPI 114
            +   G    +   +FVALG T   K   R+   R   I
Sbjct: 67  HM--AGTFNKHHSAKFVALGLTITYKKAKRAEAVRNQSI 103

[Close]

BLAST of CcUC04G068490 vs. NCBI nr
Match: MBA0677325.1 (hypothetical protein [Gossypium aridum] >MBA0848750.1 hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 3  IQIDDASELHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSV 62
          + + ++  L  AVKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNE+TDIGMVVIRGNSV
Sbjct: 14 LNLKNSIMLKTAVKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSV 73

Query: 63 VTVEALEPIERI 75
          VTVEALEP+ R+
Sbjct: 74 VTVEALEPVGRM 85

[Close]

BLAST of CcUC04G068490 vs. NCBI nr
Match: MBA0830231.1 (hypothetical protein [Gossypium armourianum])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 13 FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIE 72
          FAVKLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNE+TDIGMVVIRGNSVVTVEALEP+ 
Sbjct: 5  FAVKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVG 64

Query: 73 RI 75
          R+
Sbjct: 65 RM 66

[Close]

BLAST of CcUC04G068490 vs. NCBI nr
Match: XP_038702079.1 (probable small nuclear ribonucleoprotein G isoform X1 [Tripterygium wilfordii])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 4   QIDDASELHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVV 63
           +I   S + +AVKLNANR+++GTLRGFDQFMNLVVDNTVEVNGNE+ DIGMVVIRGNSVV
Sbjct: 34  EIISLSCIFYAVKLNANRMIVGTLRGFDQFMNLVVDNTVEVNGNERNDIGMVVIRGNSVV 93

Query: 64  TVEALEPIER 74
           TVEALEP+ R
Sbjct: 94  TVEALEPVAR 103

[Close]

BLAST of CcUC04G068490 vs. NCBI nr
Match: XP_016499092.1 (PREDICTED: probable small nuclear ribonucleoprotein G isoform X1 [Nicotiana tabacum] >XP_016499094.1 PREDICTED: probable small nuclear ribonucleoprotein G isoform X1 [Nicotiana tabacum] >XP_018632545.1 probable small nuclear ribonucleoprotein G isoform X1 [Nicotiana tomentosiformis])

HSP 1 Score: 112.5 bits (280), Expect = 2.5e-21
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 8  ASELHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEA 67
          A+  H AVKLNANRLVIGTLRGFDQFMNLV+DNTVEVNGNE+ +IGMVVIRGNSVVT+EA
Sbjct: 26 ATSKHSAVKLNANRLVIGTLRGFDQFMNLVIDNTVEVNGNEKNEIGMVVIRGNSVVTIEA 85

Query: 68 LEPIER 74
          LEP+ R
Sbjct: 86 LEPVAR 91

[Close]

BLAST of CcUC04G068490 vs. ExPASy Swiss-Prot
Match: O82221 (Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At2g23930 PE=3 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-22
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIER 74
          +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN++TDIGMVVIRGNS+VTVEALEP+ R
Sbjct: 20 IKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGR 78

[Close]

BLAST of CcUC04G068490 vs. ExPASy Swiss-Prot
Match: P24715 (Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.7e-21
Identity = 48/57 (84.21%), Postives = 54/57 (94.74%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPI 72
          + L ANR+++GTLRGFDQFMNLVVDNTVEVNGNE+ DIGMVVIRGNSVVTVEALEP+
Sbjct: 20 INLKANRMIVGTLRGFDQFMNLVVDNTVEVNGNEKNDIGMVVIRGNSVVTVEALEPV 76

[Close]

BLAST of CcUC04G068490 vs. ExPASy Swiss-Prot
Match: Q9VXE0 (Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10
Identity = 35/58 (60.34%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTV-EVNGNEQTDIGMVVIRGNSVVTVEALEPI 72
          +KLN  R V G LRGFD FMN+V+D+TV E   N + +IGMVVIRGNS+V VEAL+ +
Sbjct: 19 LKLNGGRAVTGILRGFDPFMNVVLDDTVEECKDNTKNNIGMVVIRGNSIVMVEALDRV 76

[Close]

BLAST of CcUC04G068490 vs. ExPASy Swiss-Prot
Match: Q3ZBL0 (Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 14 AVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEQTDIGMVVIRGNSVVTVEALEPI 72
          ++KLN  R V G LRGFD FMNLV+D  VE+    +Q +IGMVVIRGNS++ +EALE +
Sbjct: 18 SLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of CcUC04G068490 vs. ExPASy Swiss-Prot
Match: P62308 (Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10
Identity = 34/59 (57.63%), Postives = 44/59 (74.58%), Query Frame = 0


