CcUC04G066330 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G066330
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Cyclin-dependent protein kinase inhibitor SMR3-like
Location	CicolChr04: 23298752 .. 23299183 (+)
RNA-Seq Expression	CcUC04G066330
Synteny	CcUC04G066330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTCAGAATTCCAAGAAATCTCCCTCACTCTGCCTGATCAGATTCCTTTCTCCGCCATTACGCCTCAATCCTTCCGCCTCAACCAGATCGACTTTATTTTCTCTCTAAATACTGCTCCGCCTCAACCAGCCCATGCCCTCACTCCAGCTGAGTCCATCTCCGCCGTTCACGATGACGACGATAACGACGGTTACAAAACGCCGATCTCTTCAGATCATAAGATTCCTGCGCTTCCACAGTGTCCGCCGGCTCCTAGAAGACCGAAACCGATCTCCTTGTCGAGAACCTTGTCGCCGAGAGCTTCCGGCGTTCGCAGAGGTTTCCGAGTGTATATCGCTGACGAAATCGTTGATTCCATCTTCTGCTCCGATTTGCTGCATCAGAAGAGTAAGAAAGGTCGGAAGGACGATGATAATGGCGGTGAATGA

mRNA sequence

ATGGCCTCAGAATTCCAAGAAATCTCCCTCACTCTGCCTGATCAGATTCCTTTCTCCGCCATTACGCCTCAATCCTTCCGCCTCAACCAGATCGACTTTATTTTCTCTCTAAATACTGCTCCGCCTCAACCAGCCCATGCCCTCACTCCAGCTGAGTCCATCTCCGCCGTTCACGATGACGACGATAACGACGGTTACAAAACGCCGATCTCTTCAGATCATAAGATTCCTGCGCTTCCACAGTGTCCGCCGGCTCCTAGAAGACCGAAACCGATCTCCTTGTCGAGAACCTTGTCGCCGAGAGCTTCCGGCGTTCGCAGAGGTTTCCGAGTGTATATCGCTGACGAAATCGTTGATTCCATCTTCTGCTCCGATTTGCTGCATCAGAAGAGTAAGAAAGGTCGGAAGGACGATGATAATGGCGGTGAATGA

Coding sequence (CDS)

ATGGCCTCAGAATTCCAAGAAATCTCCCTCACTCTGCCTGATCAGATTCCTTTCTCCGCCATTACGCCTCAATCCTTCCGCCTCAACCAGATCGACTTTATTTTCTCTCTAAATACTGCTCCGCCTCAACCAGCCCATGCCCTCACTCCAGCTGAGTCCATCTCCGCCGTTCACGATGACGACGATAACGACGGTTACAAAACGCCGATCTCTTCAGATCATAAGATTCCTGCGCTTCCACAGTGTCCGCCGGCTCCTAGAAGACCGAAACCGATCTCCTTGTCGAGAACCTTGTCGCCGAGAGCTTCCGGCGTTCGCAGAGGTTTCCGAGTGTATATCGCTGACGAAATCGTTGATTCCATCTTCTGCTCCGATTTGCTGCATCAGAAGAGTAAGAAAGGTCGGAAGGACGATGATAATGGCGGTGAATGA

Protein sequence

MASEFQEISLTLPDQIPFSAITPQSFRLNQIDFIFSLNTAPPQPAHALTPAESISAVHDDDDNDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFRVYIADEIVDSIFCSDLLHQKSKKGRKDDDNGGE

Homology

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BLAST of CcUC04G066330 vs. NCBI nr
Match: XP_038877666.1 (cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida])

HSP 1 Score: 211.1 bits (536), Expect = 6.4e-51
Identity = 115/146 (78.77%), Postives = 125/146 (85.62%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAITPQ-SFRLNQIDFIFSLNTAPPQPAHALTPAESISAVHD 60
           MASEFQEISLTLPDQI FSAITPQ +FRLNQIDFIFSLN  P +    L PAESISAV  
Sbjct: 1   MASEFQEISLTLPDQISFSAITPQPTFRLNQIDFIFSLNNEPDR----LAPAESISAV-- 60

Query: 61  DDDNDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFRVYIADEIVD 120
           DDD+DG++TP+SSDHKIP +  CPPAP+RPKPISLSRT S RASGVRRGFRVYI+DEIVD
Sbjct: 61  DDDDDGFRTPVSSDHKIPVVRHCPPAPKRPKPISLSRTSSMRASGVRRGFRVYISDEIVD 120

Query: 121 SIFCSDLLHQKSKK--GRKDDDNGGE 144
           SIFCSDLLHQKSKK   + DDDNGGE
Sbjct: 121 SIFCSDLLHQKSKKKARKDDDDNGGE 140

