CcUC04G063350 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G063350
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCCHC-type domain-containing protein
LocationCicolChr04: 18843886 .. 18844335 (+)
RNA-Seq ExpressionCcUC04G063350
SyntenyCcUC04G063350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGTGTTAAATGTGAGAGTGAGTTTAGAGGTTGTTTGACAATTCCTAGTAAGGCTATGGAAAAGTGTGAGACTAATTTAACTTTGGTCGAATAAAATAGACATCACAATCAGATCATAGTCAAATGGGCACATTAACTGTATTGTGAAAGAAAGGGACAAACTTTGGCAGTTTACAGGAATTTATGGTACCTCCGTAAAGGCGCTTTACCATGAGACATGGGATCTATTGAGGCAGTTGAGAGATAACAATATGATGTCTTGGATACTCAATGGAGATTTCAACAAGATTCTTTCCATGAGTGAGAAAAGTGGTAAGGCGATGCAAAGATCCAATGCATTGAATGAGTTCAGTGAAACAATTTATACATGTAGGCTAATAGACTCATACTGTATTGGAGAAAATTTTACATGGTGTAATAATCGCTTTAATGGAGAAATTATCTAG

mRNA sequence

ATGACTTCAAATGGGCACATTAACTGTATTGTGAAAGAAAGGGACAAACTTTGGCAGTTTACAGGAATTTATGGTACCTCCGTAAAGGCGCTTTACCATGAGACATGGGATCTATTGAGGCAGTTGAGAGATAACAATATGATGTCTTGGATACTCAATGGAGATTTCAACAAGATTCTTTCCATGAGTGAGAAAAGTGGTAAGGCGATGCAAAGATCCAATGCATTGAATGAGTTCAGTGAAACAATTTATACATGTAGGCTAATAGACTCATACTGTATTGGAGAAAATTTTACATGGTGTAATAATCGCTTTAATGGAGAAATTATCTAG

Coding sequence (CDS)

ATGACTTCAAATGGGCACATTAACTGTATTGTGAAAGAAAGGGACAAACTTTGGCAGTTTACAGGAATTTATGGTACCTCCGTAAAGGCGCTTTACCATGAGACATGGGATCTATTGAGGCAGTTGAGAGATAACAATATGATGTCTTGGATACTCAATGGAGATTTCAACAAGATTCTTTCCATGAGTGAGAAAAGTGGTAAGGCGATGCAAAGATCCAATGCATTGAATGAGTTCAGTGAAACAATTTATACATGTAGGCTAATAGACTCATACTGTATTGGAGAAAATTTTACATGGTGTAATAATCGCTTTAATGGAGAAATTATCTAG

Protein sequence

MTSNGHINCIVKERDKLWQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKILSMSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII
Homology
BLAST of CcUC04G063350 vs. NCBI nr
Match: TXG54013.1 (hypothetical protein EZV62_019269 [Acer yangbiense])

HSP 1 Score: 98.6 bits (244), Expect = 3.6e-17
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 0

Query: 3   SNGHINCIVKERDKL-WQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKILS 62
           + GHI+ ++K+ D L W+FTG YG  + +    +W LLR+L   + + WI+ GDFN+IL 
Sbjct: 454 TKGHIDAVIKDSDSLVWRFTGFYGEPIPSFRMHSWSLLRRLGRMSNLPWIVVGDFNEILQ 513

Query: 63  MSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
           + EK G  ++ +  ++ F E +  C L+D   +G  +TW N +F GE+I
Sbjct: 514 LDEKKGGVIRSNTTMSSFREAVDDCALMDMGYVGNKYTWSNRQFKGELI 562

BLAST of CcUC04G063350 vs. NCBI nr
Match: XP_042969161.1 (uncharacterized protein LOC122301863 [Carya illinoinensis])

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 44/110 (40.00%), Postives = 60/110 (54.55%), Query Frame = 0

Query: 3   SNGHINCIV--KERDKLWQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKIL 62
           S  H+N IV  +E D  WQFTG+YG    A    +W LL  L+    M+W+  GDFN+IL
Sbjct: 84  SRWHVNSIVLEEENDPTWQFTGLYGHPEVAKRSSSWQLLHMLKPTTPMAWLCAGDFNEIL 143

