CcUC04G065120 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G065120
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	protein trichome birefringence-like 3
Location	CicolChr04: 22046906 .. 22047451 (-)
RNA-Seq Expression	CcUC04G065120
Synteny	CcUC04G065120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCTTGTTGGTACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCTTGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTCAAACCCAAGTCGTGCCCTCGAAAATCCACTCCATCCAAAACAAGTAGGTTTTTTCACGATATTATTGAAATAAATGGTATGTGACTCTTCATTTAAGGTTACATCCTTTTAACCAAACGAAGAGTCAGATGTCAACCAATTTTATATTCCAACTTTCATACATATCTCAATTTTAAAATTGAAGATGGGTGCAGTTGAACTACCAATCCAACATTTTCGTTCTTGCAATTGTCTTCTTCCTTCCGTCTTCACTTTGTGTCTGACCACTTTACCTGCAGGGGAGAAGGGAGTGGAGGAGGAGCGGTCGAGAGACCCGTTGACGGACGACCGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA

mRNA sequence

ATGAGCTTGTTGGTACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCTTGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTCAAACCCAAGGGAGAAGGGAGTGGAGGAGGAGCGGTCGAGAGACCCGTTGACGGACGACCGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA

Coding sequence (CDS)

ATGAGCTTGTTGGTACCGTCTCCCTCTCCGTTGATGGCGAAACCCTCGATCGCCCGACTCAAGCCTCACCTCCCCTTTCTCACCGTCGTCTTTTGTGCCTTCGCCTTCCTTGCTCTCTTCTACACCGAGCGGATCACTTTCTTCTCCTCCACCTCCATTTTCAAACCCAAGGGAGAAGGGAGTGGAGGAGGAGCGGTCGAGAGACCCGTTGACGGACGACCGGTTCGAGTTCGACCCGGAGGAGTGCAGCGTAGTGAAGGGGAAGTGGGTGTTTAA

Protein sequence

MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPKGEGSGGGAVERPVDGRPVRVRPGGVQRSEGEVGV

Homology

[Close]

BLAST of CcUC04G065120 vs. NCBI nr
Match: XP_008464204.1 (PREDICTED: protein trichome birefringence-like 3 [Cucumis melo] >KAA0059079.1 protein trichome birefringence-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSLL  SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFK K
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of CcUC04G065120 vs. NCBI nr
Match: TYK29246.1 (protein trichome birefringence-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 92.8 bits (229), Expect = 1.6e-15
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSLL  SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFK K
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of CcUC04G065120 vs. NCBI nr
Match: XP_004148615.1 (protein trichome birefringence-like 3 [Cucumis sativus] >KAE8649563.1 hypothetical protein Csa_018025 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 1.4e-14
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSLL  SPS LMAK PS+ARLKPHLPFLTVV CAFAFLALFYTERITFFSS SIFK K
Sbjct: 4  MSLLASSPSGLMAKPPSVARLKPHLPFLTVVLCAFAFLALFYTERITFFSSASIFKLK 61

[Close]

BLAST of CcUC04G065120 vs. NCBI nr
Match: XP_038883159.1 (protein trichome birefringence-like 3 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSL  PSPS LMAKPS+ARLKPHLPFL V+ CAFAFL LF+TE ITFFSS SI K K
Sbjct: 1  MSLWAPSPSALMAKPSVARLKPHLPFLIVILCAFAFLVLFHTEGITFFSSISISKLK 57

[Close]

BLAST of CcUC04G065120 vs. NCBI nr
Match: XP_023518545.1 (protein trichome birefringence-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 77.8 bits (190), Expect = 5.4e-11
Identity = 41/55 (74.55%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFK 56
          MSL VP PS  MAKPS+ARLKPHLP LTVV  A  FLALF+T+R+TFFSS+SIFK
Sbjct: 1  MSLSVPLPSAPMAKPSVARLKPHLPLLTVVLFALTFLALFHTQRVTFFSSSSIFK 55

[Close]

BLAST of CcUC04G065120 vs. ExPASy TrEMBL
Match: A0A5A7UZW7 (Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold612G00030 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.8e-16
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSLL  SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFK K
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of CcUC04G065120 vs. ExPASy TrEMBL
Match: A0A5D3E013 (Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1212G00070 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.8e-16
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSLL  SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFK K
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of CcUC04G065120 vs. ExPASy TrEMBL
Match: A0A1S3CLE2 (protein trichome birefringence-like 3 OS=Cucumis melo OX=3656 GN=LOC103502139 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 7.8e-16
Identity = 49/57 (85.96%), Postives = 50/57 (87.72%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSLL  SPS LMAKPS+ARLKPHLPFLT V CAFAFLALFYTERITFFSS SIFK K
Sbjct: 1  MSLLASSPSGLMAKPSVARLKPHLPFLTAVLCAFAFLALFYTERITFFSSASIFKLK 57

[Close]

BLAST of CcUC04G065120 vs. ExPASy TrEMBL
Match: A0A0A0KXK5 (Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G310710 PE=3 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 50/58 (86.21%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 1  MSLLVPSPSPLMAK-PSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSLL  SPS LMAK PS+ARLKPHLPFLTVV CAFAFLALFYTERITFFSS SIFK K
Sbjct: 1  MSLLASSPSGLMAKPPSVARLKPHLPFLTVVLCAFAFLALFYTERITFFSSASIFKLK 58

[Close]

BLAST of CcUC04G065120 vs. ExPASy TrEMBL
Match: A0A6J1IM07 (protein trichome birefringence-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111478238 PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.7e-10
Identity = 44/58 (75.86%), Postives = 46/58 (79.31%), Query Frame = 0


Query: 1  MSLLVPSPSPLM-AKPSIARLKPHLPFLTVVFCAFAFLALFYTERITFFSSTSIFKPK 58
          MSL   SPS LM +K  I RLKP LPFLTVV CAF+FLALFYTERITFFSS SIFK K
Sbjct: 1  MSLSASSPSALMTSKCPITRLKPRLPFLTVVLCAFSFLALFYTERITFFSSISIFKLK 58

The following BLAST results are available for this feature:

BLAST of CcUC04G065120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464204.1	1.6e-15	85.96	PREDICTED: protein trichome birefringence-like 3 [Cucumis melo] >KAA0059079.1 pr...	[more]
TYK29246.1	1.6e-15	85.96	protein trichome birefringence-like 3 [Cucumis melo var. makuwa]	[more]
XP_004148615.1	1.4e-14	86.21	protein trichome birefringence-like 3 [Cucumis sativus] >KAE8649563.1 hypothetic...	[more]
XP_038883159.1	1.3e-12	77.19	protein trichome birefringence-like 3 [Benincasa hispida]	[more]
XP_023518545.1	5.4e-11	74.55	protein trichome birefringence-like 3 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC04G065120 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G065120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZW7	7.8e-16	85.96	Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3E013	7.8e-16	85.96	Protein trichome birefringence-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CLE2	7.8e-16	85.96	protein trichome birefringence-like 3 OS=Cucumis melo OX=3656 GN=LOC103502139 PE...	[more]
A0A0A0KXK5	6.6e-15	86.21	Thioredoxin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G310710...	[more]
A0A6J1IM07	1.7e-10	75.86	protein trichome birefringence-like 3 isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of CcUC04G065120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G065120.1	CcUC04G065120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0045489	pectin biosynthetic process
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:0045492	xylan biosynthetic process
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:1990538	xylan O-acetyltransferase activity