[Close]

BLAST of CcUC04G066330 vs. NCBI nr
Match: XP_022950456.1 (uncharacterized protein LOC111453550 [Cucurbita moschata])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAI-TPQSFRL------NQIDFIFSLNTAPPQPAHALTPAES 60
           MAS FQEIS     +I F+AI TPQSFR+      NQIDFIF+LN  PP  + +++ +  
Sbjct: 65  MASGFQEISPLTHPRISFTAITTPQSFRVNLNDATNQIDFIFALNDDPPLASDSVSVSLD 124

Query: 61  ISAVHD--DDDNDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFRV 120
            SA  D   DD+DG++TP SSDHKIP + QCPPAPRRPKPIS SRTL PR SGVRRGFRV
Sbjct: 125 RSAPPDSISDDDDGFRTPTSSDHKIPVVQQCPPAPRRPKPISCSRTL-PRTSGVRRGFRV 184

Query: 121 YIADEIVDSIFCSDLLHQKSKKGRKDDDNGGE 144
           YI+DEI DSIFC DLLHQK+KK RK + NGGE
Sbjct: 185 YISDEIADSIFCPDLLHQKTKKARK-NGNGGE 214

[Close]

BLAST of CcUC04G066330 vs. NCBI nr
Match: KAG6603657.1 (Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma subsp. sororia] >KAG7033839.1 Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 167.2 bits (422), Expect = 1.1e-37
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAI-TPQSFRL------NQIDFIFSLNTAPPQPAHALTPAES 60
           MAS FQEIS     +I F+AI TPQSFR+      NQIDFIF+LN  PP  + +++ +  
Sbjct: 1   MASGFQEISPLTHPRISFTAITTPQSFRVNLNDATNQIDFIFALNDDPPLASDSVSVSLD 60

Query: 61  ISAVHD--DDDNDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFRV 120
            SA  D   DD+DG++TP SSDHKIP + QCPPAPRRPKPIS SRTL PR SGVRRGFRV
Sbjct: 61  RSAPPDSISDDDDGFRTPTSSDHKIPVVQQCPPAPRRPKPISCSRTL-PRTSGVRRGFRV 120

Query: 121 YIADEIVDSIFCSDLLHQKSKKGRKDDDNGGE 144
           YI+DEI DSIFC DLLHQK+KK RK + NGGE
Sbjct: 121 YISDEIADSIFCPDLLHQKTKKARK-NGNGGE 150

[Close]

BLAST of CcUC04G066330 vs. NCBI nr
Match: KAE8649529.1 (hypothetical protein Csa_017979 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 5.3e-37
Identity = 97/152 (63.82%), Postives = 110/152 (72.37%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAITPQSFRLNQIDFIF----SLNTAP---PQPAHAL--TPA 60
           MASEFQEIS   P  +P         RL+ IDF+F    S++T P   P P+ ++   P 
Sbjct: 1   MASEFQEIS---PGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPP 60

Query: 61  ESISAVHDDDD-NDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFR 120
            SISAV DDD+ NDG+ TPISS HKIP +P CPPAP RPKPISLSRTLSPRASGVRRGF 
Sbjct: 61  VSISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFL 120

Query: 121 VYIADEIVDSIFCSDLLHQKS-KKGRKDDDNG 142
           VYI+D+IVDSIF  DLLHQKS KK RKDDDNG
Sbjct: 121 VYISDQIVDSIFSDDLLHQKSKKKARKDDDNG 149

[Close]

BLAST of CcUC04G066330 vs. NCBI nr
Match: KAA0032644.1 (cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >TYK23525.1 cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.6e-36
Identity = 95/153 (62.09%), Postives = 109/153 (71.24%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAITPQSFRLNQIDFIF-----SLNTAP--PQPAHAL--TPA 60
           M SEFQEIS   P  +P   I+    RL+ IDF+F     S+ T P  P P+ ++   P 
Sbjct: 1   MTSEFQEISPRPPLPLPDHQIS--LIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPP 60

Query: 61  ESISAVHDDDD-NDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFR 120
            SISAV DD++ +DG+ TPISS HKIP +P CPPAP RPKPISLSRTLS RAS VRRGF 
Sbjct: 61  VSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFL 120

Query: 121 VYIADEIVDSIFCSDLLHQKSKKGRKDDDNGGE 144
           VYI+DEIVDSIF  DLLH KSKK RKDDDNGGE
Sbjct: 121 VYISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 151

[Close]

BLAST of CcUC04G066330 vs. ExPASy TrEMBL
Match: A0A0A0KZJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295530 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.8e-38
Identity = 99/154 (64.29%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAITPQSFRLNQIDFIF----SLNTAP---PQPAHAL--TPA 60
           MASEFQEIS   P  +P         RL+ IDF+F    S++T P   P P+ ++   P 
Sbjct: 1   MASEFQEIS---PGPLPLPDHQISLIRLDHIDFLFDSFSSISTPPNSLPSPSRSVQDQPP 60

Query: 61  ESISAVHDDDD-NDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFR 120
            SISAV DDD+ NDG+ TPISS HKIP +P CPPAP RPKPISLSRTLSPRASGVRRGF 
Sbjct: 61  VSISAVDDDDEHNDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSPRASGVRRGFL 120

Query: 121 VYIADEIVDSIFCSDLLHQKS-KKGRKDDDNGGE 144
           VYI+D+IVDSIF  DLLHQKS KK RKDDDNGGE
Sbjct: 121 VYISDQIVDSIFSDDLLHQKSKKKARKDDDNGGE 151

[Close]

BLAST of CcUC04G066330 vs. ExPASy TrEMBL
Match: A0A6J1GEW0 (uncharacterized protein LOC111453550 OS=Cucurbita moschata OX=3662 GN=LOC111453550 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 5.1e-38
Identity = 97/152 (63.82%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAI-TPQSFRL------NQIDFIFSLNTAPPQPAHALTPAES 60
           MAS FQEIS     +I F+AI TPQSFR+      NQIDFIF+LN  PP  + +++ +  
Sbjct: 65  MASGFQEISPLTHPRISFTAITTPQSFRVNLNDATNQIDFIFALNDDPPLASDSVSVSLD 124

Query: 61  ISAVHD--DDDNDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFRV 120
            SA  D   DD+DG++TP SSDHKIP + QCPPAPRRPKPIS SRTL PR SGVRRGFRV
Sbjct: 125 RSAPPDSISDDDDGFRTPTSSDHKIPVVQQCPPAPRRPKPISCSRTL-PRTSGVRRGFRV 184

Query: 121 YIADEIVDSIFCSDLLHQKSKKGRKDDDNGGE 144
           YI+DEI DSIFC DLLHQK+KK RK + NGGE
Sbjct: 185 YISDEIADSIFCPDLLHQKTKKARK-NGNGGE 214

[Close]

BLAST of CcUC04G066330 vs. ExPASy TrEMBL
Match: A0A5A7SN91 (Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00290 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.3e-36
Identity = 95/153 (62.09%), Postives = 109/153 (71.24%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAITPQSFRLNQIDFIF-----SLNTAP--PQPAHAL--TPA 60
           M SEFQEIS   P  +P   I+    RL+ IDF+F     S+ T P  P P+ ++   P 
Sbjct: 1   MTSEFQEISPRPPLPLPDHQIS--LIRLDHIDFLFDSFSSSITTPPSLPSPSDSIQDQPP 60

Query: 61  ESISAVHDDDD-NDGYKTPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFR 120
            SISAV DD++ +DG+ TPISS HKIP +P CPPAP RPKPISLSRTLS RAS VRRGF 
Sbjct: 61  VSISAVDDDEEHSDGFTTPISSHHKIPVIPHCPPAPSRPKPISLSRTLSARASAVRRGFL 120

Query: 121 VYIADEIVDSIFCSDLLHQKSKKGRKDDDNGGE 144
           VYI+DEIVDSIF  DLLH KSKK RKDDDNGGE
Sbjct: 121 VYISDEIVDSIFSDDLLHHKSKKARKDDDNGGE 151

[Close]

BLAST of CcUC04G066330 vs. ExPASy TrEMBL
Match: A0A6J1CQ22 (cyclin-dependent protein kinase inhibitor SMR2-like OS=Momordica charantia OX=3673 GN=LOC111013692 PE=4 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 4.2e-32
Identity = 88/146 (60.27%), Postives = 102/146 (69.86%), Query Frame = 0


Query: 1   MASEFQEISLTLPDQIPFSAITPQSFRL------NQIDFIFSLNTAPPQPAHALTPAESI 60
           MAS FQEISL+   QI   +I+P+SF L      NQIDF+F+LNT   Q        +SI
Sbjct: 1   MASHFQEISLSPSPQISLPSISPESFLLNLEDANNQIDFLFALNTNQQQARR----DDSI 60

Query: 61  SAVHDDDDNDGYKTPISSDHKIPALPQCPPAPRRPKPISL-SRTLSPR-ASGVRRGFRVY 120
           SA     D+DG++TP SSDHKIP + QCPPAPRRPKPIS  SR  SPR ASGVRRGFRVY
Sbjct: 61  SA-----DDDGFRTPTSSDHKIPVIKQCPPAPRRPKPISCRSRRSSPRLASGVRRGFRVY 120

