CcUC04G062750 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G062750
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	sigma factor binding protein 2, chloroplastic
Location	CicolChr04: 17620095 .. 17620586 (-)
RNA-Seq Expression	CcUC04G062750
Synteny	CcUC04G062750

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCCCGCGCCGGCACTGGAAACAACCACAGAATCCTAGACGCCATTCACGGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGTGGCGGCGCCTCCTCCTCAGACCTTCTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA

mRNA sequence

ATGGACGCCCGCGCCGGCACTGGAAACAACCACAGAATCCTAGACGCCATTCACGGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGTGGCGGCGCCTCCTCCTCAGACCTTCTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Coding sequence (CDS)

ATGGACGCCCGCGCCGGCACTGGAAACAACCACAGAATCCTAGACGCCATTCACGGGCGTAAACCCACGAAGAAAACGAAACAACCCAACAAAATAAAACCCATCAAAGTTGTGTACATATCCAACCCCATGAAAGTTCAAACCAGTGCTTCTGAATTCATGGCTTTAGTCCAAGAACTCACCGGCCAAAACGCTGACTTTCCCGACCCCTCTAAATTCCCCCCCTCCGCCGTCTGTGGCGGCGCCTCCTCCTCAGACCTTCTCCACAACACCGCATCCGGCGGCGATGACGACGATGATGGTGCTAGTAATCTCATGATGAATAATAACAACCCTTCACTTGCCGTCGAGCTGCCGGCGGAGGACGACTTTCTTGGTAGTATTTACAACGACTTTGAAGACCTGATTTTTCCTCCTCCGGTGATCGGAAACTTCTCTGGGTTGCTTCCGGCGGCGGCAGCGGCGGTTGTCTATGAATCTTATGCAAGGTGA

Protein sequence

MDARAGTGNNHRILDAIHGRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVELPAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR

Homology

[Close]

BLAST of CcUC04G062750 vs. NCBI nr
Match: XP_038882812.1 (sigma factor binding protein 2, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 270.8 bits (691), Expect = 7.8e-69
Identity = 139/163 (85.28%), Postives = 151/163 (92.64%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQEL 60
           M+A A TGNNHRILDA++ RKPTKKTKQPNK KPIKVVYISNPMKVQTSAS+FMALVQEL
Sbjct: 1   MNAGADTGNNHRILDAVNRRKPTKKTKQPNKKKPIKVVYISNPMKVQTSASKFMALVQEL 60

Query: 61  TGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVELPA 120
           TG++ADFPDPSKF PSAVCGGA+SSDLLHNTASGG DD+ GASNL+MNNNN SLAVELP 
Sbjct: 61  TGRDADFPDPSKFSPSAVCGGAASSDLLHNTASGGGDDEHGASNLIMNNNNCSLAVELPV 120

Query: 121 EDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           +DD LGS Y+DF+DLIFPPPVIGNFSGLLP AAAAVVYESYAR
Sbjct: 121 DDDILGSFYDDFDDLIFPPPVIGNFSGLLP-AAAAVVYESYAR 162

[Close]

BLAST of CcUC04G062750 vs. NCBI nr
Match: XP_008455708.1 (PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 126/165 (76.36%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++ RKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  A+S+D L+NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 139

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 140 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of CcUC04G062750 vs. NCBI nr
Match: KAA0025974.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 238.8 bits (608), Expect = 3.3e-59
Identity = 126/165 (76.36%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++ RKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  A+S+D L+NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of CcUC04G062750 vs. NCBI nr
Match: TYK04210.1 (sigma factor binding protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 125/165 (75.76%), Postives = 139/165 (84.24%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++ RKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSK PPSAVC  A+S+D L+NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of CcUC04G062750 vs. NCBI nr
Match: KAE8649682.1 (hypothetical protein Csa_012221 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.1e-57
Identity = 124/165 (75.15%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA   TG++HR LDA++ RKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC GA+S+D L+NT S G  +DDGA+NL++N+NN SL  E+
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSG-GEDDGATNLIVNSNNSSLVDEV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of CcUC04G062750 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.9e-07
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 20 RKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFPPS 77
          + P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQ+A D  P+P   P S
Sbjct: 25 KSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

[Close]

BLAST of CcUC04G062750 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-06
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 22 PTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV 79
          P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQ+A    PS    +AV
Sbjct: 24 PKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

[Close]

BLAST of CcUC04G062750 vs. ExPASy TrEMBL
Match: A0A5A7SJV9 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002890 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 126/165 (76.36%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++ RKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  A+S+D L+NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 164

[Close]

BLAST of CcUC04G062750 vs. ExPASy TrEMBL
Match: A0A1S3C276 (sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103495816 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.6e-59
Identity = 126/165 (76.36%), Postives = 140/165 (84.85%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++ RKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 20  MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 79

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC  A+S+D L+NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 80  ELTGQDADFPDPSKFPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 139

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 140 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPMAAVVYESNAR 183

[Close]

BLAST of CcUC04G062750 vs. ExPASy TrEMBL
Match: A0A5D3BYM2 (Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00110 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 6.0e-59
Identity = 125/165 (75.76%), Postives = 139/165 (84.24%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQPNK--IKPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA A TGNN R LDA++ RKP KKTKQ NK   KPIKVVYISNPMKVQTSASEFMALVQ
Sbjct: 1   MDAGAATGNNPRTLDAVYRRKPAKKTKQSNKKLKKPIKVVYISNPMKVQTSASEFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSK PPSAVC  A+S+D L+NT SGG  DDDGASNL++N+NNPSL  ++
Sbjct: 61  ELTGQDADFPDPSKLPPSAVCDDAASTDQLYNTVSGG-GDDDGASNLIVNSNNPSLVDDV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFPPPV+GN SGLLP   AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPPPVMGNLSGLLPGPVAAVVYESNAR 164

