CcUC04G063980 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G063980
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	H/ACA ribonucleoprotein complex subunit
Location	CicolChr04: 20300343 .. 20302470 (-)
RNA-Seq Expression	CcUC04G063980
Synteny	CcUC04G063980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAATTGGGTCACTAACACCCATAAAACCCTAAAAACCCTACGCGGGATTTTGCAGCGAGCCTCCGGTAAAGAAGAGCTCCCTCCTTTTCGCACAGCAACAGCAGAAGAATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGGGGAGGTGGCCGAGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGGTTCGTATCTCCCATTACTTCTTAAATCATTAATTGCTTTGAGCTTTCCATCTTTCGCTTCCTTGTTACCAGTATGAAAAGTTCCATGAAATAGTTTTAGTGACAATGCAATGTTCACTTGGGCTCCTTAAGACTAATTATATTTAGATGTTATTGGTATTTGCGTTTGTATAATCGGAATAAACGATGGATTCTGTTTTTGAGCTTTCCCTTTGTCTCTAACAGTTTGAACTTTGAAGTTTCAGAAGTCTTAAGAATGAATCTAACAAGTTTTGTCAATTTTTCTTTTCTCTAAGATAGTTAATGAATCGTACAAGTTCAACTGTATTCATCACTAAAAGGATTTTTTTTCGTGTTACAGAGGTTTCTACTTTCCTTCATGCATGTGAGGGAGATGCAGTCACGAAGCTCACAAATGAGAAAATCCCTTTCTTTAATGCCCCTATTTATCTTCAGAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAGTCCGTGAGTCCACTGGCCTTGATTTTGTTAGTTGGTTAGTTTTGCATATAGTTTTGGTATATGATAAATCATTGTTTTTGTTAACCCGATTGCAGTATTTCTCTATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCAAAGTACGTAATCCATCTCTTTCCTTTCCTAATCTCGAACGAGGTCTAGAATTTGAGTTGGTTCATCTACATGTTTCTTAGCATCCTTTTTCAAGTTATTGCATATGTCCGTTTGAATTGAGAGGTTTGATAAGGGCTTTTGTGGTGTGCCGTTGCATGTAGTTTTAGTTTACTGTTCACGAGTAAGGTTTGGATAGAATTTCAGGTTGGCATGTTCTGTATTTTTCTTTGTTTTTATTGAGTCTTGAACGGAGGTGGGGTAATGTGTGAAAGATTTGATTGTAGTTAAAACTTTGGCCTCCAAATTGAGTAGAATCACAAGATACTGAAAATAGGGGTGCTATCCTGAATAGACATTTATCAGTTTGTTTTTATTTTTATTTTTATTCTTTATTGAGTGTTTCGGTAGTAGCTAGATTGTCTATATGGTTCCAAATTTTCATAATCTAAACTAACAATGTAGGTTCATATTATGAGGTCTAATGTGACTGATGAAAAAAATTCAAGAACCTATCTTGTGTGCTTCTACTTCTTTTTGCTTTATTCAGCCGATGTTAGTCTTCAGTGACCTGACCCTAATGTGTACTTGAGATAAACAATTTATTTTACTGCGAAACTCTGGCTGCCGTGTTTGGCACTTATCATGTCTTCTTTTTTCTGTTCAGTATCCGAATATTGCTTGTGGATCACGATTCATATGATTTTTTTTTCCTGTCAGAAGGTTTTAGGACTTATTTTTTTAAGTGGAAAGAATCAAAGGACTATTGAGCAATGCTGCACTATGTTTGTGTTAGATTCAGAATAGAAATAACTTTTATGTCTGTTAATTGTTTCAGGGGACAGTTTCCTTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGAATTATGTAATATCATAGTTTTACCAATTTCCCTTTGCAATGTCGTTCTGAGAATCGTTTGCAAGAGTCTTTTGTTTGTACTGTATTTTATTTGGAATTGAACTTCTCGGTACTGAAGCTACTACCTAATTTAATTCTATTGCAAATT

mRNA sequence

ATGGGCAATTGGGTCACTAACACCCATAAAACCCTAAAAACCCTACGCGGGATTTTGCAGCGAGCCTCCGGTAAAGAAGAGCTCCCTCCTTTTCGCACAGCAACAGCAGAAGAATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGGGGAGGTGGCCGAGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGGTTCAGGTTTCTACTTTCCTTCATGCATGTGAGGGAGATGCAGTCACGAAGCTCACAAATGAGAAAATCCCTTTCTTTAATGCCCCTATTTATCTTCAGAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAGTCCTATTTCTCTATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCAAAGGGACAGTTTCCTTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAGATTAGAATTATGTAATATCATAGTTTTACCAATTTCCCTTTGCAATGTCGTTCTGAGAATCGTTTGCAAGAGTCTTTTGTTTGTACTGTATTTTATTTGGAATTGAACTTCTCGGTACTGAAGCTACTACCTAATTTAATTCTATTGCAAATT