Query: 121 IADEIVDSIFCSDLLHQKSKKGRKDD 139
           I+DEIV+SIF S   HQK KK R+DD
Sbjct: 121 ISDEIVESIFSSSFAHQKMKKARRDD 137

[Close]

BLAST of CcUC04G066330 vs. ExPASy TrEMBL
Match: A0A5D2MEF8 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G270900v1 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.3e-12
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 0


Query: 55  SAVHDDDDNDGYKTPISSDHKIPALPQCPPAPRRPKPISLSR---TLSPRASGVRRGFRV 114
           S  +DD D+DG+KTP S DHKIP + QCPPAPR+PKP+S ++   +  P +SG R   ++
Sbjct: 113 SRANDDGDDDGFKTPTSLDHKIPVMKQCPPAPRKPKPLSSNKRKPSSPPSSSGDRNLLKI 172

Query: 115 YIADEIVDSIFCSDLL---HQKSKKGRKDDDN 141
             A E V+S+F SD+L   H+K KK RK+D N
Sbjct: 173 DFAKE-VESLFPSDVLADTHRKVKKARKEDYN 203

[Close]

BLAST of CcUC04G066330 vs. TAIR 10
Match: AT1G08180.1 (unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.6e-04
Identity = 25/67 (37.31%), Postives = 37/67 (55.22%), Query Frame = 0


Query: 68  TPISSDHKIPALPQCPPAPRRPKPISLSRTLSPRASGVRRGFRVY-IADEIVDSIFCSDL 127
           TP SSDHKIP +  CPP PR+ +P  +S T   R S   R F    +  + V+++F  + 
Sbjct: 41  TPTSSDHKIPEVETCPPPPRK-RPREISLTKKTRLSKDLRFFEATDVGSQEVETLFVHEP 100

Query: 128 LHQKSKK 134
            H + K+
Sbjct: 101 NHVRKKR 106

[Close]

BLAST of CcUC04G066330 vs. TAIR 10
Match: AT5G02420.1 (unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.8e-04
Identity = 26/55 (47.27%), Postives = 34/55 (61.82%), Query Frame = 0


Query: 58  HDD---DDNDGYKTPISSDHKIPALPQ--CPPAPRRPKPISLSRTLSPRASGVRR 108
           H+D   ++ +G KTP SSDHKIP +    CPPAPR+PKP         R+SG +R
Sbjct: 33  HEDPTVNEEEGCKTPTSSDHKIPEVKYTLCPPAPRKPKP--------NRSSGTKR 79

The following BLAST results are available for this feature:

BLAST of CcUC04G066330 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877666.1	6.4e-51	78.77	cyclin-dependent protein kinase inhibitor SMR3-like [Benincasa hispida]	[more]
XP_022950456.1	1.1e-37	63.82	uncharacterized protein LOC111453550 [Cucurbita moschata]	[more]
KAG6603657.1	1.1e-37	63.82	Cyclin-dependent protein kinase inhibitor SMR3, partial [Cucurbita argyrosperma ...	[more]
KAE8649529.1	5.3e-37	63.82	hypothetical protein Csa_017979 [Cucumis sativus]	[more]
KAA0032644.1	2.6e-36	62.09	cyclin-dependent protein kinase inhibitor SMR3-like [Cucumis melo var. makuwa] >...	[more]

BLAST of CcUC04G066330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G066330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KZJ9	1.8e-38	64.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G295530 PE=4 SV=1	[more]
A0A6J1GEW0	5.1e-38	63.82	uncharacterized protein LOC111453550 OS=Cucurbita moschata OX=3662 GN=LOC1114535...	[more]
A0A5A7SN91	1.3e-36	62.09	Cyclin-dependent protein kinase inhibitor SMR3-like OS=Cucumis melo var. makuwa ...	[more]
A0A6J1CQ22	4.2e-32	60.27	cyclin-dependent protein kinase inhibitor SMR2-like OS=Momordica charantia OX=36...	[more]
A0A5D2MEF8	1.3e-12	50.00	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G270900v1 P...	[more]

BLAST of CcUC04G066330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G08180.1	1.6e-04	37.31	unknown protein; Has 53 Blast hits to 53 proteins in 9 species: Archae - 0; Bact...	[more]
AT5G02420.1	2.8e-04	47.27	unknown protein; Has 90 Blast hits to 90 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..99
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..69
None	No IPR available	PANTHER	PTHR33142:SF79	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR3	coord: 58..139
IPR040389	Cyclin-dependent protein kinase inhibitor SMR	PANTHER	PTHR33142	CYCLIN-DEPENDENT PROTEIN KINASE INHIBITOR SMR13	coord: 58..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G066330.1	CcUC04G066330.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032875	regulation of DNA endoreduplication