CcUC04G063080 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G063080
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	exosome complex component RRP4 homolog
Location	CicolChr04: 18411559 .. 18417362 (+)
RNA-Seq Expression	CcUC04G063080
Synteny	CcUC04G063080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGAAAAAGAAACCTACTACAGCGTCAGTACCTTCTTCCTTCCTTCCCCTCTCATTCAAGCAGCCGTACTGTCGCCCGCCTGCTCAGTCTCCTTCTCCGGTGAGCCTCCAGCAGCCACAGGCGGAAGGCAGCGACGACTGGAACCCACAACCACTCGAACGCCCAGCTCTGTCGTTGACGGCGGCTTACGTTCACTGAGCGCCACTTCAAGGCCGCCTAGGCCTTTGCAGCATCGTTTCTTCTCCGTTCGAGACTCCCGCGCGAACAACAGGTTGTTCAACACGTTTTTGATGACTGTGTGGGTCTTGCAGCGGCGTTTCTGACCTAGGGTAAGTTTTCGGCTGTTACCCACACTCCGATTAACCTCAAATCAGTTTAGCCATAACATTTAAGGTTCAGATTTGCAAGTTCGGACGTTTTTGAACACCAACCAGCAAGGTACAGAGTATTTTCAGGAAGATTTGGTAAGGATAATGGCTTTAGTTTTCTTTCTGAATTGGATTGAAGTGTTTGAATGTTATTCTGAATCCTTCGAACTCTTCTGTTGTTATGTTTGGGTCAGTTTCGAAGTATTCAGTTAAGGTTCTATAAGTATTAATATGCTTCAGAACGTTTCAGACTCGATTAAAGTATGCTAATCAGTCTTAACTTGTTAAAGCTTGCTGTTTGTAGTTTTGGACTTCTTCGGAGTGATCGGTTAACATTTACGATAGATTTTGGGTAAGGATATCCCTCTTGAACACTCTCAATTTTAATTAATGTTTTTGAATTGAGTTCTAATTTCTAAACTGTCTTGATTGTTTAGACTTCGAGGAAGTTGACATTTGTTCAAGAAAGTAAATTTTTGATTGAGAATTGCAGGATTGTCTATTGAGGTAAATAGTTTCTGCATCTCTTCCAAGATATAAAATTGACTGTTGTGATTTGTTAAAGAGTTTGAAAGTATGTTTTGAACATTTGGAGGTATGTTTTATGTGATTTCAGGATTGACTGAAATTGTTTTGTATGTTTTGAATTGTTTTTGGGAAATGAAAGTATGTGACTATTTGAAATGATTTTGGATTGGAATTATGTATGTTTTAGCTTGGTCACTTGTGAAAGAATTTTGGTCGATTCGATAGGGCTGTCCGGATATGCCAAGTTTTGTTTTGGGGATTGTATGCTTATGTTGAAGTAGCCAAATGTGGAGTTGATGATAAATGATATGATTGAAAATTATTCGTGAGAAGGCACTTAATAGTGGTTTGGCATTCCAATGAAGATTAATGTGTGTGTTACACTTATATGGCCTCCCACTTAAGAAGTTGTAATGAATGTTATGGTCAACTTAATTGACATATCTTAATGAATGAAATGATTGGTATTATCGACGGATAATCACACATGTTTGGGCTACTCCAACTATGCATTTTTTCCATTCTATTAAAAGAAAGTATGGATTCATTGAAAGCCTTGGTAAATGGAAGTATTGATTGTCTAAAAGTTTTGTCTGATTGAAAGTATTGGTCGTTTGAAAGTTTTGTTTTGTTGAAACTTGAAAGTATTGGGTTTATTTTTGGATAAGAAACAATTTCATTGATTGAATAAAATATCCAAAAATATATAAGGATATACAAAAGCCCATTGGTAGGGAATACAAAAGATGTCTCCAATTAGCAATAAGGAAAGAAACTATGACTCTGAAAGTCCGGTAAATTTTTACACCAAAAGAAAAAGCATTGAATTAAGCTGTATCTAAGATGTCCTTTGAAGTCTTGACTTTTTCATGGAAGATTTTTGTATAAGTCTTTGGCAATTGAGGGACTACTAGCAGTGAGATGATTGTACAAAGACTTTGTGGAGAAGTATCCATTAATGTCAAGCTTCCAGGGCCATATGTCATTTCGGAAGGTTTTGTTTTGCTGAAAGTCTGTTTGAAGGTTTCAGTTTGAACGTCTGGTTTAGAAAGCTTATTTGATTGAAAATTTTGGATTCTGAAAGCACTATGTCATGAAGTTGAAAGATTTGCAAAGATTCTTATTCTTCTTATTATTTTTCATTTAAGAATGCTTTGAAAGAAAATGAATCTTGACGCTTGATATGGGACTTGCTTATTGAGTATTTTTGTACTCAATTTCACTTTTCCAAAATGCTTTTAGATGAAGGATCGGGTAAAAGTTTTCAAAATAGTGAAGTTTGGTGTTTTGGCATAAGGCATCGAAAGATGTTTTTTTAGGATTTGATAGTTTGACTTAGAAATTGTTTGTAATAAGTTGCTTATGGTGATTTGTATACGTTGTAAAGGTTTATAATTGATATGTTCTGCATTACAATTTTAACTGCTATATTGGAAAATACAGGTTGTTTCACCTTTTTTTTTTTTTTTTTTTGCAATCACGTGCTATATCTTTGTAAATATTTTGTTATAGTATGTATATATTGGTGATGAACATCATGCAGCACCCCTATGTACTAACGTAGAAATTTTCTAAATTCAGATATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTCCAAAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGTATATAATTCCTCACTATTTTTATATAATAGCTGCTTGGATTCTGTAATTGCCAGGGCATTATATGCATTGAGATATAATTGAAATTTGTATACAGGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGGTTGTCCATGAAACTTTGTTATTTGGTCTTTCTCGATGATAGTTTAAAGTTTCCCTTTCTTTGGTCTATTGCTATGATATCTTTTATGATTGATATAATTGTCTGTACCTATTAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTAGAACCAGATGCTTTTTATTAATTTTTTGGTTTTACATAAATTTATAATAGAGACGTTGGTGAGTAGAACAGACAAGAAAAATTTATTCTGGAGTCATGGTCATGATGTTGTAAATAGGAAAAATGTGTTACTATGACTCCCCCATGCCATTTTTTTTATATCATTTGATGCGATCTTTTTCAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGGTATTGGAGTCTTCCCTTTTGTTATGGAAATAATGGTGCATCCTCTTGCATCCTCTTGCATCAGATGGTGAACTAGCTATGCCTTCTGCTGAATTTAATAGAAATTTTACTGCAAAATTGCTGCAACTGATCCACTCTCTCTCTCTCTCTCTCAAGAGTGGTTGCATTTGTTGTAACGCTGGATTAATTGTATTGTTTTTATTTCTAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGAAGAAAATGATGTCATTTGTGTAAGTTTTATAGCTTTTACTTTCACCTATCAACATCAGGAAGAATATCTAGTATCAAGTTTCTCACGTGTCGTACATATAAAGTTTTCTCATATATTTTTACAATTTTGAAGAATTAAAAATAATTGAGGCGTGTCCAAGCTAGCCTGGACACTAGTGTATATATATATATATTCTCTTACATAGGACGTTATTGTGAGTACCATGGAGTTAGAACCAAAGTTTTAAGTTCTTCCTTGACCATTAGGCCAAAGCATGATAGTTATGAACTTTTGTCACTCAACTCACAAGCCCTTTGTAAAATGTATAGTGCATAGGCTCCGACATGTTAAATAGATAGTTTCATCTTCGGCCCCTCGCATGGTTCTGGCCAGGTGTCTCAGCTTGAGTGCCTTTTTCTTTTGTGCCTTGTTGCTCTTCACCAAGGTTCCTAAATTTTCTTGACATTCTGTTGCTGTAGCCTGTAGGTGTCTTAACTCAAGTGTCTATTTGTGCCTTTTTCCCTTTAGTGCCATTTCAAAAGTCTTTTCTTTTACTTTTCTCTCCTTTTACTAAATGCAAGTGATGCAATATATATCCATTATTGCTTCTTACTCTCACCTCTCAGATTCAAGTCAAGTCCTATGCCTTGCACAATGGCCTGAAGAGATGTACCTTGGCACTTGAGTTTACCGTGCACTACAATAAATAAACACCACTCTCATCAGATAGTTCATGCATAATTTCCAGAAAAAATAACATCACTACATCTTATCTCAGGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGGTAAAAGAAGTCTCTTTCTTAGGCTTCTGGATGTCGATGTAAACAAAATAAACTTTAGAAGCGAAATTTTCTACGTCTCCCACATCTTCATTGGTTTCTTAGGATTCCATAGAAAAATTCTTGATAGCATGTGAATAGTGATTTTTGGTTTCTTAGGATTCCATAGAAAAATTCTTGATAGCATGTGAATAGTGATTTATGGACGAATCTTCTGGGGAAACTCTAATGGTTAAAACGAATTGTGATCATAAAGTTTTTAGGGTTCTGTTTGGTAACAAGGAACTATTTGGTTTTTTGTTTTTCGTTTTTGAAAAGTAAGCTATTTCGATTCAGTTTCTTACAATAGTTTTCATCTTAAGTAGAAGAGTTGAATTCTAAGCCAAATTTAAAAAACAAAAACATGTTTTTAAAAGCTATTTTTTTTAGTTTTCAAAACATGGGCATAGTTTTTGAAAACATTGGTAGGAAGTAGATAATAAAACAAGAAATTTATAGATGAAATTGGTGTTTATAGGCTTAATTTTCAAAAACTAAAAATAAAAAACGAAATGGTTACCAAACAGAACCTACATTTGCTTTTTTTTTTTTTTTTTGGCTCAGTATGATAAGTTCAAAATCCATAAGGGTACCTATATTTGAATATGATATCTTTGATGCAATGGTTAATAGATTCCTAACTTTTCTGGCATCATCTCATCTTGTTACTTCATGACTGTTGTGAATAATAAGATTTGTGCATTTGTATATCCAGCTTGAACGTGGTCAGGTGCTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCAAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGAATATACTCCATTAGCAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTTGTAATGGAGATAGTTAGTCTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGCATTCTCACAGCAGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAAAGGGGGTGATGGTTTTGGAGAATTTTAGATTACCACCACTTGGTCTCTGTAGTATTAAACAGTTTAGAATGCAATATTTGCTTAATTATTCTATAGTACGTGGTTTCATAAATGTCGAAGAATTACTTTTAGGATTTTACTATGTCATATTATTGGTTTAGATTAGTACTTGACGAAACATAACTTTATTAGATTTAATATTTCTGCTGATGATTGTATCTTTATCATGCAT