Coding sequence (CDS)

ATGGGCAATTGGGTCACTAACACCCATAAAACCCTAAAAACCCTACGCGGGATTTTGCAGCGAGCCTCCGGTAAAGAAGAGCTCCCTCCTTTTCGCACAGCAACAGCAGAAGAATGCGACCTCCAAGGGGCGGCGGTGGCTTCAGGGGAGGCCGTGACGGTGGTTTTGGTGGTAGGGGAGGTGGCCGAGGCGGCGGCGGCAGGGGAGGTGGCCGCTTTGGTGGTCGTGGCGGCGGAGGCTTCCGTGATGAGGGTCCTCCATCTGAAGTCGTTGGTTCAGGTTTCTACTTTCCTTCATGCATGTGAGGGAGATGCAGTCACGAAGCTCACAAATGAGAAAATCCCTTTCTTTAATGCCCCTATTTATCTTCAGAATAAGACTCAGATAGGGAAAGTTGATGAAATTTTCGGCCCCATCAATGAGTCCTATTTCTCTATCAAAATGATGGAAGGAATTGTCGCCACATCGTATGCTTCTGGGGATAAATTTTATATTGATCCAGCTAAACTTTTACCTCTTGCTAGATTCCTCCCACAACCAAAGGGACAGTTTCCTTCTAGAGGCGGAGGTCGTGGAGGGGGCAGAGGTGGCGGCAGAGGTGGCCGTGGGGGTGGTGGCTTTCGTGGAAGGGGTGGCCCAAGAGGTGGCAGAGGTGGTGGCCGTGGTGGCTTTAGGGGTAGAGGAAGATTCTAG

Protein sequence

MGNWVTNTHKTLKTLRGILQRASGKEELPPFRTATAEECDLQGAAVASGEAVTVVLVVGEVAEAAAAGEVAALVVVAAEASVMRVLHLKSLVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMMEGIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGRGGPRGGRGGGRGGFRGRGRF

Homology

[Close]

BLAST of CcUC04G063980 vs. NCBI nr
Match: XP_004147534.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativus] >XP_008441980.1 PREDICTED: putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo] >XP_038881914.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Benincasa hispida] >KAA0060108.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo var. makuwa] >TYK08423.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-60
Identity = 138/146 (94.52%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 49  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 108

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 109 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 168

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 169 GGPRGGRGGPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of CcUC04G063980 vs. NCBI nr
Match: KGN53959.2 (hypothetical protein Csa_021575 [Cucumis sativus])

HSP 1 Score: 243.8 bits (621), Expect = 1.4e-60
Identity = 138/146 (94.52%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 36  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 95

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 96  GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 155

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 156 GGPRGGRGGPPRGGGRGGGFRGRGRF 181

[Close]

BLAST of CcUC04G063980 vs. NCBI nr
Match: KAG6595505.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.6 bits (610), Expect = 2.7e-59
Identity = 136/146 (93.15%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 53  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 112

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQF +RGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 113 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGR 172

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 173 GGPRGGRGGPARGGGRGGGFRGRGRF 198

[Close]

BLAST of CcUC04G063980 vs. NCBI nr
Match: XP_022925015.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita moschata] >XP_022966461.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita maxima] >XP_023518192.1 putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.6 bits (610), Expect = 2.7e-59
Identity = 136/146 (93.15%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 53  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 112

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQF +RGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 113 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGR 172

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 173 GGPRGGRGGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of CcUC04G063980 vs. NCBI nr
Match: XP_023522638.1 (putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 238.0 bits (606), Expect = 7.9e-59
Identity = 135/146 (92.47%), Postives = 138/146 (94.52%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           + +VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 38  VTEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 97

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQF +RGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 98  GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGR 157

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 158 GGPRGGRGGPPRGGGRGGGFRGRGRF 183

