CcUC04G066230 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G066230
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	UPF0161 protein At3g09310
Location	CicolChr04: 23166441 .. 23167257 (+)
RNA-Seq Expression	CcUC04G066230
Synteny	CcUC04G066230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGACATGGCGGTTCTTCCCACCACAAACTGCCATACACCCCGAAACCAGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCACTGCTGCCGGCTTCAGTATTCTATTTAATCGCCGGAAGCTCCGTTGGCCGTTAATCCTAAGCGAAAAGCGCGCCACATCGAACTCAAGCGCGAACAGTGACCAAGGTACTTGCCTCTTCTTCATTCCTTCGTATTTTTATGTAGTCAACGTATAGACTTTCGATGAATTAGGGCATTTGGATTGGCTTCTCAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCACTATCCATGCTTAAATTCTACAAACGTGAGTAGAATGGTGTTATTTGTTCGGTTTTAGGCTTCTAATTCGAAGAATTCTGTCACAGTTCGATCCAATTGAAGATAATACATACCCTTAAGTTATGATTTGGGTAAATGTGAGCAGGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATCTTGACTGCTTGGCGCCTCTGTCGCTGCAATCCCCTTGGTAATGACATTGTTCTCATTCAAAGGGAACTCGCAAGATGAGAATCATCTTCTTGAACCTTCAGGAAGGAGGTTTATTTTTTTTTTTTTTTTTTTTTGGTTTTTGAGTCTGTACAGTTGATTCTAGGCCATTGCTTCCTTGTAGGTGGATCTGGGTTTGATCCTCCTCGGTGGTTTGATGAAGAAAGCTTGCCAGAACCAGAAGATTGA

mRNA sequence

ATTGACATGGCGGTTCTTCCCACCACAAACTGCCATACACCCCGAAACCAGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCACTGCTGCCGGCTTCAGTATTCTATTTAATCGCCGGAAGCTCCGTTGGCCGTTAATCCTAAGCGAAAAGCGCGCCACATCGAACTCAAGCGCGAACAGTGACCAAGGTACTTGCCTCTTCTTCATTCCTTCGTATTTTTATGTAGTCAACGGCATTTGGATTGGCTTCTCAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCACTATCCATGCTTAAATTCTACAAACGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATCTTGACTGCTTGGCGCCTCTGTCGCTGCAATCCCCTTGGTAATGACATTTTGATTCTAGGCCATTGCTTCCTTGTAGGTGGATCTGGGTTTGATCCTCCTCGGTGGTTTGATGAAGAAAGCTTGCCAGAACCAGAAGATTGA

Coding sequence (CDS)

ATTGACATGGCGGTTCTTCCCACCACAAACTGCCATACACCCCGAAACCAGAACCCAATCTTCTTCGCCGGCCGCTGCCATCAACGGCCCTGCACTGCTGCCGGCTTCAGTATTCTATTTAATCGCCGGAAGCTCCGTTGGCCGTTAATCCTAAGCGAAAAGCGCGCCACATCGAACTCAAGCGCGAACAGTGACCAAGGTACTTGCCTCTTCTTCATTCCTTCGTATTTTTATGTAGTCAACGGCATTTGGATTGGCTTCTCAGATGGCGAAGTGGACAATTTGGGGGTTAAAGCTGCACTATCCATGCTTAAATTCTACAAACGAGAAATCTCGCCGTTATTGCCAAATAGTTGTCGCTATTTACCTACATGTAGTGAGTATTCCATGCAAGCTTACAAGAAATATGGTGTTGCGAAGGGTACTATCTTGACTGCTTGGCGCCTCTGTCGCTGCAATCCCCTTGGTAATGACATTTTGATTCTAGGCCATTGCTTCCTTGTAGGTGGATCTGGGTTTGATCCTCCTCGGTGGTTTGATGAAGAAAGCTTGCCAGAACCAGAAGATTGA

Protein sequence

IDMAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSANSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEESLPEPED

Homology

[Close]

BLAST of CcUC04G066230 vs. NCBI nr
Match: KAA0032659.1 (UPF0161 protein [Cucumis melo var. makuwa] >TYK23539.1 UPF0161 protein [Cucumis melo var. makuwa])

HSP 1 Score: 288.5 bits (737), Expect = 4.2e-74
Identity = 144/187 (77.01%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNC+TP+N NPIFF GRCHQRP  AAGFSI FN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           NSDQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NSDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGT+LTAWRLCRCNP       LGHC LVGGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTVLTAWRLCRCNP-------LGHCCLVGGSGFDPPRWFDEE 158

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 158

[Close]

