CcUC04G067740 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G067740
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Tonoplast intrinsic protein
Location	CicolChr04: 24435912 .. 24436494 (+)
RNA-Seq Expression	CcUC04G067740
Synteny	CcUC04G067740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGGATTTGTCATATTGTGACAACATCATACAGTAATATATTCTTTTTCTACTTTAATTTTAAGAGATTTGCTTTTACTTCCTAGATAAAAAAAAATTACATGGTTTTGTCTTTTTTTTTTTATCACAATTTTTTTTTATCTCATTAAGATATTAATAAATTTAGGCAAAACTCACCAAGCCGGTGACGAATTTAAGGAGCAAGCAAGCGACAACAGATCCAAGGAGTTGAGCAATCCAGTAGATGATGCCACGTAGGAGGGTGATGTTACCACCAACGAAGGCACCGAAGGTAACGGCGGGGTTGACATGGCCACCAGAGATGTTAGCGCCAACGGAGACGGCAACAAAAAGGGCAAAGGCGTGGGCGATGGAGGCGGAGATGAGACCGGCGGGAGTGGTGGCGCCGCCTTCGGTAAGCTTACTGAAGGCTATGCCGGAACCTTGGCCAGCAAAAACAAAGATTAAGGTGGAAATGAACTCAGCCAACCCAGCCTTCAAAGCATCTGGATGTGTAGCCTCTTCGGGCCTTCCAATTGCAATGTTACGGATCGGCATGGCTATAGCTAGAGAGCTCTAA

mRNA sequence

ATGGGCAAAACTCACCAAGCCGGTGACGAATTTAAGGAGCAAGCAAGCGACAACAGATCCAAGGAGTTGAGCAATCCAGTAGATGATGCCACGAGGGTGATGTTACCACCAACGAAGGCACCGAAGGTAACGGCGGGGTTGACATGGCCACCAGAGATGTTAGCGCCAACGGAGACGGCAACAAAAAGGGCAAAGGCGTGGGCGATGGAGGCGGAGATGAGACCGGCGGGAGTGGTGGCGCCGCCTTCGGTAAGCTTACTGAAGGCTATGCCGGAACCTTGGCCAGCAAAAACAAAGATTAAGGTGGAAATGAACTCAGCCAACCCAGCCTTCAAAGCATCTGGATGTGTAGCCTCTTCGGGCCTTCCAATTGCAATGTTACGGATCGGCATGGCTATAGCTAGAGAGCTCTAA

Coding sequence (CDS)

ATGGGCAAAACTCACCAAGCCGGTGACGAATTTAAGGAGCAAGCAAGCGACAACAGATCCAAGGAGTTGAGCAATCCAGTAGATGATGCCACGAGGGTGATGTTACCACCAACGAAGGCACCGAAGGTAACGGCGGGGTTGACATGGCCACCAGAGATGTTAGCGCCAACGGAGACGGCAACAAAAAGGGCAAAGGCGTGGGCGATGGAGGCGGAGATGAGACCGGCGGGAGTGGTGGCGCCGCCTTCGGTAAGCTTACTGAAGGCTATGCCGGAACCTTGGCCAGCAAAAACAAAGATTAAGGTGGAAATGAACTCAGCCAACCCAGCCTTCAAAGCATCTGGATGTGTAGCCTCTTCGGGCCTTCCAATTGCAATGTTACGGATCGGCATGGCTATAGCTAGAGAGCTCTAA

Protein sequence

MGKTHQAGDEFKEQASDNRSKELSNPVDDATRVMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSLLKAMPEPWPAKTKIKVEMNSANPAFKASGCVASSGLPIAMLRIGMAIAREL

Homology

[Close]

BLAST of CcUC04G067740 vs. NCBI nr
Match: RHN48549.1 (hypothetical protein MtrunA17_Chr7g0264971 [Medicago truncatula])

HSP 1 Score: 134.4 bits (337), Expect = 7.3e-28
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 34  MLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSLLKAMPEP 93
           MLPPTKAPKVTAGLT PPEMLAPTETATKRA AWAMEAEMRPAGV AP  VSLL A+PEP
Sbjct: 1   MLPPTKAPKVTAGLTCPPEMLAPTETATKRANAWAMEAEMRPAGVAAPSLVSLLYAIPEP 60

Query: 94  WPAKTKIKVEMNSANPAFKASG 116
            PAKTK+KVEMNSA PAFK SG
Sbjct: 61  EPAKTKMKVEMNSAKPAFKVSG 82

[Close]

BLAST of CcUC04G067740 vs. NCBI nr
Match: AFK44239.1 (unknown [Medicago truncatula])

HSP 1 Score: 114.0 bits (284), Expect = 1.0e-21
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 33  VMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSLLKAMPE 92
           VM PP  APKVTAGLT PPEMLAPTETATK A A   +A   PAGV AP  VSLL AMPE
Sbjct: 3   VMCPPMNAPKVTAGLTCPPEMLAPTETATKSANACDSDAATNPAGVAAPLFVSLLYAMPE 62

Query: 93  PWPAKTKIKVEMNSANPAFKASGCVASSGLPIAMLRIGMAI 134
           P PAKTK+ +EMNSA+ A  AS    S G PIA+L IG+ +
Sbjct: 63  PSPAKTKMSIEMNSASAALSASALPNSEGFPIAILEIGIVL 103

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BLAST of CcUC04G067740 vs. NCBI nr
Match: RWW34864.1 (hypothetical protein GW17_00000338 [Ensete ventricosum] >RZR79929.1 hypothetical protein BHM03_00005807 [Ensete ventricosum])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  VMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSL 87
           VMLPP KAPKVTAGLTWPPEMLAPT TATKR   WA +A   PAGV  P SVSL
Sbjct: 180 VMLPPRKAPKVTAGLTWPPEMLAPTATATKRPNPWAKDAATTPAGVAEPSSVSL 233

[Close]

BLAST of CcUC04G067740 vs. NCBI nr
Match: RWW66510.1 (hypothetical protein BHE74_00026103 [Ensete ventricosum])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  VMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSL 87
           VMLPP KAPKVTAGLTWPPEMLAPT TATKR   WA +A   PAGV  P SVSL
Sbjct: 180 VMLPPRKAPKVTAGLTWPPEMLAPTATATKRPNPWAKDAATTPAGVAEPSSVSL 233

[Close]

BLAST of CcUC04G067740 vs. NCBI nr
Match: RRT81834.1 (hypothetical protein B296_00019231 [Ensete ventricosum])

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-11
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  VMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSL 87
           VMLPP KAPKVTAGLTWPPEMLAPT TATKR   WA +A   PAGV  P SVSL
Sbjct: 180 VMLPPRKAPKVTAGLTWPPEMLAPTATATKRPNPWAKDAATTPAGVAEPSSVSL 233

[Close]

BLAST of CcUC04G067740 vs. ExPASy TrEMBL
Match: A0A2P2J5B9 (Tonoplast intrinsic protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.8e-33
Identity = 78/102 (76.47%), Postives = 88/102 (86.27%), Query Frame = 0


Query: 32  RVMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSLLKAMP 91
           +VM PP KAP VTAGLTWPPEMLAPTETATKR KAWA++AE+RPAGVV P SVSLLKA+P
Sbjct: 5   KVMFPPMKAPNVTAGLTWPPEMLAPTETATKRPKAWAIDAEIRPAGVVEPLSVSLLKAIP 64

Query: 92  EPWPAKTKIKVEMNSANPAFKASGCVASSGLPIAMLRIGMAI 134
           +PWPAKTKI+VEMNSA+ A  ASG VAS G P+AM RIGM +
Sbjct: 65  DPWPAKTKIRVEMNSASAALHASGWVASWGWPMAMFRIGMFV 106

[Close]

BLAST of CcUC04G067740 vs. ExPASy TrEMBL
Match: A0A396H5J5 (Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0264971 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.5e-28
Identity = 71/82 (86.59%), Postives = 73/82 (89.02%), Query Frame = 0