[Close]

BLAST of CcUC04G063980 vs. ExPASy Swiss-Prot
Match: Q8VZT0 (Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=At3g03920 PE=2 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.4e-45
Identity = 112/145 (77.24%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMME
Sbjct: 58  VVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMME 117

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRG-GRGGGGFRG 210
           GIVATSY+ GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG  RG GRGG   RG
Sbjct: 118 GIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRG 177

Query: 211 RGGPRGG----RGGGRGGFRGRGRF 231
           RG PRGG    RGG RG FRGRGRF
Sbjct: 178 RGAPRGGRFPPRGGSRGSFRGRGRF 202

[Close]

BLAST of CcUC04G063980 vs. ExPASy Swiss-Prot
Match: Q9FK53 (H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g18180 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 7.7e-41
Identity = 107/145 (73.79%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+V+TFLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM E
Sbjct: 45  VVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMRE 104

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSY+ GDKF+I P KLLPL+RFLPQPKGQ   RG GR   RG G   RG G FRGR
Sbjct: 105 GIVATSYSQGDKFFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRG-PPRGRGNFRGR 164

Query: 211 GGPRGG------RGGGRGGFRGRGR 230
           G PRG       RGG RGGFRGRGR
Sbjct: 165 GAPRGASRGFQPRGGPRGGFRGRGR 188

[Close]

BLAST of CcUC04G063980 vs. ExPASy Swiss-Prot
Match: Q6FSB0 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 92/163 (56.44%), Postives = 110/163 (67.48%), Query Frame = 0


Query: 90  SLVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMM 149
           +++++  F+H CEGD V +  N K+P+FNAPIYL+NKTQ+GKVDEI GP+NE YF+IK  
Sbjct: 37  TVLEMGEFMHPCEGDVVCRSINTKVPYFNAPIYLENKTQVGKVDEILGPLNEVYFTIKCG 96

Query: 150 EGIVATSYASGDKFYIDPAKLLPLARFLPQPK--------------GQFPSRGGGRG--G 209
           EG+ ATS+  GDKFYI P KLLP+ RF+P+PK              G    RGG RG  G
Sbjct: 97  EGVQATSFKEGDKFYIAPDKLLPIERFIPKPKVAGPPKPKNKKKRSGAPAGRGGARGGFG 156

Query: 210 GRGGGRGGRGG-----GGFRGRGGPR---GGRGGGRGGFRGRG 229
           GRGG RGG GG     GGF GRGG R   GGRGG RGGF GRG
Sbjct: 157 GRGGSRGGFGGRGGSRGGFGGRGGSRGGFGGRGGSRGGFGGRG 199

[Close]

BLAST of CcUC04G063980 vs. ExPASy Swiss-Prot
Match: Q6BVF9 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-32
Identity = 91/151 (60.26%), Postives = 109/151 (72.19%), Query Frame = 0


Query: 90  SLVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMM 149
           +++++  F+ +CEGD V +  N KIP+FNAPIYL+NKTQ+GKVDEI GP+NE +F+IK  
Sbjct: 28  TVLEMGAFMQSCEGDIVCRSINVKIPYFNAPIYLENKTQVGKVDEILGPVNEVFFTIKPS 87

Query: 150 EGIVATSYASGDKFYIDPAKLLPLARFLPQPK--GQFPSR----GGGRG--GGRGGGRGG 209
           EG+ A S+  GDKFYI P KLLPL RFLP+PK  G  P +    G GRG  GGRGG RGG
Sbjct: 88  EGVQADSFKDGDKFYIGPDKLLPLERFLPKPKEFGTKPKKKSAGGAGRGGFGGRGGARGG 147

Query: 210 RGG----GGFRGRGGPRGGRGGGRGGFRGRG 229
           RGG    GG RG  G RGGRGG RGGF GRG
Sbjct: 148 RGGFGGRGGSRGGFGDRGGRGGSRGGFGGRG 178

[Close]

BLAST of CcUC04G063980 vs. ExPASy Swiss-Prot
Match: Q757V8 (H/ACA ribonucleoprotein complex subunit GAR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=GAR1 PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.1e-31
Identity = 92/162 (56.79%), Postives = 110/162 (67.90%), Query Frame = 0


Query: 90  SLVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMM 149
           S+V++  F+H CEGD V +  N KIP+FNA IYL+NKT++GKVDEI GP+NE +F+IK  
Sbjct: 37  SVVEMGAFMHDCEGDIVCRSINTKIPYFNAMIYLENKTEVGKVDEILGPLNEVFFTIKCA 96

Query: 150 EGIVATSYASGDKFYIDPAKLLPLARFLPQPK-------------GQFPSRG--GGRGGG 209
           EG+ A+S+  GDKFYI P KLLP+ RF+P+PK             G  P RG  GGRGG 
Sbjct: 97  EGVKASSFKDGDKFYISPEKLLPIERFIPKPKVAGPPKPKRKRAAGGAPGRGGFGGRGGS 156

Query: 210 RGGGRGGRGG--GGFRGRGGPR------GGRGGGRGGFRGRG 229
           R GG GGRGG  GGF GRGG R      GGRGG RGGF GRG
Sbjct: 157 R-GGFGGRGGARGGFGGRGGARGGFGGFGGRGGSRGGFGGRG 197

[Close]

BLAST of CcUC04G063980 vs. ExPASy TrEMBL
Match: A0A5D3C949 (H/ACA ribonucleoprotein complex subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold654G00380 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 7.0e-61
Identity = 138/146 (94.52%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 49  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 108

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 109 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 168

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 169 GGPRGGRGGPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of CcUC04G063980 vs. ExPASy TrEMBL
Match: A0A0A0KWF0 (H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G192120 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 7.0e-61
Identity = 138/146 (94.52%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 49  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 108

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 109 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 168

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 169 GGPRGGRGGPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of CcUC04G063980 vs. ExPASy TrEMBL
Match: A0A1S3B5D8 (H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 PE=3 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 7.0e-61
Identity = 138/146 (94.52%), Postives = 140/146 (95.89%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 49  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 108

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 109 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 168

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 169 GGPRGGRGGPPRGGGRGGGFRGRGRF 194

[Close]

BLAST of CcUC04G063980 vs. ExPASy TrEMBL
Match: A0A6J1HPE3 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466108 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.3e-59
Identity = 136/146 (93.15%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 53  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 112

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQF +RGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 113 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGR 172

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 173 GGPRGGRGGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of CcUC04G063980 vs. ExPASy TrEMBL
Match: A0A6J1EGP8 (H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC111432388 PE=3 SV=1)

HSP 1 Score: 239.6 bits (610), Expect = 1.3e-59
Identity = 136/146 (93.15%), Postives = 139/146 (95.21%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+VSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME
Sbjct: 53  VVEVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 112

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQF +RGGGRGGGRGGGRGGRGGGGFRGR
Sbjct: 113 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFAARGGGRGGGRGGGRGGRGGGGFRGR 172

Query: 211 GGPRGG-----RGGGR-GGFRGRGRF 231
           GGPRGG     RGGGR GGFRGRGRF
Sbjct: 173 GGPRGGRGGPPRGGGRGGGFRGRGRF 198

[Close]

BLAST of CcUC04G063980 vs. TAIR 10
Match: AT3G03920.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 184.5 bits (467), Expect = 9.6e-47
Identity = 112/145 (77.24%), Postives = 120/145 (82.76%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+V+TF+HACEGDAVTKL+ EKIP FNAPIYL+NKTQIGKVDEIFGPINES FSIKMME
Sbjct: 58  VVEVATFVHACEGDAVTKLSQEKIPHFNAPIYLENKTQIGKVDEIFGPINESLFSIKMME 117

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRG-GRGGGGFRG 210
           GIVATSY+ GDKF+IDP KLLPLARFLPQPKGQ     GG G GRG  RG GRGG   RG
Sbjct: 118 GIVATSYSPGDKFFIDPYKLLPLARFLPQPKGQSTGGRGGAGRGRGDSRGRGRGGSFSRG 177

Query: 211 RGGPRGG----RGGGRGGFRGRGRF 231
           RG PRGG    RGG RG FRGRGRF
Sbjct: 178 RGAPRGGRFPPRGGSRGSFRGRGRF 202

[Close]

BLAST of CcUC04G063980 vs. TAIR 10
Match: AT5G18180.1 (H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein )

HSP 1 Score: 168.7 bits (426), Expect = 5.5e-42
Identity = 107/145 (73.79%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 91  LVQVSTFLHACEGDAVTKLTNEKIPFFNAPIYLQNKTQIGKVDEIFGPINESYFSIKMME 150
           +V+V+TFLHACEGDAV KL+N KIP FNAPIYLQNKTQIG+VDEIFGPINES FSIKM E
Sbjct: 45  VVEVATFLHACEGDAVFKLSNVKIPHFNAPIYLQNKTQIGRVDEIFGPINESLFSIKMRE 104