Query: 14 AVKLNANRLVIGTLRGFDQFMNLVVDNTVEV-NGNEQTDIGMVVIRGNSVVTVEALEPI 72
          ++KLN  R V G LRGFD FMNLV+D  VE+    +Q +IGMVVIRGNS++ +EALE +
Sbjct: 18 SLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76

[Close]

BLAST of CcUC04G068490 vs. ExPASy TrEMBL
Match: A0A7J9J770 (Small nuclear ribonucleoprotein G OS=Gossypium armourianum OX=34283 GN=Goarm_014775 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22
Identity = 56/62 (90.32%), Postives = 61/62 (98.39%), Query Frame = 0


Query: 13 FAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIE 72
          FAVKLNANR+V+GTLRGFDQFMNLVVDNTVEVNGNE+TDIGMVVIRGNSVVTVEALEP+ 
Sbjct: 5  FAVKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEPVG 64

Query: 73 RI 75
          R+
Sbjct: 65 RM 66

[Close]

BLAST of CcUC04G068490 vs. ExPASy TrEMBL
Match: A0A7J9KQS9 (Sm domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_006613 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 3  IQIDDASELHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSV 62
          + + ++  L  AVKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNE+TDIGMVVIRGNSV
Sbjct: 14 LNLKNSIMLKTAVKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSV 73

Query: 63 VTVEALEPIERI 75
          VTVEALEP+ R+
Sbjct: 74 VTVEALEPVGRM 85

[Close]

BLAST of CcUC04G068490 vs. ExPASy TrEMBL
Match: A0A7J8WQK3 (Sm domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_018740 PE=3 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.5e-22
Identity = 57/72 (79.17%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 3  IQIDDASELHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSV 62
          + + ++  L  AVKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNE+TDIGMVVIRGNSV
Sbjct: 14 LNLKNSIMLKTAVKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSV 73

Query: 63 VTVEALEPIERI 75
          VTVEALEP+ R+
Sbjct: 74 VTVEALEPVGRM 85

[Close]

BLAST of CcUC04G068490 vs. ExPASy TrEMBL
Match: A0A1S4CDR1 (Small nuclear ribonucleoprotein G OS=Nicotiana tabacum OX=4097 GN=LOC107817742 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 55/66 (83.33%), Postives = 61/66 (92.42%), Query Frame = 0


Query: 8  ASELHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEA 67
          A+  H AVKLNANRLVIGTLRGFDQFMNLV+DNTVEVNGNE+ +IGMVVIRGNSVVT+EA
Sbjct: 26 ATSKHSAVKLNANRLVIGTLRGFDQFMNLVIDNTVEVNGNEKNEIGMVVIRGNSVVTIEA 85

Query: 68 LEPIER 74
          LEP+ R
Sbjct: 86 LEPVAR 91

[Close]

BLAST of CcUC04G068490 vs. ExPASy TrEMBL
Match: A0A7J9DIL2 (Sm domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_023290 PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 11 LHFAVKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEP 70
          L  AVKLNANRLV+GTLRGFDQFMNLVVDNTVEVNGNE+TDIGMVVIRGNSVVTVEALEP
Sbjct: 2  LKTAVKLNANRLVVGTLRGFDQFMNLVVDNTVEVNGNEKTDIGMVVIRGNSVVTVEALEP 61

Query: 71 IERI 75
          + R+
Sbjct: 62 VGRM 65

[Close]

BLAST of CcUC04G068490 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-23
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIER 74
          +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN++TDIGMVVIRGNS+VTVEALEP+ R
Sbjct: 20 IKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGR 78

[Close]

BLAST of CcUC04G068490 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-23
Identity = 51/59 (86.44%), Postives = 57/59 (96.61%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIER 74
          +KLNANR+V GTLRGFDQFMNLVVDNTVEVNGN++TDIGMVVIRGNS+VTVEALEP+ R
Sbjct: 7  IKLNANRMVTGTLRGFDQFMNLVVDNTVEVNGNDKTDIGMVVIRGNSIVTVEALEPVGR 65

[Close]

BLAST of CcUC04G068490 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-23
Identity = 50/59 (84.75%), Postives = 58/59 (98.31%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTVEVNGNEQTDIGMVVIRGNSVVTVEALEPIER 74
          +KLNANR+V+GTLRGFDQFMNLVVDNTVEVNG+++TDIGMVVIRGNS+VTVEALEP+ R
Sbjct: 20 IKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDKTDIGMVVIRGNSIVTVEALEPVGR 78

[Close]

BLAST of CcUC04G068490 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTVE--------VNGNEQT-DIGMVVIRGNSVVTV 74
          VKL   R V GTL+G+DQ +NLV+D  VE        +   +QT  +G++V RG +V+ V
Sbjct: 21 VKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80