Query: 63  SMSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
              EK G A +    + EF + +  C L D    G+ +TW NN+F G+ I
Sbjct: 144 YQKEKLGGASRPYKQIEEFRQVVERCGLSDLQSRGQKYTWANNKFGGDFI 193

BLAST of CcUC04G063350 vs. NCBI nr
Match: XP_042969166.1 (uncharacterized protein LOC122301869 [Carya illinoinensis])

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-15
Identity = 43/110 (39.09%), Postives = 59/110 (53.64%), Query Frame = 0

Query: 3   SNGHINCIVKERDK--LWQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKIL 62
           S  H+N IV E +    WQFTG+YG    A    +W LL  L+    M+W+  GDFN+IL
Sbjct: 84  SRWHVNSIVLEEENGPAWQFTGLYGHPEVAKRSSSWQLLHMLKPTTPMAWLCAGDFNEIL 143

Query: 63  SMSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
              EK G A +    + EF + +  C L D    G+ +TW NN+F G+ I
Sbjct: 144 YQKEKLGGASRPYKQIEEFRQVVERCGLSDLQSRGQKYTWANNKFGGDFI 193

BLAST of CcUC04G063350 vs. NCBI nr
Match: KAG6666594.1 (hypothetical protein CIPAW_01G042200 [Carya illinoinensis])

HSP 1 Score: 90.9 bits (224), Expect = 7.4e-15
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 0

Query: 3   SNGHINCIVKERD---KLWQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKI 62
           S  HI+  +++     + W FTG+YG    +  HETW LLR ++  +   W+L GDFN++
Sbjct: 41  SKSHIHASIQDSSTDCEPWYFTGVYGQPEASRRHETWSLLRSIKVPSDQGWLLMGDFNEV 100

Query: 63  LSMSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNR 105
           LS++EK+G   +    + EF E +  C L+D   IG  FTWCN R
Sbjct: 101 LSINEKTGGRARTDRQMQEFHEVLDDCGLLDLGYIGNPFTWCNKR 145

BLAST of CcUC04G063350 vs. NCBI nr
Match: KAF5464386.1 (hypothetical protein F2P56_014464 [Juglans regia])

HSP 1 Score: 89.7 bits (221), Expect = 1.7e-14
Identity = 43/105 (40.95%), Postives = 60/105 (57.14%), Query Frame = 0

Query: 3   SNGHINCIVKER---DKLWQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKI 62
           S  HI+  +++    D  W FTG+YG    +  HETW+LLR L+  +   W+L GDFN++
Sbjct: 84  SRSHIHATLQDNTTADDSWFFTGVYGQPDPSRRHETWNLLRSLKVPSDKGWLLMGDFNEV 143

Query: 63  LSMSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNR 105
           LS +EK G  ++    +  FSE I  C L+D    G  FTWCN R
Sbjct: 144 LSPNEKCGGRIRTDKQIQAFSEVIDDCELLDLGFKGNPFTWCNKR 188

BLAST of CcUC04G063350 vs. ExPASy TrEMBL
Match: A0A5C7H9Y2 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019269 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.7e-17
Identity = 41/109 (37.61%), Postives = 67/109 (61.47%), Query Frame = 0

Query: 3   SNGHINCIVKERDKL-WQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKILS 62
           + GHI+ ++K+ D L W+FTG YG  + +    +W LLR+L   + + WI+ GDFN+IL 
Sbjct: 454 TKGHIDAVIKDSDSLVWRFTGFYGEPIPSFRMHSWSLLRRLGRMSNLPWIVVGDFNEILQ 513

Query: 63  MSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
           + EK G  ++ +  ++ F E +  C L+D   +G  +TW N +F GE+I
Sbjct: 514 LDEKKGGVIRSNTTMSSFREAVDDCALMDMGYVGNKYTWSNRQFKGELI 562

BLAST of CcUC04G063350 vs. ExPASy TrEMBL
Match: A0A2N9EDG5 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS556 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.1e-15
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 0

Query: 3   SNGHINCIVKERDKL-WQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKILS 62
           S+ HI+  V + D + W+FTG YG    AL H +W LLR+L+  N M W+L GDFN+I++
Sbjct: 586 SSYHIDAHVLQDDGMAWRFTGFYGHPETALRHWSWSLLRRLKGINNMPWLLLGDFNEIVA 645

Query: 63  MSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
           + EK G+  +    +  F E +  C L+D   +G  FTW NNR + E++
Sbjct: 646 LEEKFGREDRSFRQMAGFREALADCSLVDLGFVGPEFTWSNNREDDELV 694

BLAST of CcUC04G063350 vs. ExPASy TrEMBL
Match: A0A2N9GJ35 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27322 PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 43/109 (39.45%), Postives = 62/109 (56.88%), Query Frame = 0

Query: 3   SNGHINCIVKERDKL-WQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKILS 62
           S  HI+  V + D L W+ TG YG     L H +W LLR LR  + + W++ GDFN+I  
Sbjct: 415 SEHHIDGEVVQNDGLRWRLTGFYGYPEAHLRHRSWSLLRHLRSISDVPWMIFGDFNEITR 474

Query: 63  MSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
           + EK+G+  + +N +  F E +  C L D    G  FTW NNR NG+++
Sbjct: 475 LEEKAGREDRNANQMAAFREALLDCSLQDMGFTGTEFTWSNNRENGDLV 523

BLAST of CcUC04G063350 vs. ExPASy TrEMBL
Match: A0A2N9HB41 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36676 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.4e-14
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 0

Query: 6   HINC-IVKERDKLWQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKILSMSE 65
           HI+  ++++   +W+FTG YG    AL H +W LLR+L   N + W+L GDFN+I+++ E
Sbjct: 591 HIDAHVIQDDGMVWRFTGFYGHPETALRHWSWSLLRRLHGINNLPWLLLGDFNEIVALEE 650

Query: 66  KSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
           K G+  +    +  F E +  C L+D   +G  FTW NNR + +++
Sbjct: 651 KFGREDRSFRQMARFREALADCSLVDLGFVGPEFTWSNNREDDDLV 696

BLAST of CcUC04G063350 vs. ExPASy TrEMBL
Match: A0A2N9J2I4 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58697 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.8e-14
Identity = 41/109 (37.61%), Postives = 59/109 (54.13%), Query Frame = 0

Query: 3   SNGHINCIVKER-DKLWQFTGIYGTSVKALYHETWDLLRQLRDNNMMSWILNGDFNKILS 62
           S  HI+ I+  R ++ W+FT  YG       H++WDLLR L     + W   GDFN+I+ 
Sbjct: 487 SQSHIDTIIDGRSEEAWRFTCFYGAPETHHRHQSWDLLRSLHSQFSIPWCCAGDFNEIIR 546

Query: 63  MSEKSGKAMQRSNALNEFSETIYTCRLIDSYCIGENFTWCNNRFNGEII 111
           + EK G+A +  + +  F E +  C   D    G  FTWCNNRF+G  +
Sbjct: 547 LEEKQGRAQRPDSQMQAFREALDDCGFHDLGYSGAPFTWCNNRFSGPTV 595

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TXG54013.13.6e-1737.61hypothetical protein EZV62_019269 [Acer yangbiense][more]
XP_042969161.11.5e-1540.00uncharacterized protein LOC122301863 [Carya illinoinensis][more]
XP_042969166.17.4e-1539.09uncharacterized protein LOC122301869 [Carya illinoinensis][more]
KAG6666594.17.4e-1539.05hypothetical protein CIPAW_01G042200 [Carya illinoinensis][more]
KAF5464386.11.7e-1440.95hypothetical protein F2P56_014464 [Juglans regia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5C7H9Y21.7e-1737.61CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01926... [more]
A0A2N9EDG52.1e-1540.37CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS556 ... [more]
A0A2N9GJ351.4e-1439.45Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27322 PE=3 SV=1[more]
A0A2N9HB411.4e-1436.79Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS36676 PE=4 SV=1[more]
A0A2N9J2I41.8e-1437.61Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS58697 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 2..109
e-value: 2.3E-7
score: 32.8
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 5..108

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G063350.1CcUC04G063350.1mRNA