[Close]

BLAST of CcUC04G062750 vs. ExPASy TrEMBL
Match: A0A0A0L3J8 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 5.1e-58
Identity = 124/165 (75.15%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MDARAGTGNNHRILDAIHGRKPTKKTKQP-NKI-KPIKVVYISNPMKVQTSASEFMALVQ 60
           MDA   TG++HR LDA++ RKPTKKTKQP N++ KPIKVVYISNPMKVQTSAS FMALVQ
Sbjct: 1   MDAGTATGSDHRTLDAVYRRKPTKKTKQPKNRLKKPIKVVYISNPMKVQTSASGFMALVQ 60

Query: 61  ELTGQNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVEL 120
           ELTGQ+ADFPDPSKFPPSAVC GA+S+D L+NT S G  +DDGA+NL++N+NN SL  E+
Sbjct: 61  ELTGQDADFPDPSKFPPSAVCDGAASTDQLYNTISSG-GEDDGATNLIVNSNNSSLVDEV 120

Query: 121 PAEDDFLGSIYNDFEDLIFPPPVIGNFSGLLPAAAAAVVYESYAR 164
           PAEDD LGS Y+DF+DLIFP PVIGNFSGLLPA  AAVVYES AR
Sbjct: 121 PAEDDILGSFYDDFDDLIFPSPVIGNFSGLLPAPVAAVVYESNAR 164

[Close]

BLAST of CcUC04G062750 vs. ExPASy TrEMBL
Match: A0A6J1EY87 (sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439409 PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.3e-50
Identity = 113/163 (69.33%), Postives = 129/163 (79.14%), Query Frame = 0


Query: 3   ARAGTGNNHRILDAIHGRKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTG 62
           A  GTGN+HR+LD +H RKPTKKTKQPNK KPIKVVYISNPMKVQ SAS FMALVQ+LTG
Sbjct: 5   AGTGTGNSHRLLDGVHRRKPTKKTKQPNKNKPIKVVYISNPMKVQISASGFMALVQQLTG 64

Query: 63  QNADFPDPSKFPPSAVCGGASSSDLLHNTASGGDDDDDGASNLMMNNNNPSLAVELPAED 122
           Q+ADFPDPS FPP+AV   A+  D +HNT +  +         +MNNNNPSL VE+P ED
Sbjct: 65  QDADFPDPSTFPPAAVRDAAAFPD-IHNTTADAN---------LMNNNNPSLTVEIPMED 124

Query: 123 D-FLGSIYNDFEDLIFPPPVIGNFSGLLPAAAA-AVVYESYAR 164
           D FLGS Y+D +DLIFPPPVIGN+  LLPAAAA AV+YESYAR
Sbjct: 125 DPFLGSFYDDIDDLIFPPPVIGNYPALLPAAAATAVLYESYAR 157

[Close]

BLAST of CcUC04G062750 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 )

HSP 1 Score: 56.2 bits (134), Expect = 2.8e-08
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 20 RKPTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNA-DF-PDPSKFPPS 77
          + P +K K  +  KPIKV YISNPM+VQT AS+F  LVQELTGQ+A D  P+P   P S
Sbjct: 25 KSPKQKKKTTSTNKPIKVRYISNPMRVQTCASKFRELVQELTGQDAVDLQPEPIYSPSS 83

[Close]

BLAST of CcUC04G062750 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein )

HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 0


Query: 22 PTKKTKQPNKIKPIKVVYISNPMKVQTSASEFMALVQELTGQNADFPDPSKFPPSAV 79
          P +K K     KPIKV YISNPM+V+T  S+F  LVQELTGQ+A    PS    +AV
Sbjct: 24 PKQKRKSTTTHKPIKVRYISNPMRVETCPSKFRELVQELTGQDAADLPPSPTTFTAV 80

The following BLAST results are available for this feature:

BLAST of CcUC04G062750 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882812.1	7.8e-69	85.28	sigma factor binding protein 2, chloroplastic-like [Benincasa hispida]	[more]
XP_008455708.1	3.3e-59	76.36	PREDICTED: sigma factor binding protein 2, chloroplastic [Cucumis melo]	[more]
KAA0025974.1	3.3e-59	76.36	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
TYK04210.1	1.2e-58	75.76	sigma factor binding protein 2 [Cucumis melo var. makuwa]	[more]
KAE8649682.1	1.1e-57	75.15	hypothetical protein Csa_012221 [Cucumis sativus]	[more]

BLAST of CcUC04G062750 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LDH1	3.9e-07	57.63	Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]
O80669	2.6e-06	54.39	Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN...	[more]

BLAST of CcUC04G062750 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SJV9	1.6e-59	76.36	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A1S3C276	1.6e-59	76.36	sigma factor binding protein 2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A5D3BYM2	6.0e-59	75.76	Sigma factor binding protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0L3J8	5.1e-58	75.15	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G431960 PE=4 SV=...	[more]
A0A6J1EY87	1.3e-50	69.33	sigma factor binding protein 2, chloroplastic-like OS=Cucurbita moschata OX=3662...	[more]

BLAST of CcUC04G062750 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56710.1	2.8e-08	57.63	sigma factor binding protein 1	[more]
AT2G41180.1	1.8e-07	54.39	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 40..65 e-value: 2.1E-12 score: 46.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..108
None	No IPR available	PANTHER	PTHR33624:SF2	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 17..153
IPR039335	Sigma factor binding protein 1/2	PANTHER	PTHR33624	SIGMA FACTOR BINDING PROTEIN 1, CHLOROPLASTIC	coord: 17..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G062750.1	CcUC04G062750.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0051091	positive regulation of DNA-binding transcription factor activity