Query: 34  MLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSLLKAMPEP 93
           MLPPTKAPKVTAGLT PPEMLAPTETATKRA AWAMEAEMRPAGV AP  VSLL A+PEP
Sbjct: 1   MLPPTKAPKVTAGLTCPPEMLAPTETATKRANAWAMEAEMRPAGVAAPSLVSLLYAIPEP 60

Query: 94  WPAKTKIKVEMNSANPAFKASG 116
            PAKTK+KVEMNSA PAFK SG
Sbjct: 61  EPAKTKMKVEMNSAKPAFKVSG 82

[Close]

BLAST of CcUC04G067740 vs. ExPASy TrEMBL
Match: I3SVE7 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 4.9e-22
Identity = 65/101 (64.36%), Postives = 72/101 (71.29%), Query Frame = 0


Query: 33  VMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSLLKAMPE 92
           VM PP  APKVTAGLT PPEMLAPTETATK A A   +A   PAGV AP  VSLL AMPE
Sbjct: 3   VMCPPMNAPKVTAGLTCPPEMLAPTETATKSANACDSDAATNPAGVAAPLFVSLLYAMPE 62

Query: 93  PWPAKTKIKVEMNSANPAFKASGCVASSGLPIAMLRIGMAI 134
           P PAKTK+ +EMNSA+ A  AS    S G PIA+L IG+ +
Sbjct: 63  PSPAKTKMSIEMNSASAALSASALPNSEGFPIAILEIGIVL 103

[Close]

BLAST of CcUC04G067740 vs. ExPASy TrEMBL
Match: A0A427AZX4 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00019231 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  VMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSL 87
           VMLPP KAPKVTAGLTWPPEMLAPT TATKR   WA +A   PAGV  P SVSL
Sbjct: 180 VMLPPRKAPKVTAGLTWPPEMLAPTATATKRPNPWAKDAATTPAGVAEPSSVSL 233

[Close]

BLAST of CcUC04G067740 vs. ExPASy TrEMBL
Match: A0A444GJ13 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00000338 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 41/54 (75.93%), Postives = 42/54 (77.78%), Query Frame = 0


Query: 33  VMLPPTKAPKVTAGLTWPPEMLAPTETATKRAKAWAMEAEMRPAGVVAPPSVSL 87
           VMLPP KAPKVTAGLTWPPEMLAPT TATKR   WA +A   PAGV  P SVSL
Sbjct: 180 VMLPPRKAPKVTAGLTWPPEMLAPTATATKRPNPWAKDAATTPAGVAEPSSVSL 233

The following BLAST results are available for this feature:

BLAST of CcUC04G067740 vs. NCBI nr


Match Name	E-value	Identity	Description
RHN48549.1	7.3e-28	86.59	hypothetical protein MtrunA17_Chr7g0264971 [Medicago truncatula]	[more]
AFK44239.1	1.0e-21	64.36	unknown [Medicago truncatula]	[more]
RWW34864.1	2.1e-11	75.93	hypothetical protein GW17_00000338 [Ensete ventricosum] >RZR79929.1 hypothetical...	[more]
RWW66510.1	2.1e-11	75.93	hypothetical protein BHE74_00026103 [Ensete ventricosum]	[more]
RRT81834.1	2.1e-11	75.93	hypothetical protein B296_00019231 [Ensete ventricosum]	[more]

BLAST of CcUC04G067740 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G067740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P2J5B9	2.8e-33	76.47	Tonoplast intrinsic protein OS=Rhizophora mucronata OX=61149 PE=4 SV=1	[more]
A0A396H5J5	3.5e-28	86.59	Uncharacterized protein OS=Medicago truncatula OX=3880 GN=MtrunA17_Chr7g0264971 ...	[more]
I3SVE7	4.9e-22	64.36	Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1	[more]
A0A427AZX4	1.0e-11	75.93	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00019231 PE=4 SV=1	[more]
A0A444GJ13	1.0e-11	75.93	Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=GW17_00000338 PE=4 SV=1	[more]

BLAST of CcUC04G067740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G067740.1	CcUC04G067740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane