CcUC04G066530 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G066530
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Glycine rich RNA binding protein
Location	CicolChr04: 23453594 .. 23455503 (+)
RNA-Seq Expression	CcUC04G066530
Synteny	CcUC04G066530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACCCTAACCACTGATTATCTCTCCGTCGCAGTGGTTTTCTCTTTTTAGTCGGCCGATCGAATTCGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTACGTCTCACAGAAAAATAAAAAACAGAGAATCATCTTGTGACGCCTTTCTTCTTATTTGGATTATTGAGAATGATTCGGAAATTTGGTAATGGAATCAATTTTCTGTTTGGATGCTGATTTTTTTTTTTTGAAATTTTTGGTAATGGGATCGATTTTCGGAGCACTAAATGCGATCCAGTTAATCAGCGATTCTTTGTTCTGTTGCATTCCTTTTATTTCTGGTCCTTTTCTTCGATTGGATGCGTCTTTTCCTATTTGCATACATGAAATTACTTCACTCTTCAGTGGTGGGGATTGTTCTAGCGTAGGAAATTAGAAATTTATTTCGATCTTAATAGTAGTTATCATTTATCAATACGTAGATTTGTGTGCCTGCTTCATAGCTTAAGGACATCACAAGTTCCAAGAAATATTTGCTAACTATTAGAACACAAGGACATCACAAGTATACTCTCGTACAACTTATAGAACATATCCTGTTCAGGTAGGGTCGTAAGAATGCTTTGCTAATTCATTTCTTATGCGACACGATATGCCCGTTGCATTCAAAGGTTAGAATGAAGGGAGTAGGTACCATGGGAGTACTAAAATTTCCCCCTCCCCCCACCACAAAAAAATGCATTGATAAACCTTCTCATTTGCTAAAATTCATGAGACAGCACCCTCAATTCCTACATTTTCTATTGACAATTTAACACATTATTAAGTGGTATACATCATTTTATTTCATGGGCCTAGACCATTCTTAAATGCTTATGTTATGGAAGATAATGGATGAAGGTAGTATGAAAATAGTAGTACTAGAATTGTTCTTGTTGTAGTTGATATTAATGGACATGTGATGTTTTTCATAATGTAATATTCTTTATGAATCCAAAAATTGTAGAATATGGAAACAAATAACTTTCATTAGCATAAGGTTGATTAATTGCTGAACCACGATGAACTGAACTGTTTGATCTGTTTTGGATTGGATATGTCTTGAGAAAGTCTCATTCCTATAAAATGAACAGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGCCAGCTTGTAGAAGGTTTAATACTCTCTCTCCTTCTCTCCAATTTACAATTCTATGAACATTTGTCGCAGAGTGCAACATGATGACATTGCCTCAACATTTGTACAGCAAAGGTTATAACCGACAGGGCGACGGGAAGATCAAAAGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGATTACTTGCAAAATATACGACATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTTTGATGTATGTTCATCATCCAAGGGTACTATAGGTAAAATTTATGAGACAGCACCCTCAAGGGAGCCTCAAAATTGCCAGAAAGAGGGTATTTTTCTGTTATACGTATGGATTTGGATTTAGAAAAGTATTTACTGACCTTAGGTTTATTATTCATATTTTAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTTTTACATCTAGTTATTCTATTTTGATCTCTAATTTTC

mRNA sequence

AAAACCCTAACCACTGATTATCTCTCCGTCGCAGTGGTTTTCTCTTTTTAGTCGGCCGATCGAATTCGATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGCCAGCTTGTAGAAGCAAAGGTTATAACCGACAGGGCGACGGGAAGATCAAAAGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGATTACTTGCAAAATATACGACATCTCATAGCATTTGGTCATTTTTTCCAATTGCATATGGTTGAGTTTGATGTATGTTCATCATCCAAGGGTACTATAGGTAAAATTTATGAGACAGCACCCTCAAGGGAGCCTCAAAATTGCCAGAAAGAGGGTATTTTTCTGTTATACGTATGGATTTGGATTTAGAAAAGTATTTACTGACCTTAGGTTTATTATTCATATTTTAATTCTTAACTTCTTATATGTATTTTGTTTTAGTTTTTACATCTAGTTATTCTATTTTGATCTCTAATTTTC

Coding sequence (CDS)

ATGGCTTTCTTCTCCACCGTAAGGCGCGTTCTCAATGGATCTTCTTCTTCTTCTTCCTCCATTTTACGATCCCAGTGGACTGCCGTTCGTCTCAGCTCAACTCTCACATCCCCAAAGCTCTTCATTAGTGGTCTTTCAAGATTAACAACAGATGAGAAGCTCCAGGAAGCCTTTTCTTCATTTGGCCAGCTTGTAGAAGCAAAGGTTATAACCGACAGGGCGACGGGAAGATCAAAAGGATTCGGCTTTGTAACCTACAGTACGATAGAAGAGGCTGAGAAAGCTAGAGAAGGAATGAATGCCAAGTTTCTGGATGGATGGGTTATTTTTGTTGATCCTGCCAAACCCAGGGAGCCTAGGCCACCTCCACAGCCTCAATCTGAGACCTCTGAATTTGGTATCAGAACAAACAAGACAATTGGTTGGTGTGGATGA

Protein sequence

MAFFSTVRRVLNGSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETSEFGIRTNKTIGWCG

Homology

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BLAST of CcUC04G066530 vs. NCBI nr
Match: XP_022143719.1 (organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia])

HSP 1 Score: 268.1 bits (684), Expect = 4.5e-68
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSS-SSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVLNGSSSS +SSIL+SQWT +RLSSTLTSPKLFISGLSRLTTDEKLQEAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CcUC04G066530 vs. NCBI nr
Match: XP_031739912.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8649523.1 hypothetical protein Csa_018111 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 7.6e-68
Identity = 137/146 (93.84%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MAFFSTVRRVLNG--SSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAF 60
           MAFFSTVRRVLNG  SSSSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+EAF
Sbjct: 1   MAFFSTVRRVLNGSSSSSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAF 60

Query: 61  SSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPRE 120
           SSFGQLV+AKV+TDRATGRSKGF FVTYSTI+EAEKARE MNAKFLDGWVIFVDPAKPRE
Sbjct: 61  SSFGQLVDAKVVTDRATGRSKGFAFVTYSTIDEAEKAREEMNAKFLDGWVIFVDPAKPRE 120

Query: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 145
           PRPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 PRPPPQPQSETSEFGIRTNKTIGWCG 146

[Close]

BLAST of CcUC04G066530 vs. NCBI nr
Match: XP_022972736.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima])

HSP 1 Score: 264.6 bits (675), Expect = 4.9e-67
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSS 60
           MAFFSTVRRVLNG SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+S
Sbjct: 1   MAFFSTVRRVLNG-SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTS 60

Query: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120
           FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR
Sbjct: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120

Query: 121 PPPQPQ---SETSEFGIRTNKTIGWCG 145
           PPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of CcUC04G066530 vs. NCBI nr
Match: XP_008447620.1 (PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo])

HSP 1 Score: 264.6 bits (675), Expect = 4.9e-67
Identity = 135/145 (93.10%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSS-SSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAFFSTVRRVL+GSS SSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CcUC04G066530 vs. NCBI nr
Match: XP_023517167.1 (organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 6.4e-67
Identity = 139/146 (95.21%), Postives = 142/146 (97.26%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSS 60
           MAFFSTVRRVLNG SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+S
Sbjct: 1   MAFFSTVRRVLNG-SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTS 60

Query: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120
           FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR
Sbjct: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120

Query: 121 -PPPQPQS-ETSEFGIRTNKTIGWCG 145
            PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CcUC04G066530 vs. ExPASy Swiss-Prot
Match: Q9FIU6 (Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=ORRM2 PE=1 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-23
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 37  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 96
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 97  EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 131
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

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BLAST of CcUC04G066530 vs. ExPASy Swiss-Prot
Match: Q9FX45 (Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=ORRM6 PE=1 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 1.4e-16
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 32  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEE 91
           SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T EE
Sbjct: 71  SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130

