CcUC04G063460 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G063460
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 19078572 .. 19079898 (+)
RNA-Seq ExpressionCcUC04G063460
SyntenyCcUC04G063460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTAAACACCTCTTTGAGAGATTGAAGCTAGGCTTCAGACCCAATGAACTCTTGACGCTAGTCGACAAGCCGTCAAAACGTTGTATATTATGGTGCCAAAAGTTTGTTCAAACTCTTGACAGGGTGTTGATGGACGTTGGTAGCTCTCCCAATGGAAATTTCCCGACGACACCAACGTCATCTGGAGACGATCTCCCAGACATGTTTTTTTTACTAATTTCCGATGATTTGAGGCGTCGGAAGAGTATCTTTATCAAGCTAAATCTGAATGCAAAAAAAAAAAAAAAAAAAAAAAAAAGATTTTAAAACTTAAATTCGTAAAGTATGGAATATTAGTAAAGTATGGAATATCATTAACAACTCAAAACTATTTAAGATAAGCTTATAATTAACACTTACCTTCAAACGAAATAAATCCAACTCATTAGCTTAGTGATAATTGGCATACACTACTCCATAACTGATCAGTTGTACTTAAAAAAAAAAAATTCTTTTAACTCATTAGTGGACTCTCAACCAAACAAAACTACGCATTAAAATTAAGAATATGACCACAACATATAAAAATGATATCCCTTTGTGCATCATTATTTACAAATAATAGGAATATAACATTAAATTTAAATGGTGGGAATTCCACTAAATCCGCATTACTTAGTGCATTAAATTCCACCATTACTAGTAAGTAAATTAAATCCCTATAAATACCAAAGAAATTAAATTTCAATTACACATCAGAGATTTCAACTTCAAAGTTTTGTTTGTTGAAATGAAGTTGCAGTTTCTTCCCTTCTTTTTGGTTGCCATCCTTTCAATCTTTCTGCTTTCTCGAGAAGTTGATGGAAGAAAGTCTTTACTTCAAAAAGAAAATAGGGAAGACTACTCTAAGCTTGTCAAGCAAAGTACTCTTTTAGATGGAGATTTTCATGGTGAAATGGTGGCTAATCATCAAATGAAAAAAATTCCAACTGATTTAGAAGATCCTGTGGATCAAGAGGGCGAAAGTTCCGAAGGTGAAGACGGATTAGAGGAAGGCATTCCTGCTGGCGACGGAGGAGAATATGGAGGAGGAACTCCTGGAGAAGAATCTGGAGAAGTTCCTGAAGGTGATGGAGGAGAACCTGGAGAATATGTCCCTGGAGATGAAGACGGAGATTCTGGCGAAGGGGTCGAAGGAGATGACAGAGGCGAATCTGGAGAAGAGGATACTGGTAACAATGGAGAAGATTCTGGAGAAATGGAACCTGGAGACAACCAAGAAAAATCTAGAGGCAAGGATGGAGATGGAGATATTGTAAGTGATGATGAAGATAAAAGGGGGTGA

mRNA sequence

ATGGTTAAACACCTCTTTGAGAGATTGAAGCTAGGCTTCAGACCCAATGAACTCTTGACGCTAGTCGACAAGCCGTCAAAACGTTGTATATTATGGTGCCAAAAGTTTGTTCAAACTCTTGACAGGGTGTTGATGGACGTTGAAGTTGATGGAAGAAAGTCTTTACTTCAAAAAGAAAATAGGGAAGACTACTCTAAGCTTGTCAAGCAAAGTACTCTTTTAGATGGAGATTTTCATGGTGAAATGGTGGCTAATCATCAAATGAAAAAAATTCCAACTGATTTAGAAGATCCTGTGGATCAAGAGGGCGAAAGTTCCGAAGGTGAAGACGGATTAGAGGAAGGCATTCCTGCTGGCGACGGAGGAGAATATGGAGGAGGAACTCCTGGAGAAGAATCTGGAGAAGTTCCTGAAGGTGATGGAGGAGAACCTGGAGAATATGTCCCTGGAGATGAAGACGGAGATTCTGGCGAAGGGGTCGAAGGAGATGACAGAGGCGAATCTGGAGAAGAGGATACTGGTAACAATGGAGAAGATTCTGGAGAAATGGAACCTGGAGACAACCAAGAAAAATCTAGAGGCAAGGATGGAGATGGAGATATTGTAAGTGATGATGAAGATAAAAGGGGGTGA

Coding sequence (CDS)

ATGGTTAAACACCTCTTTGAGAGATTGAAGCTAGGCTTCAGACCCAATGAACTCTTGACGCTAGTCGACAAGCCGTCAAAACGTTGTATATTATGGTGCCAAAAGTTTGTTCAAACTCTTGACAGGGTGTTGATGGACGTTGAAGTTGATGGAAGAAAGTCTTTACTTCAAAAAGAAAATAGGGAAGACTACTCTAAGCTTGTCAAGCAAAGTACTCTTTTAGATGGAGATTTTCATGGTGAAATGGTGGCTAATCATCAAATGAAAAAAATTCCAACTGATTTAGAAGATCCTGTGGATCAAGAGGGCGAAAGTTCCGAAGGTGAAGACGGATTAGAGGAAGGCATTCCTGCTGGCGACGGAGGAGAATATGGAGGAGGAACTCCTGGAGAAGAATCTGGAGAAGTTCCTGAAGGTGATGGAGGAGAACCTGGAGAATATGTCCCTGGAGATGAAGACGGAGATTCTGGCGAAGGGGTCGAAGGAGATGACAGAGGCGAATCTGGAGAAGAGGATACTGGTAACAATGGAGAAGATTCTGGAGAAATGGAACCTGGAGACAACCAAGAAAAATCTAGAGGCAAGGATGGAGATGGAGATATTGTAAGTGATGATGAAGATAAAAGGGGGTGA

Protein sequence

MVKHLFERLKLGFRPNELLTLVDKPSKRCILWCQKFVQTLDRVLMDVEVDGRKSLLQKENREDYSKLVKQSTLLDGDFHGEMVANHQMKKIPTDLEDPVDQEGESSEGEDGLEEGIPAGDGGEYGGGTPGEESGEVPEGDGGEPGEYVPGDEDGDSGEGVEGDDRGESGEEDTGNNGEDSGEMEPGDNQEKSRGKDGDGDIVSDDEDKRG
Homology
BLAST of CcUC04G063460 vs. NCBI nr
Match: XP_038882385.1 (spore wall protein 2-like [Benincasa hispida])

HSP 1 Score: 159.1 bits (401), Expect = 4.2e-35
Identity = 111/177 (62.71%), Postives = 129/177 (72.88%), Query Frame = 0

Query: 44  LMDVEVDGRKSLLQKENREDYSKLVKQSTLLDGDFHGEMVA-NHQMKKIPTDLEDPVDQE 103
           L+ +EVDGRKSLLQKE+RE+ +KL KQST+LD DFHG+MVA NHQMKK PTDLED  +QE
Sbjct: 13  LLSLEVDGRKSLLQKEDREEDAKLAKQSTILDADFHGKMVASNHQMKKFPTDLEDAGNQE 72

Query: 104 GESSEGEDGLEEGIPAGDGGEYGGGTPGEESGEVPE---GDGGEPGEYVPGDEDGDS--- 163
            ESSEG++GLEEGIP GD GEYG GTP  ESGEVPE    +GG+  E  PGD+ G+S   
Sbjct: 73  DESSEGDEGLEEGIPEGDEGEYGRGTPEGESGEVPEDTSNNGGDSEETEPGDDQGESKGD 132

Query: 164 ---GEGVEGDDRGESGEEDTGNNGEDSGEMEPGDNQEKSRGKDGDGDIVSDDEDKRG 211
              G+G + DD GES E D G+ G D G M   DNQ +SRG  GD DIV DD DKRG
Sbjct: 133 DGDGDG-DRDDEGESREGDLGDYGGDFGGMVHEDNQRESRGDHGDRDIVGDDVDKRG 188

BLAST of CcUC04G063460 vs. NCBI nr
Match: TYK09628.1 (hypothetical protein E5676_scaffold447G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.6e-18
Identity = 90/179 (50.28%), Postives = 108/179 (60.34%), Query Frame = 0

Query: 39  TLDRVLMDVEVDGRKSLLQKENREDYSKLVKQSTLLDGDFHGEMVANHQMKKIPTDLED- 98
           T+  +L+  +VDGRKSLLQKE R+D +KLV+QST LD DFHGEMV N+Q KK+PTDLED 
Sbjct: 15  TVSILLVSPKVDGRKSLLQKEGRDDSNKLVEQSTTLDADFHGEMVGNNQKKKLPTDLEDN 74

Query: 99  PVDQEGESSEGEDGLEEGIP---------AGDGGEYGGGTPGE--ESGEVPEGDGGEP-- 158
           P DQ+GE+SE E G EE +P         AGD G   G T GE  + G+  E  GG    
Sbjct: 75  PEDQKGENSEDEKGSEEDVPGDEEGESEEAGDDGGESGSTEGEYGDLGDCGEESGGPKDC 134

Query: 159 -GEYVPGDEDGDSGEGVEGDDRGE-------------SGEE-DTGNNGEDSGEMEPGDN 189
             E+  GD+DG + EG EG+  GE             SGEE    NNGEDS E  PGDN
Sbjct: 135 GAEF--GDDDGGAFEGDEGEAPGEESGEVPEYQGGGGSGEEVSRDNNGEDSEEKVPGDN 191

BLAST of CcUC04G063460 vs. NCBI nr
Match: KGN54678.1 (hypothetical protein Csa_012366 [Cucumis sativus])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 81/170 (47.65%), Postives = 106/170 (62.35%), Query Frame = 0

Query: 43  VLMDVEVDGRKSLLQKENREDYSKLVKQSTLLDGDFHGEMVANHQMKKIPTDLED-PVDQ 102
           +L+  EVDGRKSLLQKE R+D++KLVKQST LD DFHGEMV  +Q KK+PTDLED P DQ
Sbjct: 20  LLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMVGRNQKKKLPTDLEDNPEDQ 79

Query: 103 EGESSEGED--GLEEGIPAGDGGEYG--------GGTPGEESGEVPEGD-------GGEP 162
           +GE+SE ++    EE +P  + GEYG        G   G+ESG  P GD       GGE 
Sbjct: 80  KGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDESGG-PGGDFVYPNNCGGEF 139

Query: 163 GEYVPGDEDGDSGEGVEGDDRGESGE-EDTGNNGEDSGEMEPGDNQEKSR 194
           G+   G  +GD GEG   ++ GE+ E +D G +GE+    + G+   K +
Sbjct: 140 GDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKNGEEYSKEK 188

BLAST of CcUC04G063460 vs. ExPASy TrEMBL
Match: A0A5D3CEH4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold447G00230 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 7.8e-19
Identity = 90/179 (50.28%), Postives = 108/179 (60.34%), Query Frame = 0

Query: 39  TLDRVLMDVEVDGRKSLLQKENREDYSKLVKQSTLLDGDFHGEMVANHQMKKIPTDLED- 98
           T+  +L+  +VDGRKSLLQKE R+D +KLV+QST LD DFHGEMV N+Q KK+PTDLED 
Sbjct: 15  TVSILLVSPKVDGRKSLLQKEGRDDSNKLVEQSTTLDADFHGEMVGNNQKKKLPTDLEDN 74

Query: 99  PVDQEGESSEGEDGLEEGIP---------AGDGGEYGGGTPGE--ESGEVPEGDGGEP-- 158
           P DQ+GE+SE E G EE +P         AGD G   G T GE  + G+  E  GG    
Sbjct: 75  PEDQKGENSEDEKGSEEDVPGDEEGESEEAGDDGGESGSTEGEYGDLGDCGEESGGPKDC 134

Query: 159 -GEYVPGDEDGDSGEGVEGDDRGE-------------SGEE-DTGNNGEDSGEMEPGDN 189
             E+  GD+DG + EG EG+  GE             SGEE    NNGEDS E  PGDN
Sbjct: 135 GAEF--GDDDGGAFEGDEGEAPGEESGEVPEYQGGGGSGEEVSRDNNGEDSEEKVPGDN 191

BLAST of CcUC04G063460 vs. ExPASy TrEMBL
Match: A0A0A0KYS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420190 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.3e-16
Identity = 81/170 (47.65%), Postives = 106/170 (62.35%), Query Frame = 0

Query: 43  VLMDVEVDGRKSLLQKENREDYSKLVKQSTLLDGDFHGEMVANHQMKKIPTDLED-PVDQ 102
           +L+  EVDGRKSLLQKE R+D++KLVKQST LD DFHGEMV  +Q KK+PTDLED P DQ
Sbjct: 20  LLVSQEVDGRKSLLQKEGRDDFNKLVKQSTTLDADFHGEMVGRNQKKKLPTDLEDNPEDQ 79

Query: 103 EGESSEGED--GLEEGIPAGDGGEYG--------GGTPGEESGEVPEGD-------GGEP 162
           +GE+SE ++    EE +P  + GEYG        G   G+ESG  P GD       GGE 
Sbjct: 80  KGENSEADEKGSEEEDVPGEEEGEYGDLGDVGDLGDCGGDESGG-PGGDFVYPNNCGGEF 139

Query: 163 GEYVPGDEDGDSGEGVEGDDRGESGE-EDTGNNGEDSGEMEPGDNQEKSR 194
           G+   G  +GD GEG   ++ GE+ E +D G +GE+    + G+   K +
Sbjct: 140 GDDDGGALEGDDGEGPGSEESGEAPEDQDGGESGEEVSRDKNGEEYSKEK 188

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038882385.14.2e-3562.71spore wall protein 2-like [Benincasa hispida][more]
TYK09628.11.6e-1850.28hypothetical protein E5676_scaffold447G00230 [Cucumis melo var. makuwa][more]
KGN54678.12.6e-1647.65hypothetical protein Csa_012366 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CEH47.8e-1950.28Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A0A0KYS71.3e-1647.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G420190 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 145..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..210
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..210

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G063460.1CcUC04G063460.1mRNA