mRNA sequence

AATAGAAAAAGAAACCTACTACAGCGTCAGTACCTTCTTCCTTCCTTCCCCTCTCATTCAAGCAGCCGTACTGTCGCCCGCCTGCTCAGTCTCCTTCTCCGGTGAGCCTCCAGCAGCCACAGGCGGAAGGCAGCGACGACTGGAACCCACAACCACTCGAACGCCCAGCTCTGTCGTTGACGGCGGCTTACGTTCACTGAGCGCCACTTCAAGGCCGCCTAGGCCTTTGCAGCATCGTTTCTTCTCCGTTCGAGACTCCCGCGCGAACAACAGGTTGTTCAACACGTTTTTGATGACTGTGTGGGTCTTGCAGCGGCGTTTCTGACCTAGGATTTGCAAGTTCGGACGTTTTTGAACACCAACCAGCAAGGTACAGAGTATTTTCAGGAAGATTTGTTTTGGACTTCTTCGGAGTGATCGGTTAACATTTACGATAGATTTTGGACTTCGAGGAAGTTGACATTTGTTCAAGAAAGTAAATTTTTGATTGAGAATTGCAGGATTGTCTATTGAGATATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTCCAAAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGGTGCTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCAAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGAATATACTCCATTAGCAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTTGTAATGGAGATAGTTAGTCTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGCATTCTCACAGCAGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAAAGGGGGTGATGGTTTTGGAGAATTTTAGATTACCACCACTTGGTCTCTGTAGTATTAAACAGTTTAGAATGCAATATTTGCTTAATTATTCTATAGTACGTGGTTTCATAAATGTCGAAGAATTACTTTTAGGATTTTACTATGTCATATTATTGGTTTAGATTAGTACTTGACGAAACATAACTTTATTAGATTTAATATTTCTGCTGATGATTGTATCTTTATCATGCAT