Query: 92  AEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQPQSETSEF 133
           A KA +GM+ KFLDG VIFV+ AK R         R  P+PQS+   F
Sbjct: 131 AMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of CcUC04G066530 vs. ExPASy Swiss-Prot
Match: Q9FFZ6 (Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S-RBP11 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.4e-16
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 39  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 98
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 99  MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 126
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of CcUC04G066530 vs. ExPASy Swiss-Prot
Match: Q9FZ84 (Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG6 PE=2 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.6e-15
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 34  TLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 93
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 94  KAREGMNAKFLDGWVIFVDPA 115
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

[Close]

BLAST of CcUC04G066530 vs. ExPASy Swiss-Prot
Match: Q6YWP9 (Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=ORRM1 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.5e-15
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 0


Query: 39  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 98
           +LF++GLS  T+++ L+ AF  FG+LVE K+I D+ + RSKG+ F+ Y+T E    A + 
Sbjct: 296 RLFVTGLSFYTSEKTLRAAFEPFGELVEVKIIMDKISKRSKGYAFIEYTTEEAGGAALKA 355

Query: 99  MNAKFLDGWVIFVDPAKPR-EPRPPPQPQSETSEFGIRTNKTIG 142
           MN + ++GW+I VD AK R   R PP   S  S   +R+    G
Sbjct: 356 MNGQIINGWMIVVDVAKHRSRDRQPPYSASGRSNQVLRSRYHTG 399

[Close]

BLAST of CcUC04G066530 vs. ExPASy TrEMBL
Match: A0A6J1CQ59 (organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111013559 PE=4 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 2.2e-68
Identity = 136/145 (93.79%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSS-SSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAF S+VRRVLNGSSSS +SSIL+SQWT +RLSSTLTSPKLFISGLSRLTTDEKLQEAFS
Sbjct: 1   MAFLSSVRRVLNGSSSSAASSILKSQWTTLRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLVEAKVITDRATGRSKGFGFVTY+TIE+AEKAREGMNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVEAKVITDRATGRSKGFGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CcUC04G066530 vs. ExPASy TrEMBL
Match: A0A6J1I6S8 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111471250 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.4e-67
Identity = 137/147 (93.20%), Postives = 141/147 (95.92%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSS 60
           MAFFSTVRRVLNG SSSSSS+LRSQWT+ RLSSTLTSPKLFISGLSRLTTDEKLQEAF+S
Sbjct: 1   MAFFSTVRRVLNG-SSSSSSVLRSQWTSFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTS 60

Query: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120
           FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR
Sbjct: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120

Query: 121 PPPQPQ---SETSEFGIRTNKTIGWCG 145
           PPP PQ   +ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPPQPQSAETSEFGIRTNKTIGWCG 146

[Close]

BLAST of CcUC04G066530 vs. ExPASy TrEMBL
Match: A0A1S3BHV3 (glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC103490031 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.4e-67
Identity = 135/145 (93.10%), Postives = 141/145 (97.24%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSS-SSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFS 60
           MAFFSTVRRVL+GSS SSSSSILRSQW AVRLSSTLTSPKLFISGLSRLTTDEKL+EAFS
Sbjct: 1   MAFFSTVRRVLSGSSPSSSSSILRSQWNAVRLSSTLTSPKLFISGLSRLTTDEKLREAFS 60

Query: 61  SFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREP 120
           SFGQLV+AKV+TDRATGRSKGF FVTYSTIEEAE+AR+ MNAKFLDGWVIFVDPAKPREP
Sbjct: 61  SFGQLVDAKVVTDRATGRSKGFAFVTYSTIEEAERARQEMNAKFLDGWVIFVDPAKPREP 120

Query: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145
           RPPPQPQSETSEFGIRTNKTIGWCG
Sbjct: 121 RPPPQPQSETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CcUC04G066530 vs. ExPASy TrEMBL
Match: A0A6J1HDN1 (organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111463207 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 4.1e-67
Identity = 139/146 (95.21%), Postives = 141/146 (96.58%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSS 60
           MAFFSTVRRVLNG SSSSSS+LRSQWT  RLSSTLTSPKLFISGLSRLTTDEKLQEAF+S
Sbjct: 1   MAFFSTVRRVLNG-SSSSSSVLRSQWTCFRLSSTLTSPKLFISGLSRLTTDEKLQEAFTS 60

Query: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120
           FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR
Sbjct: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120

Query: 121 -PPPQPQS-ETSEFGIRTNKTIGWCG 145
            PPPQPQS ETSEFGIRTNKTIGWCG
Sbjct: 121 PPPPQPQSAETSEFGIRTNKTIGWCG 145

[Close]

BLAST of CcUC04G066530 vs. ExPASy TrEMBL
Match: A0A7N2LNA5 (RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 9.7e-61
Identity = 118/144 (81.94%), Postives = 133/144 (92.36%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSS 60
           MAF S +RRVL G SS++SSIL+S +T++R ++TLTSPKLFISGLSRLTTD+KLQEAFS 
Sbjct: 1   MAFVSGIRRVLGGGSSTASSILQSHYTSIRFNTTLTSPKLFISGLSRLTTDQKLQEAFSP 60

Query: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120
           FGQLV+AKVITDRATGRSKGFGFV+Y+TIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR
Sbjct: 61  FGQLVDAKVITDRATGRSKGFGFVSYATIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120

Query: 121 PPPQPQSETSEFGIRTNKTIGWCG 145
           PPPQPQ E SE G RTN+T+GWCG
Sbjct: 121 PPPQPQQEPSETGFRTNRTVGWCG 144

[Close]

BLAST of CcUC04G066530 vs. TAIR 10
Match: AT2G37510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 190.7 bits (483), Expect = 8.4e-49
Identity = 101/145 (69.66%), Postives = 118/145 (81.38%), Query Frame = 0


Query: 1   MAFFSTVRRVLNGSSSSSSSILRSQWTAVRLSSTLTSPKLFISGLSRLTTDEKLQEAFSS 60
           MAF S+ RR++ G    SSS+L S    VR  STLTSP+LF+SGLSRLTT+EKLQ+AF+S
Sbjct: 1   MAFVSSFRRLVAG----SSSLLSSPSLCVRRCSTLTSPRLFVSGLSRLTTNEKLQDAFAS 60

Query: 61  FGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREGMNAKFLDGWVIFVDPAKPREPR 120
           FGQLV+A+VITDR +GRSKGFGFVTY+TIE+AEKA+  MNAKFLDGWVIFVDPA+PREPR
Sbjct: 61  FGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPR 120

Query: 121 PPPQ--PQSETSEFGIRTNKTIGWC 144
            P Q  P   +SE G  TNKTIGWC
Sbjct: 121 RPLQQEPLRPSSESGFTTNKTIGWC 141

[Close]

BLAST of CcUC04G066530 vs. TAIR 10
Match: AT5G54580.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 110.2 bits (274), Expect = 1.4e-24
Identity = 52/94 (55.32%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 37  SPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAR 96
           S  LF+SGLS+ TT E L+ AF+ FG++ +AKV+TDR +G SKGFGFV Y+T+E++ K  
Sbjct: 55  STNLFVSGLSKRTTSEGLRTAFAQFGEVADAKVVTDRVSGYSKGFGFVRYATLEDSAKGI 114

Query: 97  EGMNAKFLDGWVIFVDPAKPREPRPPPQPQSETS 131
            GM+ KFLDGWVIF + A+PRE     QPQ+  S
Sbjct: 115 AGMDGKFLDGWVIFAEYARPREQSQSYQPQNNMS 148

[Close]

BLAST of CcUC04G066530 vs. TAIR 10
Match: AT1G73530.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 87.4 bits (215), Expect = 1.0e-17
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 0


Query: 32  SSTLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEE 91
           SS+    KL++SGLS  TT++ L++ F  FG L+   ++ D+   R KGF F+ Y T EE
Sbjct: 71  SSSGPKTKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEE 130

Query: 92  AEKAREGMNAKFLDGWVIFVDPAKPREP-------RPPPQPQSETSEF 133
           A KA +GM+ KFLDG VIFV+ AK R         R  P+PQS+   F
Sbjct: 131 AMKAIQGMHGKFLDGRVIFVEEAKTRSDMSRAKPRRDFPKPQSKPRTF 178

[Close]

BLAST of CcUC04G066530 vs. TAIR 10
Match: AT5G06210.1 (RNA binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 86.7 bits (213), Expect = 1.7e-17
Identity = 47/97 (48.45%), Postives = 63/97 (64.95%), Query Frame = 0


Query: 39  KLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAEKAREG 98
           KLFI GLS  TT++ L EAFS  GQ+VEA+++ DR + RSKGFGFVT+++ +EA+KA   
Sbjct: 35  KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94

Query: 99  MNAKFLDGWVIFVDPAKPRE----------PRPPPQP 126
            N + L+G  IFVD AK ++           R PP P
Sbjct: 95  FNGQQLNGRTIFVDYAKAKQSLGGGGGYPIARGPPDP 131

[Close]

BLAST of CcUC04G066530 vs. TAIR 10
Match: AT1G18630.1 (glycine-rich RNA-binding protein 6 )

HSP 1 Score: 84.0 bits (206), Expect = 1.1e-16
Identity = 43/81 (53.09%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 34  TLTSPKLFISGLSRLTTDEKLQEAFSSFGQLVEAKVITDRATGRSKGFGFVTYSTIEEAE 93
           +LT  K+F+ GLS  T  E L+EAF SFG++V+A V+ DR +G S+GFGFVTY +IE A 
Sbjct: 32  SLTPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVAN 91

Query: 94  KAREGMNAKFLDGWVIFVDPA 115
            A + M  K LDG +I V PA
Sbjct: 92  NAMQAMQNKELDGRIIGVHPA 112

The following BLAST results are available for this feature:

BLAST of CcUC04G066530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143719.1	4.5e-68	93.79	organelle RRM domain-containing protein 2, mitochondrial [Momordica charantia]	[more]
XP_031739912.1	7.6e-68	93.84	organelle RRM domain-containing protein 2, mitochondrial [Cucumis sativus] >KAE8...	[more]
XP_022972736.1	4.9e-67	93.20	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita maxima]	[more]
XP_008447620.1	4.9e-67	93.10	PREDICTED: glycine-rich RNA-binding protein 4, mitochondrial [Cucumis melo]	[more]
XP_023517167.1	6.4e-67	95.21	organelle RRM domain-containing protein 2, mitochondrial [Cucurbita pepo subsp. ...	[more]

BLAST of CcUC04G066530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FIU6	2.0e-23	55.32	Organelle RRM domain-containing protein 2, mitochondrial OS=Arabidopsis thaliana...	[more]
Q9FX45	1.4e-16	44.44	Organelle RRM domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana...	[more]
Q9FFZ6	2.4e-16	48.45	Small RNA-binding protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=S...	[more]
Q9FZ84	1.6e-15	53.09	Glycine-rich RNA-binding protein 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]
Q6YWP9	3.5e-15	41.35	Organelle RRM domain-containing protein 1, chloroplastic OS=Oryza sativa subsp. ...	[more]

BLAST of CcUC04G066530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQ59	2.2e-68	93.79	organelle RRM domain-containing protein 2, mitochondrial OS=Momordica charantia ...	[more]
A0A6J1I6S8	2.4e-67	93.20	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita maxima OX=...	[more]
A0A1S3BHV3	2.4e-67	93.10	glycine-rich RNA-binding protein 4, mitochondrial OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1HDN1	4.1e-67	95.21	organelle RRM domain-containing protein 2, mitochondrial OS=Cucurbita moschata O...	[more]
A0A7N2LNA5	9.7e-61	81.94	RRM domain-containing protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]

BLAST of CcUC04G066530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37510.1	8.4e-49	69.66	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G54580.1	1.4e-24	55.32	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G73530.1	1.0e-17	44.44	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G06210.1	1.7e-17	48.45	RNA binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G18630.1	1.1e-16	53.09	glycine-rich RNA-binding protein 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 39..112 e-value: 4.5E-26 score: 102.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 40..106 e-value: 3.3E-20 score: 71.7
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 38..116 score: 18.393282
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 23..139 e-value: 7.1E-28 score: 99.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 114..144
None	No IPR available	PANTHER	PTHR15241:SF282	GLYCINE-RICH RNA-BINDING PROTEIN 6, MITOCHONDRIAL	coord: 1..144
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 1..144
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 37..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G066530.1	CcUC04G066530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding