CcUC04G064630 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G064630
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr04: 21250946 .. 21251698 (-)
RNA-Seq Expression	CcUC04G064630
Synteny	CcUC04G064630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGGAATGATCAGTGAGTTGGAGATGTTTTTTAGAAGCGGGCAAGATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATACTAAGACCTTATTCACACAGCGAAGAAAGGCCGAATGGAAGGGGGCCTAACAGAACTTTTCAAAATGTGGGTTCTAAAACCACTTGTGTAGGTCGGGGTTGAGAATTGGGGGGCCAACGAGGCTGGGGCCTGATTTTCCAGCAATGACCGGTCAAGGTCAATCAAAATGGGGATTCACAGATGATTCTCAGCATAGAAGAGATCTTAACAAGTCTGATCACCATCTCTAGAAGGATGGAGCTCGGGCATTGTTATATTCCATCAAGAGAAAGGAGGCAGACTGGTAAGAAGGCCGGGGGAGCGAACCGAAAAGCTCAGCTTTGCGGAACGAACCAATCTTCCGTACCGCACCCTTACTCTTTCTCTATAAAAAAAGCCTGCGGGAAGCGCGAAGAGCTAAGCCACTAATGTCGTGGCGAAGGTTATACCTCAGAAAGTCAGCGAAGCTAAGGTTTCGTATGTGTTTGTTATATCCTTTCGATCGAGCGCGCAGGACTCTCAATTGAGATAAGCTATGACTCTCCAACAAGGACTACCTACAAGGGCAGCAACAACAACCTAGCCCGAAAGACAAAGTCTATGGCCAGAACTCTGAAGGCGGCGGAAGATCGTTCGAAAGCGAGTAGCTAA

mRNA sequence

ATGAACGGAATGATCAGTGAGTTGGAGATGTTTTTTAGAAGCGGGCAAGATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATACTAAGACCTTATTCACACAGCGAAGAAAGGCCGAATGGAAGGGGGCCTAACAGAACTTTTCAAAATGTCAATCAAAATGGGGATTCACAGATGATTCTCAGCATAGAAGAGATCTTAACAAGTCTGATCACCATCTCTAGAAGGATGGAGCTCGGGCATTGTTATATTCCATCAAGAGAAAGGAGGCAGACTGGACTCTCAATTGAGATAAGCTATGACTCTCCAACAAGGACTACCTACAAGGGCAGCAACAACAACCTAGCCCGAAAGACAAAGTCTATGGCCAGAACTCTGAAGGCGGCGGAAGATCGTTCGAAAGCGAGTAGCTAA

Coding sequence (CDS)

ATGAACGGAATGATCAGTGAGTTGGAGATGTTTTTTAGAAGCGGGCAAGATGGTGATGAATTGCGATTGGTCCAAACCTTCGACCAGCGACTTATTGCGACCCGCCCAGAATGGCCATACATACTAAGACCTTATTCACACAGCGAAGAAAGGCCGAATGGAAGGGGGCCTAACAGAACTTTTCAAAATGTCAATCAAAATGGGGATTCACAGATGATTCTCAGCATAGAAGAGATCTTAACAAGTCTGATCACCATCTCTAGAAGGATGGAGCTCGGGCATTGTTATATTCCATCAAGAGAAAGGAGGCAGACTGGACTCTCAATTGAGATAAGCTATGACTCTCCAACAAGGACTACCTACAAGGGCAGCAACAACAACCTAGCCCGAAAGACAAAGTCTATGGCCAGAACTCTGAAGGCGGCGGAAGATCGTTCGAAAGCGAGTAGCTAA

Protein sequence

MNGMISELEMFFRSGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSEERPNGRGPNRTFQNVNQNGDSQMILSIEEILTSLITISRRMELGHCYIPSRERRQTGLSIEISYDSPTRTTYKGSNNNLARKTKSMARTLKAAEDRSKASS

Homology

[Close]

BLAST of CcUC04G064630 vs. NCBI nr
Match: KAF9660770.1 (hypothetical protein SADUNF_SadunfMtG0008600 [Salix dunnii] >KAG6736888.1 hypothetical protein POTOM_060178 [Populus tomentosa])

HSP 1 Score: 72.0 bits (175), Expect = 4.9e-09
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 14  SGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSEERPNGRG 57
           S Q+ D+LRLVQTFD RLIATRPE P ILRPYSHSEERP+GRG
Sbjct: 95  SRQNVDKLRLVQTFDPRLIATRPECPSILRPYSHSEERPSGRG 137

[Close]

BLAST of CcUC04G064630 vs. NCBI nr
Match: PNT57229.1 (hypothetical protein POPTR_001G288100, partial [Populus trichocarpa])

HSP 1 Score: 71.6 bits (174), Expect = 6.4e-09
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 14 SGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSEERPNGRG 57
          S Q+ D+LRLVQTFD RLIATRPE P ILRPYSHSEERP+GRG
Sbjct: 10 SRQNVDKLRLVQTFDLRLIATRPECPSILRPYSHSEERPSGRG 52

[Close]

BLAST of CcUC04G064630 vs. NCBI nr
Match: KAG6621682.1 (hypothetical protein I3842_Q009800 [Carya illinoinensis])

HSP 1 Score: 54.7 bits (130), Expect = 8.1e-04
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 0


Query: 20 ELRLVQTFDQRLIATRPEWPYILRPYSHSEERPNGRG 57
          E +    + +RLIATRPE PYILRPYS+SEERP+GRG
Sbjct: 26 ERKYENKYVKRLIATRPECPYILRPYSYSEERPSGRG 62

[Close]

BLAST of CcUC04G064630 vs. ExPASy TrEMBL
Match: U5GWZ5 (Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_001G288100 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 3.1e-09
Identity = 35/43 (81.40%), Postives = 38/43 (88.37%), Query Frame = 0


Query: 14 SGQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSEERPNGRG 57
          S Q+ D+LRLVQTFD RLIATRPE P ILRPYSHSEERP+GRG
Sbjct: 10 SRQNVDKLRLVQTFDLRLIATRPECPSILRPYSHSEERPSGRG 52

[Close]

BLAST of CcUC04G064630 vs. ExPASy TrEMBL
Match: A0A494G918 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 9.3e-06
Identity = 31/42 (73.81%), Postives = 32/42 (76.19%), Query Frame = 0


Query: 15  GQDGDELRLVQTFDQRLIATRPEWPYILRPYSHSEERPNGRG 57
           GQDGDELRL      RLIA  PE PY LRPYSHSEERP+GRG
Sbjct: 66  GQDGDELRL------RLIAACPECPYRLRPYSHSEERPSGRG 101

The following BLAST results are available for this feature:

BLAST of CcUC04G064630 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF9660770.1	4.9e-09	81.40	hypothetical protein SADUNF_SadunfMtG0008600 [Salix dunnii] >KAG6736888.1 hypoth...	[more]
PNT57229.1	6.4e-09	81.40	hypothetical protein POPTR_001G288100, partial [Populus trichocarpa]	[more]
KAG6621682.1	8.1e-04	67.57	hypothetical protein I3842_Q009800 [Carya illinoinensis]	[more]

BLAST of CcUC04G064630 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G064630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
U5GWZ5	3.1e-09	81.40	Uncharacterized protein (Fragment) OS=Populus trichocarpa OX=3694 GN=POPTR_001G2...	[more]
A0A494G918	9.3e-06	73.81	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]

BLAST of CcUC04G064630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..150
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G064630.1	CcUC04G064630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion