CcUC04G063610 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G063610
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Hsp70 nucleotide exchange factor FES1
Location	CicolChr04: 19731924 .. 19735010 (-)
RNA-Seq Expression	CcUC04G063610
Synteny	CcUC04G063610

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTAGCCGGCGACGGCGGCGGAAACGGCCGGGAACGGGAACGGGAACGTCTTTTAGTACCACCTGACGGCGAGTTCTTGAAGACGCTCGACAGAGGACTCGGAGTGAAGAACGGCAAATTAGAAGGGGAATTTGTGGTCTGTGGATCGGTAATGTCCTCGCATTTCGCCTTAGGGTTTGCTTTCAACTTTGCATGGCAAATTCCCATGGATTTGGAACTCGACGTCCGCAATTGAAGAGGGGAAAAGAGGAGAAATATGGTGACAATGAATCAATCACTGAGAAGAAGGAGCTTCATTCATGGGAGAGAAAGAGAAACCTCTAAGGTACTGTATGAAGTTTGTTTAAACTTCTCTGATAATGGCAATGGCAGAGGAGAAATCAATGCTAAGTAGAGAAATAGAGAAATGTAGCATAATTAGAATAGAGATGAGAAAAGAAGAAGAAGAATAACATTGTTCTTTTTCTTTATGGTTTCTTCTGCATTGTCTGTGATAGGTGAACCCAACAAGAATCACTACAAGACAACCAAAATGGGAGCAGAAATCAAGGCAAAGAACGAGCAAAGAGGAAAACCAGAACAAGTTTCTGAGGCTCAGGTGAGACACATAACATAAAAACAAAATGCTACATTACATTGCTACTTACAAGTTTAATACTCAATACTTTTTGATGCTTCTCTGTCTCTTACCCTTATAAATTATTATACTTTGGACCTATCAAACCTTAAGCTATGGTAGGTTTGTCCCAATAGAGCTTGTGTGAACTGACTTTTGAAGTACAATCTAAAAAGTCATTTCAAATACCTCTTTAGTTTCAATAATGATATTATTTTGACTATATTTGCATTTATAGACTATTATGCTTTGAAAGATTTGTCTATTTGAAAGACTGAAGTTTGTTTGAAAAATGTCATTTCAAATACCTCTTTAGTTTCAATAATGATATTGTTCTAACTATATTTACATTTATAAACTATTACACTTTGAATCGGTCAAAACCTAAGCTACATATTTGTCTCCCTAGAAGACTTAGAGCGGATTTGAAATGACTTTTGATATGATTTTTAAAAAGTCATTTCAAATACGTCTTTAATTTCATATTGTTAGGACTATATTTGCATTCTAACTTCTAACACAATTATATTATGGAAGTTCAAAGATTGGATGAATATTTAGTGATTATAATCTAATCATTTATATATATATATCATTCTTCAATAAAATAAAAAGGTGGGAAAATGAGGAAAATGGTTACCAAAGTTAGGAGGAAAATGGTTACCAAAGTTAGGCAACACATTATTTCCACTTTCTCTTCTTTTTGTAAGCTTTATATGTGATTGCAAGTAAACTATATTTTATTTTAGTAAGGTGAGAGGAGAATTTGTGTTTGTGAATGGAAGAAATAAAGAAAGAATAATGGAAGTGGGGTTGGGGATTGGTTTGGATCCTTCTATTCCAGGCTGTCTTTGTTGGGCTATCACAAAAACCAAGAAAAGATGTAATATAATTCAATTTCTTGCTTCAGCTTTGTAACAAGATATATATAAGATTTAGTTTATTCAATTACCTTTGTCTGTATATGAGCTTTTCAAACCTGGCTTCTTTTCTTTTTTTCTTTTGTGATTTGAAAAGCTCTTGATCATATGTATTTTCATGGTTTTGAATATGAATAAGGATAATGGAATTGTCTAAATTGTCAATTTCATTACTTTGATAATGATTTCATTTATAGGTCTCTGTTTTTTAAATTTATGATTCATTTCTCTCAGTTTCTTTACGGTTTTCACATTTTTAAAATAAATGTTTGATATATATATGTACATTTTATCAACTTCCAAAGACTAAAATAAAAAAATAAAAAATTGAAAGCTGTTGTTTTTTTAGTTTCCAAAATTTAACATGATTTTAAAAACATTGTTGGAAAATAGATGTAGTGTTTAGTCTTAATATTCTAAAACTAAAATGTCAAAAATCCAAGTTCTGGTTAACAAACTTTTGGTTTTTAAAAATTAAGCCGGTAAATATCACTCTCAACCATTGGTTTATTTGTTTTGTTGCTTGCTTTTTAGAAGTATTTTAAAAATCCAATCCCATTTTTGAAAATAAAAGAAAGTAGTTTTTGTTTTTGTTTTCGAAATTTGGCTAAAAATTCAAATTTTTACTTAAGAATGATGAATGGTGAGGAAACAGAAAATCGAATAGTCATCAAATAGATCCAAATGATCATCAAACAAAACCTAAAGATTGAAATTGATCTGCAGACAATACCAAGGCTCACGGGTACCAACTCTAGGAATGGTGGCACGCCAATTCTTTGAGATAGTGTGTAAATTTTGCTTCAAATCTTTAATAATTGTGCTAATTATTGAATCCTAGTTTCTCTCTTTTCCAAGAAAGTGCGGTGATTTGAAGCATCATTACCAATTATTTGAGCTAGAGTAACTTAGAAATTCGTTAGGATAGAATTAGTAAAGTCAAAAGTTTAAATCTTATATTGGTTCTTTGAGTTTTGTTTTATTTTAGTCCCTAAATTTTTAAAATGTCTATTTTGGTCTCTGCATTATTATGTTGATAATGGGTTGACAACATGATGACATGACTTAAAAATTTTAAATAATTGAACGCTGAAGTGGTTTAAGTGAGCTGTCAAATAAGCAAGACACTATTATCTGGAAATTTAAAATCTTTAATTATTGTATTAACGTCAAATTCTATGTTTTGATTGATGTCAAAGAAACTCAATGATGAACAGACATCATTAACACCAAGCTCGATTTCAAACTTCTTTGTGTTCACTTTGAATGGACTATTTTCTACAACGATTAAACACGTTGAGCCTTTGCTTCGTAGCATCGATTGTGGACTAGGATGTAGAACTTGTTTTTGCCACTAACAAACTTGACAATGGGTCCTTCACAGACCTTTCTCCTTATGGGTTAATGGTGGATTTGATAACTCAGGAAAATTAACAAGAAATTTTTTTTTTCATCAATTACATCCTGTCTCAGGATGTTCAGTGAAGATGAAACAAAATATGAAGTGGGAATAAAAGAAAAATACCTCAAAGATCCTAGAAATTGA

mRNA sequence

ATGTGTTTAGCCGGCGACGGCGGCGGAAACGGCCGGGAACGGGAACGGGAACGTCTTTTAGTACCACCTGACGGCGAGTTCTTGAAGACGCTCGACAGAGGACTCGGAGTGAAGAACGGCAAATTAGAAGGGGAATTTGTGGTCTGTGGATCGGTGAACCCAACAAGAATCACTACAAGACAACCAAAATGGGAGCAGAAATCAAGGCAAAGAACGAGCAAAGAGGAAAACCAGAACAAGTTTCTGAGGCTCAGGATGTTCAGTGAAGATGAAACAAAATATGAAGTGGGAATAAAAGAAAAATACCTCAAAGATCCTAGAAATTGA

Coding sequence (CDS)

ATGTGTTTAGCCGGCGACGGCGGCGGAAACGGCCGGGAACGGGAACGGGAACGTCTTTTAGTACCACCTGACGGCGAGTTCTTGAAGACGCTCGACAGAGGACTCGGAGTGAAGAACGGCAAATTAGAAGGGGAATTTGTGGTCTGTGGATCGGTGAACCCAACAAGAATCACTACAAGACAACCAAAATGGGAGCAGAAATCAAGGCAAAGAACGAGCAAAGAGGAAAACCAGAACAAGTTTCTGAGGCTCAGGATGTTCAGTGAAGATGAAACAAAATATGAAGTGGGAATAAAAGAAAAATACCTCAAAGATCCTAGAAATTGA

Protein sequence

MCLAGDGGGNGRERERERLLVPPDGEFLKTLDRGLGVKNGKLEGEFVVCGSVNPTRITTRQPKWEQKSRQRTSKEENQNKFLRLRMFSEDETKYEVGIKEKYLKDPRN

Homology

[Close]

BLAST of CcUC04G063610 vs. NCBI nr
Match: KAA0026024.1 (hsp70 nucleotide exchange factor FES1 [Cucumis melo var. makuwa] >TYK22828.1 hsp70 nucleotide exchange factor FES1 [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 4.0e-05
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 6  DGGGNGRERERERLLVPPDGEFLKTLDRGLGVKN 40
          DGGGNG+E+ERER  V  DG+FLKTLDRGLGVKN
Sbjct: 8  DGGGNGQEQERERRFVLTDGKFLKTLDRGLGVKN 41

[Close]

BLAST of CcUC04G063610 vs. ExPASy TrEMBL
Match: A0A5A7SK04 (Hsp70 nucleotide exchange factor FES1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00050 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.9e-05
Identity = 27/34 (79.41%), Postives = 30/34 (88.24%), Query Frame = 0


Query: 6  DGGGNGRERERERLLVPPDGEFLKTLDRGLGVKN 40
          DGGGNG+E+ERER  V  DG+FLKTLDRGLGVKN
Sbjct: 8  DGGGNGQEQERERRFVLTDGKFLKTLDRGLGVKN 41

The following BLAST results are available for this feature:

BLAST of CcUC04G063610 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0026024.1	4.0e-05	79.41	hsp70 nucleotide exchange factor FES1 [Cucumis melo var. makuwa] >TYK22828.1 hsp...	[more]

BLAST of CcUC04G063610 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC04G063610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SK04	1.9e-05	79.41	Hsp70 nucleotide exchange factor FES1 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]

BLAST of CcUC04G063610 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..79
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..79

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G063610.1	CcUC04G063610.1	mRNA