Query: 75 EALEPIERIIVP 78
             +  E I  P
Sbjct: 81 SPTDGTEEIANP 92

[Close]

BLAST of CcUC04G068490 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 45.4 bits (106), Expect = 3.6e-05
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 15 VKLNANRLVIGTLRGFDQFMNLVVDNTVE--------VNGNEQT-DIGMVVIRGNSVVTV 74
          VKL   R V GTL+G+DQ +NLV+D  VE        +   +QT  +G++V RG +V+ V
Sbjct: 21 VKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLV 80

Query: 75 EALEPIERIIVP 78
             +  E I  P
Sbjct: 81 SPTDGTEEIANP 92

The following BLAST results are available for this feature:

BLAST of CcUC04G068490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG8483844.1	6.7e-22	64.65	hypothetical protein CXB51_022598 [Gossypium anomalum]	[more]
MBA0677325.1	1.1e-21	79.17	hypothetical protein [Gossypium aridum] >MBA0848750.1 hypothetical protein [Goss...	[more]
MBA0830231.1	1.1e-21	90.32	hypothetical protein [Gossypium armourianum]	[more]
XP_038702079.1	2.5e-21	78.57	probable small nuclear ribonucleoprotein G isoform X1 [Tripterygium wilfordii]	[more]
XP_016499092.1	2.5e-21	83.33	PREDICTED: probable small nuclear ribonucleoprotein G isoform X1 [Nicotiana taba...	[more]

BLAST of CcUC04G068490 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82221	2.4e-22	86.44	Probable small nuclear ribonucleoprotein G OS=Arabidopsis thaliana OX=3702 GN=At...	[more]
P24715	7.7e-21	84.21	Probable small nuclear ribonucleoprotein G OS=Medicago sativa OX=3879 GN=C29 PE=...	[more]
Q9VXE0	2.1e-10	60.34	Probable small nuclear ribonucleoprotein G OS=Drosophila melanogaster OX=7227 GN...	[more]
Q3ZBL0	3.6e-10	57.63	Small nuclear ribonucleoprotein G OS=Bos taurus OX=9913 GN=SNRPG PE=3 SV=1	[more]
P62308	3.6e-10	57.63	Small nuclear ribonucleoprotein G OS=Homo sapiens OX=9606 GN=SNRPG PE=1 SV=1	[more]

BLAST of CcUC04G068490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9J770	5.5e-22	90.32	Small nuclear ribonucleoprotein G OS=Gossypium armourianum OX=34283 GN=Goarm_014...	[more]
A0A7J9KQS9	5.5e-22	79.17	Sm domain-containing protein OS=Gossypium schwendimanii OX=34291 GN=Goshw_006613...	[more]
A0A7J8WQK3	5.5e-22	79.17	Sm domain-containing protein OS=Gossypium aridum OX=34290 GN=Goari_018740 PE=3 S...	[more]
A0A1S4CDR1	1.2e-21	83.33	Small nuclear ribonucleoprotein G OS=Nicotiana tabacum OX=4097 GN=LOC107817742 P...	[more]
A0A7J9DIL2	1.2e-21	89.06	Sm domain-containing protein OS=Gossypium trilobum OX=34281 GN=Gotri_023290 PE=3...	[more]

BLAST of CcUC04G068490 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23930.1	1.7e-23	86.44	probable small nuclear ribonucleoprotein G	[more]
AT2G23930.2	1.7e-23	86.44	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	2.2e-23	84.75	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.2	3.6e-05	38.89	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.1	3.6e-05	38.89	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 3..67 e-value: 6.9E-14 score: 62.1
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 15..66 e-value: 7.5E-17 score: 60.8
None	No IPR available	GENE3D	2.30.30.100		coord: 3..71 e-value: 5.9E-18 score: 66.3
None	No IPR available	PANTHER	PTHR10553:SF29	SMALL NUCLEAR RIBONUCLEOPROTEIN G	coord: 14..73
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 14..73
IPR034098	Small nuclear ribonucleoprotein G	CDD	cd01719	Sm_G	coord: 15..69 e-value: 1.83028E-30 score: 101.825
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 15..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G068490.1	CcUC04G068490.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000387	spliceosomal snRNP assembly
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:0043186	P granule
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0034719	SMN-Sm protein complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005685	U1 snRNP
cellular_component	GO:0005686	U2 snRNP
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005687	U4 snRNP
cellular_component	GO:0005682	U5 snRNP
cellular_component	GO:0005681	spliceosomal complex
molecular_function	GO:0003723	RNA binding