Coding sequence (CDS)

ATGAGAGGTTTACAGATTTCTTTGAATCATACCCAGAAGATTCGGCTCCAAAGAGCCCGAGAAAGGCTCGAATCTCTCTCTTCAAAGGCCAATTCTGATGCTTCTGTTATAGTTGCTGATACTATTCCTCTCAATTACGAGGATGGTGTCCTCAAGGGACATGGGACCCTTGACTTGAATGGAGAAGTTGTTGCCACTATTTGTGGAGTGGTTGAGCGAGTCAATAAGCTTATCTATGTACGTGCCTTACGTGCCAGATATAAACCGGAGGTTGGCGATATTGTAGTGGGACGTGTTACAGAGGTTGCTCCTAAACGTTGGAGATTGGATATAAATTATAGCCAAGATGCAGTTTTGATGCTTTCTTCGATGAACTTGCCTGATGGTATTCAGAGGAGGCGAACTGCTGTTGATGAACTCAACATGAGGAGCATTTTTGAAGAAAATGATGTCATTTGTGCCGAAGTACGTGGTCTTCAGCATGATGGGCTACACCTTCAAGCAAGAAGCCAGAAGTATGGGAAGCTTGAACGTGGTCAGGTGCTCACAGTTTCACCATATCTAGTAAAGAGACGCAAACAACACTTCCATCATTTGGAGCAATATGGTATTGACCTAATACTTGGATGCAATGGATTTATCTGGATTGGGGAGCATGTTGATCCAAAAGAGGATATGATGATAGAGGATCAAGTTAATATATCTGAACAAAAGGGTTCAAAATTTGAAGGCACTTTTGGTAACCAAGTGCAAGAAAGAGAATATACTCCATTAGCAACACGGCAGAATATATGCAGAACTGCAAATGCGATTCGGGTATTGTCTATCTTAGGTTTCATAATTACAGTAGAAGTTGTAATGGAGATAGTTAGTCTAAGTATTTCTATGAACATTGATGTGCATGAAATGCTCGGTTCGGAGTTCTGCATTCTCACAGCAGAAAAAGAGGTCGAACGACGTAGTTTGAGTAAGAAAAGGGGGTGA

Protein sequence

MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGSKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDVHEMLGSEFCILTAEKEVERRSLSKKRG

Homology

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BLAST of CcUC04G063080 vs. NCBI nr
Match: XP_038882865.1 (exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882866.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882867.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882868.1 exosome complex component RRP4 homolog isoform X2 [Benincasa hispida])

HSP 1 Score: 607.8 bits (1566), Expect = 5.4e-170
Identity = 308/327 (94.19%), Postives = 318/327 (97.25%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQISLNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTV  YLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG 
Sbjct: 181 LLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKGP 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTF NQVQ+R YTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Sbjct: 241 KFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNIDV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKEVERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEVERRTSSKKRG 327

[Close]

BLAST of CcUC04G063080 vs. NCBI nr
Match: XP_038882864.1 (exosome complex component RRP4 homolog isoform X1 [Benincasa hispida])

HSP 1 Score: 607.8 bits (1566), Expect = 5.4e-170
Identity = 308/327 (94.19%), Postives = 318/327 (97.25%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQISLNHTQKIRLQRA+ERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN
Sbjct: 38  MRGLQISLNHTQKIRLQRAQERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 97

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEV+ATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 98  GEVIATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 157

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 158 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 217

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTV  YLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMMI+DQ+N SEQKG 
Sbjct: 218 LLTVPSYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMIDDQINKSEQKGP 277

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTF NQVQ+R YTPL TRQNICRTANAIRVLSILGFI+TVEV+MEIVSLSISMNIDV
Sbjct: 278 KFEGTFENQVQQRVYTPLETRQNICRTANAIRVLSILGFIMTVEVIMEIVSLSISMNIDV 337

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKEVERR+ SKKRG
Sbjct: 338 HEMLGSEFCVLTAEKEVERRTSSKKRG 364

[Close]

BLAST of CcUC04G063080 vs. NCBI nr
Match: KAG6606437.1 (Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 598.6 bits (1542), Expect = 3.3e-167
Identity = 300/327 (91.74%), Postives = 315/327 (96.33%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of CcUC04G063080 vs. NCBI nr
Match: XP_023533481.1 (exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_023533482.1 exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 596.7 bits (1537), Expect = 1.2e-166
Identity = 299/327 (91.44%), Postives = 313/327 (95.72%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSL IS+NIDV
Sbjct: 241 KFEGNFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLGISLNIDV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of CcUC04G063080 vs. NCBI nr
Match: XP_022995373.1 (exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995375.1 exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995376.1 exosome complex component RRP4 homolog [Cucurbita maxima])

HSP 1 Score: 595.5 bits (1534), Expect = 2.8e-166
Identity = 299/327 (91.44%), Postives = 314/327 (96.02%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of CcUC04G063080 vs. ExPASy Swiss-Prot
Match: Q9ZVT7 (Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 PE=1 SV=1)

HSP 1 Score: 426.0 bits (1094), Expect = 3.8e-118
Identity = 215/327 (65.75%), Postives = 266/327 (81.35%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QVLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKG 240
           Q+L V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKD-EEMIS 242

Query: 241 SKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID 300
           S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCILTAEKEVERRSLSKKR 327
           +H+MLGSEF ++ AE E ERR   +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

[Close]

BLAST of CcUC04G063080 vs. ExPASy Swiss-Prot
Match: Q2KID0 (Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 1.3e-46
Identity = 106/214 (49.53%), Postives = 141/214 (65.89%), Query Frame = 0


Query: 13  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSESLGRESKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIW+    + KED
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWVYPTPEHKED 214

[Close]

BLAST of CcUC04G063080 vs. ExPASy Swiss-Prot
Match: Q8VBV3 (Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.3e-46
Identity = 107/213 (50.23%), Postives = 141/213 (66.20%), Query Frame = 0


Query: 13  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL +AR+ L     + +    V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPKARKPLSESLGRDSKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYNGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWI---GEHVD 222
           +K HFH L   G  +ILG NGFIWI    EH D
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKD 213

[Close]

BLAST of CcUC04G063080 vs. ExPASy Swiss-Prot
Match: Q13868 (Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2)

HSP 1 Score: 185.3 bits (469), Expect = 1.1e-45
Identity = 106/214 (49.53%), Postives = 140/214 (65.42%), Query Frame = 0


Query: 13  KIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLNGEVVATICGVVE 72
           ++RL  AR+ L     +      V+  DTI    + G ++GHGT     +++A++ G VE
Sbjct: 4   EMRLPVARKPLSERLGRDTKKHLVVPGDTI--TTDTGFMRGHGTYMGEEKLIASVAGSVE 63

Query: 73  RVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLMLSSMNLPDGIQR 132
           RVNKLI V+AL+ RY  EVGDIVVGR+TEV  KRW+++ N   D+VL+LSSMNLP G  R
Sbjct: 64  RVNKLICVKALKTRYIGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELR 123

Query: 133 RRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERGQVLTVSPYLVKR 192
           RR+A DEL MR   +E D+I AEV+ +  DG + L  RS KYGKL +G ++ VSP LVKR
Sbjct: 124 RRSAEDELAMRGFLQEGDLISAEVQAVFSDGAVSLHTRSLKYGKLGQGVLVQVSPSLVKR 183

Query: 193 RKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKED 226
           +K HFH L   G  +ILG NGFIWI    + KE+
Sbjct: 184 QKTHFHDL-PCGASVILGNNGFIWIYPTPEHKEE 214

[Close]

BLAST of CcUC04G063080 vs. ExPASy Swiss-Prot
Match: Q09704 (Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp4 PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.3e-45
Identity = 107/257 (41.63%), Postives = 156/257 (60.70%), Query Frame = 0


Query: 51  LKGHGTLDLNGEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLD 110
           ++GHGT   +G + A++ G V+RVNKLI V+ LR++Y PE+GD+++G++ EV PKRW++D
Sbjct: 71  MRGHGTYFEDGGIYASVAGSVQRVNKLISVKPLRSKYVPEIGDLIIGKIAEVQPKRWKVD 130

Query: 111 INYSQDAVLMLSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQAR 170
           I   Q+AVLMLSS+NLP GIQRR+   DEL MRS F+E D++ AEV+    DG + +  R
Sbjct: 131 IGAKQNAVLMLSSINLPGGIQRRKLETDELQMRSFFQEGDLLVAEVQQYFSDGSVSIHTR 190

Query: 171 SQKYGKLERGQVLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIE 230
           S KYGKL  G  L V P LV R K H + L   G+D+IL  NG++W+ +H + +      
Sbjct: 191 SLKYGKLRNGVFLKVPPALVVRSKSHAYALAG-GVDIILSVNGYVWVSKHNENQ-----H 250

Query: 231 DQVNISEQKGSKFEGTFGNQVQERE-YTPL-ATRQNICRTANAIRVL-----SILGFIIT 290
             V+I+  +    E  + N+  E + YT L  +R +IC    A R L     SI  F  +
Sbjct: 251 SSVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLASRSLPLTQASITNFYES 310

Query: 291 VEVVMEIVSLSISMNID 300
             V   +  L++  N+D
Sbjct: 311 SLVFSNLQDLTVPKNMD 321

[Close]

BLAST of CcUC04G063080 vs. ExPASy TrEMBL
Match: A0A6J1K7S0 (exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC111490943 PE=4 SV=1)

HSP 1 Score: 595.5 bits (1534), Expect = 1.3e-166
Identity = 299/327 (91.44%), Postives = 314/327 (96.02%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDL 
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLY 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of CcUC04G063080 vs. ExPASy TrEMBL
Match: A0A6J1EXY1 (exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC111437483 PE=4 SV=1)

HSP 1 Score: 594.3 bits (1531), Expect = 3.0e-166
Identity = 298/325 (91.69%), Postives = 313/325 (96.31%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLN TQKIRLQRA E LES+SSKANSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 1   MRGLQVSLNQTQKIRLQRALETLESISSKANSDASVVVADTIPLNYEDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLDINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMR+IFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRTIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDP EDMM+ED +N SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPTEDMMVEDPINKSEQKGS 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEG+FGNQVQER YTPL TRQNICRTANAIRVLSILGFI++VEV+ME VSLSIS+NIDV
Sbjct: 241 KFEGSFGNQVQERIYTPLETRQNICRTANAIRVLSILGFIMSVEVIMETVSLSISLNIDV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKK 326
           HEMLGSEFC+LTAEKE ERR+ SKK
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKK 325

[Close]

BLAST of CcUC04G063080 vs. ExPASy TrEMBL
Match: A0A6J1HGD9 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111464056 PE=4 SV=1)

HSP 1 Score: 592.8 bits (1527), Expect = 8.7e-166
Identity = 301/327 (92.05%), Postives = 312/327 (95.41%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQISLN TQKIRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQKIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVERVNKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGKLERGQ
Sbjct: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKLERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFIWIGEHVDP EDMMIEDQVN SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIWIGEHVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTFGNQVQER YTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS S+NI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSFSLNINV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of CcUC04G063080 vs. ExPASy TrEMBL
Match: A0A6J1HVC7 (exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111467017 PE=4 SV=1)

HSP 1 Score: 578.2 bits (1489), Expect = 2.2e-161
Identity = 294/327 (89.91%), Postives = 310/327 (94.80%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQISLN TQ+IRLQRA E LES+SSKANSDASVIVADTIPLNY+DGVLKGHGTLDLN
Sbjct: 1   MRELQISLNQTQRIRLQRALELLESISSKANSDASVIVADTIPLNYDDGVLKGHGTLDLN 60

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVATICGVVER+NKLIYVRALRARYKPEVGDI+VGRVTEVAPKRWRL+INYSQDAVLM
Sbjct: 61  GEVVATICGVVERINKLIYVRALRARYKPEVGDIIVGRVTEVAPKRWRLNINYSQDAVLM 120

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRR+TA DELNMRSIFEENDVICAEVRG QHDGLHLQARSQKYGK+ERGQ
Sbjct: 121 LSSMNLPDGIQRRQTADDELNMRSIFEENDVICAEVRGFQHDGLHLQARSQKYGKVERGQ 180

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +LTVSPYLVKRRKQHFHHLEQYGIDLI GCNGFI IGE VDP EDMMIEDQVN SEQKGS
Sbjct: 181 LLTVSPYLVKRRKQHFHHLEQYGIDLIFGCNGFIRIGERVDPTEDMMIEDQVNKSEQKGS 240