Query: 151 GIVATSYASGDKFYIDPAKLLPLARFLPQPKGQFPSRGGGRGGGRGGGRGGRGGGGFRGR 210
           GIVATSY+ GDKF+I P KLLPL+RFLPQPKGQ   RG GR   RG G   RG G FRGR
Sbjct: 105 GIVATSYSQGDKFFISPEKLLPLSRFLPQPKGQSGGRGEGRVPPRGRG-PPRGRGNFRGR 164

Query: 211 GGPRGG------RGGGRGGFRGRGR 230
           G PRG       RGG RGGFRGRGR
Sbjct: 165 GAPRGASRGFQPRGGPRGGFRGRGR 188

The following BLAST results are available for this feature:

BLAST of CcUC04G063980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147534.1	1.4e-60	94.52	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucumis sativ...	[more]
KGN53959.2	1.4e-60	94.52	hypothetical protein Csa_021575 [Cucumis sativus]	[more]
KAG6595505.1	2.7e-59	93.15	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]
XP_022925015.1	2.7e-59	93.15	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Cucurbita mos...	[more]
XP_023522638.1	7.9e-59	92.47	putative H/ACA ribonucleoprotein complex subunit 1-like protein 1, partial [Cucu...	[more]

BLAST of CcUC04G063980 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZT0	1.4e-45	77.24	Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 OS=Arabidopsis...	[more]
Q9FK53	7.7e-41	73.79	H/ACA ribonucleoprotein complex subunit 1-like protein 2 OS=Arabidopsis thaliana...	[more]
Q6FSB0	1.3e-32	56.44	H/ACA ribonucleoprotein complex subunit GAR1 OS=Candida glabrata (strain ATCC 20...	[more]
Q6BVF9	1.3e-32	60.26	H/ACA ribonucleoprotein complex subunit GAR1 OS=Debaryomyces hansenii (strain AT...	[more]
Q757V8	1.1e-31	56.79	H/ACA ribonucleoprotein complex subunit GAR1 OS=Ashbya gossypii (strain ATCC 108...	[more]

BLAST of CcUC04G063980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C949	7.0e-61	94.52	H/ACA ribonucleoprotein complex subunit OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0KWF0	7.0e-61	94.52	H/ACA ribonucleoprotein complex subunit OS=Cucumis sativus OX=3659 GN=Csa_4G1921...	[more]
A0A1S3B5D8	7.0e-61	94.52	H/ACA ribonucleoprotein complex subunit OS=Cucumis melo OX=3656 GN=LOC103485980 ...	[more]
A0A6J1HPE3	1.3e-59	93.15	H/ACA ribonucleoprotein complex subunit OS=Cucurbita maxima OX=3661 GN=LOC111466...	[more]
A0A6J1EGP8	1.3e-59	93.15	H/ACA ribonucleoprotein complex subunit OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]

BLAST of CcUC04G063980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03920.1	9.6e-47	77.24	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]
AT5G18180.1	5.5e-42	73.79	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain	GENE3D	2.40.10.230	Probable tRNA pseudouridine synthase domain	coord: 88..178 e-value: 5.3E-40 score: 137.2
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1	PFAM	PF04410	Gar1	coord: 90..181 e-value: 6.1E-32 score: 110.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..230
None	No IPR available	PANTHER	PTHR23237:SF12	H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT	coord: 91..229
None	No IPR available	PANTHER	PTHR23237	NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1	coord: 91..229
IPR009000	Translation protein, beta-barrel domain superfamily	SUPERFAMILY	50447	Translation proteins	coord: 93..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G063980.1	CcUC04G063980.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0000454	snoRNA guided rRNA pseudouridine synthesis
biological_process	GO:0030433	ubiquitin-dependent ERAD pathway
biological_process	GO:0001522	pseudouridine synthesis
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0031429	box H/ACA snoRNP complex
cellular_component	GO:0000839	Hrd1p ubiquitin ligase ERAD-L complex
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
molecular_function	GO:0034513	box H/ACA snoRNA binding
molecular_function	GO:0051787	misfolded protein binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:1990381	ubiquitin-specific protease binding