BLAST of CcUC04G066230 vs. NCBI nr
Match: XP_004142065.1 (UPF0161 protein At3g09310 isoform X1 [Cucumis sativus] >XP_011653638.1 UPF0161 protein At3g09310 isoform X1 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 1.1e-71
Identity = 142/187 (75.94%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNCHT +N NPIFFAGRCHQRPC+AAGFSI FN RKLR  LILSE RATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           NSDQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NSDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL             GGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL-------------GGSGFDPPRWFDEE 152

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 152

[Close]

BLAST of CcUC04G066230 vs. NCBI nr
Match: XP_008448003.1 (PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: UPF0161 protein At3g09310 [Cucumis melo])

HSP 1 Score: 274.2 bits (700), Expect = 8.2e-70
Identity = 139/187 (74.33%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNC+TP+N NPIFF GRCHQRP  AAGFSI FN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           NSDQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NSDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGT+LTAWRLCRCNPL             GGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTVLTAWRLCRCNPL-------------GGSGFDPPRWFDEE 152

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 152

[Close]

BLAST of CcUC04G066230 vs. NCBI nr
Match: XP_038882937.1 (UPF0161 protein At3g09310 isoform X3 [Benincasa hispida])

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-68
Identity = 137/187 (73.26%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVL TTNCH  +NQNP FFAGRCHQRP +AA FSI +NRR LR PLILS+ RATSNSS+
Sbjct: 1   MAVLSTTNCHKLQNQNPSFFAGRCHQRPFSAADFSIQYNRRNLRRPLILSKTRATSNSSS 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           NSDQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NSDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL             GGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL-------------GGSGFDPPRWFDEE 152

Query: 183 SLPEPED 190
           SLPEPED
Sbjct: 181 SLPEPED 152

[Close]

BLAST of CcUC04G066230 vs. NCBI nr
Match: XP_023518310.1 (UPF0161 protein At3g09310 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 261.9 bits (668), Expect = 4.2e-66
Identity = 134/187 (71.66%), Postives = 138/187 (73.80%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNCH  +NQNPIFFAGRCHQ   +AA FSI FN +KLR PLI+SE RATSNSSA
Sbjct: 1   MAVLPTTNCHKLQNQNPIFFAGRCHQSRRSAAAFSIRFNGQKLRRPLIISESRATSNSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           N DQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NRDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNP              G SGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPF-------------GVSGFDPPRWFDEE 152

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 152

[Close]

BLAST of CcUC04G066230 vs. ExPASy Swiss-Prot
Match: Q9SR32 (UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 9.8e-34
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 91  EVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLC 150
           E++++GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+AYKKYGV KGT+LT WRLC
Sbjct: 69  ELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSMEAYKKYGVLKGTVLTTWRLC 128

Query: 151 RCNPLGNDILILGHCFLVGGSGFDPPRWFDEESL 185
           RCNPL             GGSGFDPPRWF E  +
Sbjct: 129 RCNPL-------------GGSGFDPPRWFGESGI 149

[Close]

BLAST of CcUC04G066230 vs. ExPASy Swiss-Prot
Match: Q2S3T2 (Putative membrane protein insertion efficiency factor OS=Salinibacter ruber (strain DSM 13855 / M31) OX=309807 GN=SRU_1017 PE=3 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.7e-15
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 101 LSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDIL 160
           + +++ Y+  +SP L  +CR+ PTCS Y++QA+++YG  KG +LT  RL RC+P      
Sbjct: 17  IGLVRLYQLVLSPHLGRTCRFHPTCSAYAIQAFREYGALKGLVLTVHRLLRCHPW----- 76

Query: 161 ILGHCFLVGGSGFDPPRWFDEE 183
                   GG G+DPPRWFDEE
Sbjct: 77  --------GGHGYDPPRWFDEE 85

[Close]

BLAST of CcUC04G066230 vs. ExPASy Swiss-Prot
Match: C0QTH8 (Putative membrane protein insertion efficiency factor OS=Persephonella marina (strain DSM 14350 / EX-H1) OX=123214 GN=PERMA_0195 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 6.6e-14
Identity = 29/54 (53.70%), Postives = 41/54 (75.93%), Query Frame = 0


Query: 101 LSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNP 155
           + ++K YK+ +SP LPNSCRY PTCS Y++Q+ +KYG  KG++   WR+ RCNP
Sbjct: 6   IKLIKIYKKFVSPALPNSCRYYPTCSSYAIQSIEKYGALKGSLKAVWRILRCNP 59

[Close]

BLAST of CcUC04G066230 vs. ExPASy Swiss-Prot
Match: B0T0Z8 (Putative membrane protein insertion efficiency factor OS=Caulobacter sp. (strain K31) OX=366602 GN=Caul_4526 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.6e-14
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 104 LKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILG 163
           LK YK  +SP +   CRYLPTCSEY+ QA K +G  KG+ L   R+CRCNPL        
Sbjct: 12  LKAYKTTLSPFIGRQCRYLPTCSEYAAQALKDHGPLKGSWLAVGRICRCNPL-------- 71

Query: 164 HCFLVGGSGFDPP 177
                GGSG+DPP
Sbjct: 72  -----GGSGYDPP 71

[Close]

BLAST of CcUC04G066230 vs. ExPASy Swiss-Prot
Match: Q7NJB9 (Putative membrane protein insertion efficiency factor OS=Gloeobacter violaceus (strain ATCC 29082 / PCC 7421) OX=251221 GN=gsl1913 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.3e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 0


Query: 98  KAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL 156
           +AA   ++FY+R +SPL P +CRY+PTCSEY+ QA +++GVA G  L   RLCRC+PL
Sbjct: 6   RAATGAIRFYQRFVSPLTPPTCRYVPTCSEYTRQAIERFGVAAGIWLGTKRLCRCHPL 63

[Close]

BLAST of CcUC04G066230 vs. ExPASy TrEMBL
Match: A0A5A7STY4 (UPF0161 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G00430 PE=3 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.0e-74
Identity = 144/187 (77.01%), Postives = 147/187 (78.61%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNC+TP+N NPIFF GRCHQRP  AAGFSI FN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           NSDQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NSDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGT+LTAWRLCRCNP       LGHC LVGGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTVLTAWRLCRCNP-------LGHCCLVGGSGFDPPRWFDEE 158

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 158

[Close]

BLAST of CcUC04G066230 vs. ExPASy TrEMBL
Match: A0A0A0KXI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 5.5e-72
Identity = 142/187 (75.94%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNCHT +N NPIFFAGRCHQRPC+AAGFSI FN RKLR  LILSE RATSNSSA
Sbjct: 1   MAVLPTTNCHTSQNLNPIFFAGRCHQRPCSAAGFSIRFNCRKLRRSLILSETRATSNSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           NSDQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NSDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL             GGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL-------------GGSGFDPPRWFDEE 152

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 152

[Close]

BLAST of CcUC04G066230 vs. ExPASy TrEMBL
Match: A0A1S3BJN3 (UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1)

HSP 1 Score: 274.2 bits (700), Expect = 3.9e-70
Identity = 139/187 (74.33%), Postives = 142/187 (75.94%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNC+TP+N NPIFF GRCHQRP  AAGFSI FN RKLR PLILSE RATS SSA
Sbjct: 1   MAVLPTTNCNTPQNLNPIFFTGRCHQRPFFAAGFSIRFNCRKLRRPLILSETRATSKSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           NSDQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NSDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGT+LTAWRLCRCNPL             GGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTVLTAWRLCRCNPL-------------GGSGFDPPRWFDEE 152

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 152

[Close]

BLAST of CcUC04G066230 vs. ExPASy TrEMBL
Match: A0A6J1EUS1 (UPF0161 protein At3g09310 OS=Cucurbita moschata OX=3662 GN=LOC111438132 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 1.0e-65
Identity = 133/187 (71.12%), Postives = 138/187 (73.80%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNCH  +NQNPIFFAG C +   +AA FSI FN +KLR PLI+SE RATSNSSA
Sbjct: 1   MAVLPTTNCHKLQNQNPIFFAGGCQKSHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           N DQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL
Sbjct: 61  NGDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL             GGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL-------------GGSGFDPPRWFDEE 152

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 152

[Close]

BLAST of CcUC04G066230 vs. ExPASy TrEMBL
Match: A0A6J1HNH0 (UPF0161 protein At3g09310 OS=Cucurbita maxima OX=3661 GN=LOC111465896 PE=3 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.7e-63
Identity = 131/187 (70.05%), Postives = 136/187 (72.73%), Query Frame = 0


Query: 3   MAVLPTTNCHTPRNQNPIFFAGRCHQRPCTAAGFSILFNRRKLRWPLILSEKRATSNSSA 62
           MAVLPTTNCH  + Q PIFFAG C Q   +AA FSI FN +KLR PLI+SE RATSNSSA
Sbjct: 1   MAVLPTTNCH--KLQKPIFFAGGCQQTHRSAAAFSIRFNGQKLRRPLIISETRATSNSSA 60

Query: 63  NSDQGTCLFFIPSYFYVVNGIWIGFSDGEVDNLGVKAALSMLKFYKREISPLLPNSCRYL 122
           N DQ                      DGEVDNLGVKAALSMLKFYKREISPLLPNSCRY+
Sbjct: 61  NEDQ----------------------DGEVDNLGVKAALSMLKFYKREISPLLPNSCRYV 120

Query: 123 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPLGNDILILGHCFLVGGSGFDPPRWFDEE 182
           PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL             GGSGFDPPRWFDEE
Sbjct: 121 PTCSEYSMQAYKKYGVAKGTILTAWRLCRCNPL-------------GGSGFDPPRWFDEE 150

Query: 183 SLPEPED 190
            LPEPED
Sbjct: 181 RLPEPED 150

[Close]

BLAST of CcUC04G066230 vs. TAIR 10
Match: AT3G09310.1 (unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (InterPro:IPR002696); Has 5781 Blast hits to 5781 proteins in 1903 species: Archae - 0; Bacteria - 3956; Metazoa - 2; Fungi - 0; Plants - 42; Viruses - 3; Other Eukaryotes - 1778 (source: NCBI BLink). )

HSP 1 Score: 144.8 bits (364), Expect = 6.9e-35
Identity = 64/94 (68.09%), Postives = 75/94 (79.79%), Query Frame = 0


Query: 91  EVDNLGVKAALSMLKFYKREISPLLPNSCRYLPTCSEYSMQAYKKYGVAKGTILTAWRLC 150
           E++++GVKAAL+ML+FYKREISP+LP SCRY+PTCSEYSM+AYKKYGV KGT+LT WRLC
Sbjct: 69  ELESVGVKAALAMLRFYKREISPVLPRSCRYVPTCSEYSMEAYKKYGVLKGTVLTTWRLC 128

Query: 151 RCNPLGNDILILGHCFLVGGSGFDPPRWFDEESL 185
           RCNPL             GGSGFDPPRWF E  +
Sbjct: 129 RCNPL-------------GGSGFDPPRWFGESGI 149

The following BLAST results are available for this feature:

BLAST of CcUC04G066230 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032659.1	4.2e-74	77.01	UPF0161 protein [Cucumis melo var. makuwa] >TYK23539.1 UPF0161 protein [Cucumis ...	[more]
XP_004142065.1	1.1e-71	75.94	UPF0161 protein At3g09310 isoform X1 [Cucumis sativus] >XP_011653638.1 UPF0161 p...	[more]
XP_008448003.1	8.2e-70	74.33	PREDICTED: UPF0161 protein At3g09310 [Cucumis melo] >XP_008448011.1 PREDICTED: U...	[more]
XP_038882937.1	1.5e-68	73.26	UPF0161 protein At3g09310 isoform X3 [Benincasa hispida]	[more]
XP_023518310.1	4.2e-66	71.66	UPF0161 protein At3g09310 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC04G066230 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR32	9.8e-34	68.09	UPF0161 protein At3g09310 OS=Arabidopsis thaliana OX=3702 GN=At3g09310 PE=2 SV=2	[more]
Q2S3T2	2.7e-15	43.90	Putative membrane protein insertion efficiency factor OS=Salinibacter ruber (str...	[more]
C0QTH8	6.6e-14	53.70	Putative membrane protein insertion efficiency factor OS=Persephonella marina (s...	[more]
B0T0Z8	8.6e-14	50.68	Putative membrane protein insertion efficiency factor OS=Caulobacter sp. (strain...	[more]
Q7NJB9	3.3e-13	55.17	Putative membrane protein insertion efficiency factor OS=Gloeobacter violaceus (...	[more]

BLAST of CcUC04G066230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7STY4	2.0e-74	77.01	UPF0161 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold500G0043...	[more]
A0A0A0KXI4	5.5e-72	75.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G296120 PE=3 SV=1	[more]
A0A1S3BJN3	3.9e-70	74.33	UPF0161 protein At3g09310 OS=Cucumis melo OX=3656 GN=LOC103490314 PE=3 SV=1	[more]
A0A6J1EUS1	1.0e-65	71.12	UPF0161 protein At3g09310 OS=Cucurbita moschata OX=3662 GN=LOC111438132 PE=3 SV=...	[more]
A0A6J1HNH0	2.7e-63	70.05	UPF0161 protein At3g09310 OS=Cucurbita maxima OX=3661 GN=LOC111465896 PE=3 SV=1	[more]

BLAST of CcUC04G066230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09310.1	6.9e-35	68.09	unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF37 (...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002696	Putative membrane protein insertion efficiency factor	SMART	SM01234	Haemolytic_2	coord: 96..176 e-value: 1.1E-28 score: 111.3
IPR002696	Putative membrane protein insertion efficiency factor	PFAM	PF01809	YidD	coord: 99..156 e-value: 3.6E-23 score: 81.2
IPR002696	Putative membrane protein insertion efficiency factor	TIGRFAM	TIGR00278	TIGR00278	coord: 102..155 e-value: 1.5E-18 score: 64.4
IPR002696	Putative membrane protein insertion efficiency factor	PANTHER	PTHR33383	MEMBRANE PROTEIN INSERTION EFFICIENCY FACTOR-RELATED	coord: 88..185
IPR002696	Putative membrane protein insertion efficiency factor	HAMAP	MF_00386	UPF0161_YidD	coord: 96..164 score: 17.86475

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G066230.1	CcUC04G066230.1	mRNA