CcUC04G063410 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G063410
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCir_N domain-containing protein
LocationCicolChr04: 18949764 .. 18950447 (-)
RNA-Seq ExpressionCcUC04G063410
SyntenyCcUC04G063410
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GATGTAAGAATAGCCTCTGCTAAAATTGCAGCACTGAGAAGACTGATTGCCCCAGAAGCAGTACATGTGGCGGACCGGCCCATCACAAACTGGGGGCTGGTGGTTTGAGCCATCATCCAATATTTCATCAAACCCTCTTTCAATCTTTCAATTACTGGTTTGCCTCCTTTTCCATTTAAAGCACACTCTTTCGATGCTAATTCATGCCTTACACTATACTTCATTTCCAGGTAGCTCTTAGTTGATGGAACAACTGAAGCAGAAAAACTCAAGATGCCAAGCAAAACAAGCATCAAGATTAGAATGGAAACATGTTCTTTCATATAAACGTAGATCACTCCAGTTCCCATCTCCATACCCACGTTTACGATGAGGGTAATAACAAGAATCCCCAGAGCCATAACATTCATAAAGATTTCCTGATTTTCCATAGATCCAAGAGAAGGCATACAATTAGCCATGATGGTGCACATCAACACAGCACTACTTAGCTTTGCAAGCTGATCTTCTCTGCCAGGCATGGAGGTGTTGAGATCCACAGAAAGCTTGATGGCCACAGCTATCAAGGTTAGGGAAGTGGAGTTAAGAGTGAAGAACTTACAGGGAAACCAGAATTTTCTGTGGCGGATGCCGTGGATGAGATCGGCAGCCATTGCTAAGAGGCAGACCAACGAGGCTGCAGCT

mRNA sequence

GATGTAAGAATAGCCTCTGCTAAAATTGCAGCACTGAGAAGACTGATTGCCCCAGAAGCAGTACATGTGGCGGACCGGCCCATCACAAACTGGGGGCTGGTGCTCTTAGTTGATGGAACAACTGAAGCAGAAAAACTCAAGATGCCAAGCAAAACAAGCATCAAGATTAGAATGGAAACATGCATGGAGGTGTTGAGATCCACAGAAAGCTTGATGGCCACAGCTATCAAGGTTAGGGAAGTGGAGTTAAGAGTGAAGAACTTACAGGGAAACCAGAATTTTCTGTGGCGGATGCCGTGGATGAGATCGGCAGCCATTGCTAAGAGGCAGACCAACGAGGCTGCAGCT

Coding sequence (CDS)

GATGTAAGAATAGCCTCTGCTAAAATTGCAGCACTGAGAAGACTGATTGCCCCAGAAGCAGTACATGTGGCGGACCGGCCCATCACAAACTGGGGGCTGGTGCTCTTAGTTGATGGAACAACTGAAGCAGAAAAACTCAAGATGCCAAGCAAAACAAGCATCAAGATTAGAATGGAAACATGCATGGAGGTGTTGAGATCCACAGAAAGCTTGATGGCCACAGCTATCAAGGTTAGGGAAGTGGAGTTAAGAGTGAAGAACTTACAGGGAAACCAGAATTTTCTGTGGCGGATGCCGTGGATGAGATCGGCAGCCATTGCTAAGAGGCAGACCAACGAGGCTGCAGCT

Protein sequence

DVRIASAKIAALRRLIAPEAVHVADRPITNWGLVLLVDGTTEAEKLKMPSKTSIKIRMETCMEVLRSTESLMATAIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA
Homology
[Close]
BLAST of CcUC04G063410 vs. NCBI nr
Match: KAG7027441.1 (hypothetical protein SDJN02_11454, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 98.2 bits (243), Expect = 4.9e-17
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 0 

Query: 62  MEVLRSTESLMATAIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
           MEVLRSTESLMATAI+VREVELRVKNLQGNQNFLWR PW RSAAIAKRQT EA A
Sbjct: 1   MEVLRSTESLMATAIRVREVELRVKNLQGNQNFLWRKPWTRSAAIAKRQTKEAVA 55

[Close]
BLAST of CcUC04G063410 vs. NCBI nr
Match: KAG7027440.1 (hypothetical protein SDJN02_11453, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.4 bits (241), Expect = 8.4e-17
Identity = 51/58 (87.93%), Postives = 53/58 (91.38%), Query Frame = 0 

Query: 4  IASAKIAALRRLIAPEAVHVADRPITNWGLVLLVDGTTEAEKLKMPSKTSIKIRMETC 62
          +ASAKI ALRR IAPEAVHVADRPITN GL L VDGTT+AEKLKMPSKTSIKIRMETC
Sbjct: 1  MASAKIPALRRQIAPEAVHVADRPITNCGLQLFVDGTTKAEKLKMPSKTSIKIRMETC 58

[Close]
BLAST of CcUC04G063410 vs. NCBI nr
Match: BBH03145.1 (hypothetical protein Prudu_013932 [Prunus dulcis])

HSP 1 Score: 83.6 bits (205), Expect = 1.3e-12
Identity = 52/102 (50.98%), Postives = 62/102 (60.78%), Query Frame = 0 