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGTFGNQVQER YTPL TRQNICRTANAIRVLS LGFI+TVEV+ME VSLS+S+NI+V
Sbjct: 241 KFEGTFGNQVQERVYTPLETRQNICRTANAIRVLSNLGFIMTVEVIMETVSLSLSLNINV 300

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKE ERR+ SKKRG
Sbjct: 301 HEMLGSEFCVLTAEKEAERRTSSKKRG 327

[Close]

BLAST of CcUC04G063080 vs. ExPASy TrEMBL
Match: A0A1S3B5H2 (exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486036 PE=4 SV=1)

HSP 1 Score: 575.9 bits (1483), Expect = 1.1e-160
Identity = 295/327 (90.21%), Postives = 310/327 (94.80%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MRGLQ+SLNHTQKIRL+RA+ERL+SLSSK NSDASV+VADTIPLNYEDGVLKGHGTLDLN
Sbjct: 15  MRGLQLSLNHTQKIRLERAQERLKSLSSKGNSDASVVVADTIPLNYEDGVLKGHGTLDLN 74

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GEVVA+ICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM
Sbjct: 75  GEVVASICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 134

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 180
           LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ
Sbjct: 135 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDGLHLQARSQKYGKLERGQ 194

Query: 181 VLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKGS 240
           +L VSPYL+KRRKQHFHHL+QYGIDLILGCNGFIWIGEHVDPKED MIED V+  EQK  
Sbjct: 195 LLIVSPYLIKRRKQHFHHLDQYGIDLILGCNGFIWIGEHVDPKEDAMIEDHVDKPEQKAL 254

Query: 241 KFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNIDV 300
           KFEGT    VQE  YTPL TRQNICRTANAIRVLS LGFI+TVEV+MEIV+LSIS+NIDV
Sbjct: 255 KFEGT----VQE-VYTPLETRQNICRTANAIRVLSTLGFIMTVEVIMEIVNLSISLNIDV 314

Query: 301 HEMLGSEFCILTAEKEVERRSLSKKRG 328
           HEMLGSEFC+LTAEKEVERRS SKKRG
Sbjct: 315 HEMLGSEFCVLTAEKEVERRSSSKKRG 336

[Close]

BLAST of CcUC04G063080 vs. TAIR 10
Match: AT1G03360.1 (ribosomal RNA processing 4 )

HSP 1 Score: 426.0 bits (1094), Expect = 2.7e-119
Identity = 215/327 (65.75%), Postives = 266/327 (81.35%), Query Frame = 0


Query: 1   MRGLQISLNHTQKIRLQRARERLESLSSKANSDASVIVADTIPLNYEDGVLKGHGTLDLN 60
           MR LQ+ L+ TQK+R +RA ERL+SLSS ANSDASVIV D+IP+N++D  LKGHGT +++
Sbjct: 3   MRKLQLPLSQTQKVRFERAIERLQSLSSSANSDASVIVTDSIPVNHDDAFLKGHGTSEVD 62

Query: 61  GEVVATICGVVERVNKLIYVRALRARYKPEVGDIVVGRVTEVAPKRWRLDINYSQDAVLM 120
           GE++AT+CGVVERV+KL+YVR LRARYKPEVGDIVVGRV EVA KRWR+++N++QD VLM
Sbjct: 63  GELLATVCGVVERVDKLVYVRTLRARYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLM 122

Query: 121 LSSMNLPDGIQRRRTAVDELNMRSIFEENDVICAEVRGLQHDG-LHLQARSQKYGKLERG 180
           LSSMN+PDGIQRRRT+VDELNMR+IF E+DV+CAEVR  QHDG L LQARSQKYGKLE+G
Sbjct: 123 LSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQARSQKYGKLEKG 182

Query: 181 QVLTVSPYLVKRRKQHFHHLEQYGIDLILGCNGFIWIGEHVDPKEDMMIEDQVNISEQKG 240
           Q+L V PYLVKR K HFH++E  GIDLI+GCNGFIW+GEHV+ ++ M I+DQ +  E   
Sbjct: 183 QLLKVDPYLVKRSKHHFHYVESLGIDLIIGCNGFIWVGEHVEVRDPMAIDDQKD-EEMIS 242

Query: 241 SKFEGTFGNQVQEREYTPLATRQNICRTANAIRVLSILGFIITVEVVMEIVSLSISMNID 300
           S   G      +E+ + PL TRQ ICR  NAIRVLS LGF +T+EV+ME V+LS S NID
Sbjct: 243 SSSTG------KEQSHIPLETRQTICRIGNAIRVLSNLGFTVTLEVIMETVNLSNSKNID 302

Query: 301 VHEMLGSEFCILTAEKEVERRSLSKKR 327
           +H+MLGSEF ++ AE E ERR   +K+
Sbjct: 303 IHDMLGSEFHVVVAENEAERRRTKRKK 322

The following BLAST results are available for this feature:

BLAST of CcUC04G063080 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882865.1	5.4e-170	94.19	exosome complex component RRP4 homolog isoform X2 [Benincasa hispida] >XP_038882...	[more]
XP_038882864.1	5.4e-170	94.19	exosome complex component RRP4 homolog isoform X1 [Benincasa hispida]	[more]
KAG6606437.1	3.3e-167	91.74	Exosome complex component RRP4-like protein, partial [Cucurbita argyrosperma sub...	[more]
XP_023533481.1	1.2e-166	91.44	exosome complex component RRP4 homolog [Cucurbita pepo subsp. pepo] >XP_02353348...	[more]
XP_022995373.1	2.8e-166	91.44	exosome complex component RRP4 homolog [Cucurbita maxima] >XP_022995374.1 exosom...	[more]

BLAST of CcUC04G063080 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVT7	3.8e-118	65.75	Exosome complex component RRP4 homolog OS=Arabidopsis thaliana OX=3702 GN=RRP4 P...	[more]
Q2KID0	1.3e-46	49.53	Exosome complex component RRP4 OS=Bos taurus OX=9913 GN=EXOSC2 PE=2 SV=1	[more]
Q8VBV3	2.3e-46	50.23	Exosome complex component RRP4 OS=Mus musculus OX=10090 GN=Exosc2 PE=1 SV=1	[more]
Q13868	1.1e-45	49.53	Exosome complex component RRP4 OS=Homo sapiens OX=9606 GN=EXOSC2 PE=1 SV=2	[more]
Q09704	3.3e-45	41.63	Exosome complex component rrp4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 2...	[more]

BLAST of CcUC04G063080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K7S0	1.3e-166	91.44	exosome complex component RRP4 homolog OS=Cucurbita maxima OX=3661 GN=LOC1114909...	[more]
A0A6J1EXY1	3.0e-166	91.69	exosome complex component RRP4 homolog OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1HGD9	8.7e-166	92.05	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita moschata OX=3662 ...	[more]
A0A6J1HVC7	2.2e-161	89.91	exosome complex component RRP4 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN...	[more]
A0A1S3B5H2	1.1e-160	90.21	exosome complex component RRP4 homolog isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]

BLAST of CcUC04G063080 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G03360.1	2.7e-119	65.75	ribosomal RNA processing 4	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..29
None	No IPR available	GENE3D	2.40.50.100		coord: 36..87 e-value: 3.1E-17 score: 63.9
None	No IPR available	GENE3D	2.40.50.140		coord: 88..177 e-value: 5.2E-19 score: 70.0
None	No IPR available	PANTHER	PTHR21321:SF4	EXOSOME COMPLEX COMPONENT RRP4	coord: 11..320
None	No IPR available	CDD	cd05789	S1_Rrp4	coord: 86..176 e-value: 2.20833E-33 score: 116.495
None	No IPR available	SUPERFAMILY	110324	Ribosomal L27 protein-like	coord: 44..82
IPR022967	RNA-binding domain, S1	SMART	SM00316	S1_6	coord: 90..169 e-value: 1.2E-4 score: 31.5
IPR004088	K Homology domain, type 1	PFAM	PF15985	KH_6	coord: 179..219 e-value: 1.9E-12 score: 47.4
IPR026699	Exosome complex RNA-binding protein 1/RRP40/RRP4	PANTHER	PTHR21321	PNAS-3 RELATED	coord: 11..320
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 85..176
IPR036612	K Homology domain, type 1 superfamily	SUPERFAMILY	54791	Eukaryotic type KH-domain (KH-domain type I)	coord: 179..321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G063080.1	CcUC04G063080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0000178	exosome (RNase complex)
molecular_function	GO:0003723	RNA binding