Query: 15  LIAPEAVHVADRPITNWGLVLLVDGTTEAEKLKMPSKTSIKIRMETCMEVLRSTESLMAT 74
           +IAPEAVHVA+RPITNWGL +                    IR+ T   + RST++L AT
Sbjct: 163 IIAPEAVHVAERPITNWGLEIFT------------------IRVIT---MFRSTDNLTAT 222

Query: 75  AIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
            IKV+EV L  KNL GNQ+F  R PW  SAAIA RQ  +AAA
Sbjct: 223 PIKVKEVALMEKNLLGNQSFQCRKPWTTSAAIAIRQARDAAA 243

[Close]
BLAST of CcUC04G063410 vs. NCBI nr
Match: KVH99869.1 (hypothetical protein Ccrd_021899 [Cynara cardunculus var. scolymus])

HSP 1 Score: 63.2 bits (152), Expect = 1.8e-06
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 66  RSTESLMATAIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
           RST S  ATAI V EV LRVKNL GNQ+F WR PW  SAAIA+ Q  +A A
Sbjct: 89  RSTGSFSATAINVMEVALRVKNLHGNQSFRWRKPWKTSAAIARVQRRDAIA 139

[Close]
BLAST of CcUC04G063410 vs. ExPASy TrEMBL
Match: A0A4Y1RGF7 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_013932 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 6.1e-13
Identity = 52/102 (50.98%), Postives = 62/102 (60.78%), Query Frame = 0 

Query: 15  LIAPEAVHVADRPITNWGLVLLVDGTTEAEKLKMPSKTSIKIRMETCMEVLRSTESLMAT 74
           +IAPEAVHVA+RPITNWGL +                    IR+ T   + RST++L AT
Sbjct: 163 IIAPEAVHVAERPITNWGLEIFT------------------IRVIT---MFRSTDNLTAT 222

Query: 75  AIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
            IKV+EV L  KNL GNQ+F  R PW  SAAIA RQ  +AAA
Sbjct: 223 PIKVKEVALMEKNLLGNQSFQCRKPWTTSAAIAIRQARDAAA 243

[Close]
BLAST of CcUC04G063410 vs. ExPASy TrEMBL
Match: A0A103XZR8 (Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021899 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 8.5e-07
Identity = 33/51 (64.71%), Postives = 36/51 (70.59%), Query Frame = 0 

Query: 66  RSTESLMATAIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
           RST S  ATAI V EV LRVKNL GNQ+F WR PW  SAAIA+ Q  +A A
Sbjct: 89  RSTGSFSATAINVMEVALRVKNLHGNQSFRWRKPWKTSAAIARVQRRDAIA 139

[Close]
BLAST of CcUC04G063410 vs. ExPASy TrEMBL
Match: A0A6N2L6G3 (Cir_N domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS125390 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 62  MEVLRSTESLMATAIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
           M   RST+SL ATAI V EV L  +NL GNQ+F WR P MRSAAIA  Q  EAAA
Sbjct: 1   MAAFRSTDSLTATAIMVSEVALMEENLLGNQSFCWRDPRMRSAAIAMAQAREAAA 55

[Close]
BLAST of CcUC04G063410 vs. ExPASy TrEMBL
Match: A0A6N2KQU3 (Cir_N domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS125390 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 62  MEVLRSTESLMATAIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
           M   RST+SL ATAI V EV L  +NL GNQ+F WR P MRSAAIA  Q  EAAA
Sbjct: 1   MAAFRSTDSLTATAIMVSEVALMEENLLGNQSFCWRDPRMRSAAIAMAQAREAAA 55

[Close]
BLAST of CcUC04G063410 vs. ExPASy TrEMBL
Match: A0A6N2KQR3 (Cir_N domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_LOCUS125390 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.9e-06
Identity = 35/55 (63.64%), Postives = 38/55 (69.09%), Query Frame = 0 

Query: 62  MEVLRSTESLMATAIKVREVELRVKNLQGNQNFLWRMPWMRSAAIAKRQTNEAAA 117
           M   RST+SL ATAI V EV L  +NL GNQ+F WR P MRSAAIA  Q  EAAA
Sbjct: 1   MAAFRSTDSLTATAIMVSEVALMEENLLGNQSFCWRDPRMRSAAIAMAQAREAAA 55

The following BLAST results are available for this feature:
BLAST of CcUC04G063410 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7027441.14.9e-1790.91hypothetical protein SDJN02_11454, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG7027440.18.4e-1787.93hypothetical protein SDJN02_11453, partial [Cucurbita argyrosperma subsp. argyro... [more]
BBH03145.11.3e-1250.98hypothetical protein Prudu_013932 [Prunus dulcis][more]
KVH99869.11.8e-0664.71hypothetical protein Ccrd_021899 [Cynara cardunculus var. scolymus][more]
BLAST of CcUC04G063410 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G063410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4Y1RGF76.1e-1350.98Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_013932 PE=4 SV=1[more]
A0A103XZR88.5e-0764.71Uncharacterized protein OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_021... [more]
A0A6N2L6G31.9e-0663.64Cir_N domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_L... [more]
A0A6N2KQU31.9e-0663.64Cir_N domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_L... [more]
A0A6N2KQR31.9e-0663.64Cir_N domain-containing protein (Fragment) OS=Salix viminalis OX=40686 GN=SVIM_L... [more]
BLAST of CcUC04G063410 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G063410.1CcUC04G063410.1mRNA