CcUC04G062650 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062650
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
Description50S ribosomal protein L2, chloroplastic
LocationCicolChr04: 16642761 .. 16647350 (+)
RNA-Seq ExpressionCcUC04G062650
SyntenyCcUC04G062650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GAACCATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCATTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTTTTTTTGGATGGTAAATATTTCTCAGAACATGGAGTGTAAATTAAACCCATGTTTGAATTGAAATTGAGATACTGATGCTAGTTCTTCCCCTCTGAATCAGACAGATTCATATCTGAAAGAGGTTGATAATAAGTTCTTTCAAAATTGACTATTTGTCCCTCTGTTAAAGGCGTTCCAGAAATGTCTGCAATCGAGTAAATAGTTCGACGAACGAATGGATCGAATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTCTGTGGAAAAGAATCGTTAGGTATGAATATGTTAGATACCTGTGACTCGATTGGTGAAATAGTATCTCTCTCCAAAAAAGAGTATTTTTTTTACCGCCGCACAAAGAAAATATTTTGTTGCGAATGAAAAAGATATTGAGGAATTGTCCATACGTAAAATCATAATTATTGATATGGGCCTTTTCCACATAATCCACATAAAAAGGGAATCTTTTGTTACAATAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACAGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCTGTGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCAATCATCCAATTTGGTATCTTATTGAACAAAAATGGTGATATTGTTCCTCCAGTGATCAAGAATTTCGATTTTTGGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTTTTCAAATGAACGATTTGAAGACCTATTGATTCTAACAACTGATTGCAGAGTTGATCATTCGGACCTTTCAATTCATAGATGTGGATCTCCGACTTATGAATGGGGATATTCCCGAAACTCACAAAGAAAAAAGGAAGTGAGTTAGACAAAAAGAGAAGAAACTTGGACAAAAAAACAAGTAACTTGGACAAAAAGAAACGAAGTGATTAGAAAAATCTTTTTTATCGATAACCACAGACCAATCAATCGAATATTGATTAATACGTAATTGATCGAACACTACTTGAAAATGAAAATGGCTCTTCTGCTCAGAAATGAAATGTTCCTGGAAATTCTTGCTCCCATTGGACCATTTGTATCTATATGCATTAGGATCCCGATTCATGGATCTCTCAGTTCGAGAAATCAAAATAAGAGGATCGAACCATTTCTTCTGACCCTTTTTCAAATTTGATAAATGTTGGTTGATCGTATATTTCATTATAGTTCTATGATTCAGAGTATCAGTTCCTATTTGATCCCTTTGAATTCCATATTCCAAGTTACATTCGGATCTATTCATTAAAAAGAATCGATTCAATACATTTCTTATGTACCCATAGGTGTTATATTGGATTTGAATCAGATTTCGGATCAATCTATATTGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCACTATTTTTTGTTTTGGATCTTCCAAATCATTCCCGGGGGAGGTCCGGACCTATTTTTTTCTGATCATTCGATAAAAAGATTCATTCTCTTCATAAAAAATAGGAGGTAGACCAATAAATATTTCTTTTTCGATTCATCCCTGGAGTTGATTACCTCATTCAAGAATTGTTTTTGATCCAATCCGTAGGAATCAACAGAAAAGGAAAATCCTTTATGATACACCAGATCCGGCTCGGTTATTGATAGAGTGAATAGATCTGCCATTTCTTGAAATCTCTCTTCTGATTAAAAAACGTGGTGTAACGTGTATCCCCTCCTGTTTCGGTCATGGAATAGATGAAATAAACAAATAAATGGATTTTTGTTCAAGAATAAAATCTTATTAGAACTGTCCATTTCATCCTTCGAAACCATAGCACATCCCGGATCTGATGAAATAGGATGAACTGAGATGGTATTTTGTAAATACATAATTATCTTGAATATATTAACTATTTCTTTATTTTCTGATCACTTGGAAGGGACAAAAGAAATATCTTGTTCTTTCTTCAACAATTTCTGATCTTTAGTGGACCTCTCAATAGGATTCGAAAGCATATCAAGTTCTGACCATCTGTCAGAGAAAAAAGAACGAATGGATCTTGTAGGATTTTCGAGAAATTCTTCGATTTCTTCCTGAAGCGGATGATTATTCATCTGCTTCTCACGTTTCATGAATAGCTGGGACATTGAGGAATATCCAGAAAAGCATTTAGGGAATCGGTCTGATTCTATCTCTGTTCGTTCCGTTTGAAGAAAGGAAGGATTCTAAAGAATCGATATTTCTTTTAGTTGTTGAATCTCTCTTTGATTGATCAATGTGTGATATTCCGAATCCTCATTACTAATGGAATCAAAATGATCTCTGGATTGATCAGAAGATCCTTTCAATTGGCTAGAATCCGTTACTTGAACGAAACTAGATCTTGTGGAATCATATTGAATATTTGACAAGACATTCTGTACCTTGCAAAAAAACCGATCCTTATTTATCAACCACACATTGTCTAACCAAATCCAATTCTCTCTCGATATGTTCCTCAAAAAATTCGATTCGTGCGGGGATTCATTCCCCAACTAAAGAAGAGATCTTGGCAGAATTGCCACATATGGAATTGAGCACAATTTTGCAAAGAAATAGCCCACTTGTTTCTCGAGAAGAGATGGGAAACATGCTCAATATCATTTGATTGAATAGTTGACCCAGCTCCTTGTTGTTTGAAGAAGCCCTCCACTTCAATTGGTATTTTTTCACGAAAGGCAACACATGAGATAACAAATCCAGTCTTTTACTAAAATTTCGAATAGCTGTCCCAAATTCATGTTGATTATGTTTTGCCTCTTCCTCGGAGAAAGACGATCAAACAATTCCCAATCATGGTCCTTGCAGATCTGATCATCCATATAATATACAAAAAGAAACTCCAGATATTTGATATCTGTCTCTTTGAATGAGATCTCCATTCCAGCGACGGTTTCATTAGATATCTTACAACTGGAATCCCTCTTTTTTCCGATCCAGTTCCTCCACCACCGCGAACCCCAGTTAGATTCAGGCATGATACACTTTTTAGTTATTGGGAGAACCCAAGTACTCTCTTTCGGATCCAGGAAACAGCTCTCAGAGATCTTTTTTCCTTTTGGAAGATACAGGAGCGAAACAATCAACCTATTAATATTGGAAGAGCCAAAAGATTCTTCCAATGAATCATTTCTGGGTCCAATGAAATTCATAGGTATAGGAAGAAACCCTGTCAAATAGAGATTTTTTCTTTCGACCATCTTTCGATTGTTAATACAATATGTAAGGACCGCTACTACAAATAGTACTACACCCTTGATCGTGAAATATCAATTGCTTGTTGAACCCTGTGAATTGCGTGAAAGTAAGATACCCCAAATTTGGGAGTCTAAGAGTTTTATAAAACGTTCTTGATGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTCTTGATCTTTCTCAATTCGAAAATCCAGGATTTGAATTGATATCCTTTCATTGAGTCCTCTAAATTGCATTGATTTATCCTAAAGATTTCATTTCAATTGGAACTTGGTTATTCACCATGTACGAGGATCCCCACTAAGCATCCATGGCTGAATGGTTAAAGCGCCCAACTCAAAGTTGGTGAATTCGTAGGATCAGTTCCTACTGGATGCACGCCAATGGGACCCTCCAATAAGTCTATTGGAATTGGCTCTGTATCGATGGAATCTCATCATCCATACATAACGAATTGGTGTGGTATATTCATATCATAACATATGAACAGTAAGAACTAGCATTCTTATTGACACTCGAACTTATAGGGAAGAAAATTTATGGATGGAATCAAATATGCAGTATTTATAGACAAAAGTATTCAGTTATTAGGGAAAAATCAATATACTTCTAATGTCGAATCAGGATCAACTAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGATAATAGCTATGAATAGTCATCGACTCCTGGGAAAGGGTAGAAGAATGGGACCTATTATGGGACATACAATGCACATTACAGACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCTACCTCTTAGAAAGAAAAGAACTTAAATCAAAATACTTAATAGCATGGTGATACATTTATACAAAACTTCTACCCCGAGCACATGCAATGGAGCTGTAAACAATTAAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGTGTTTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTATAATCGTAATCATAGAATACGACCCTAAT

mRNA sequence

GAACCATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCATTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTTTTTTTGGATGGTAAATATTTCTCAGAACATGGAGCGTTCCAGAAATGTCTGCAATCGAGTAAATAGTTCGACGAACGAATGGATCGAATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTCTGTGGAAAAGAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACAGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCTGAATCAACAGAAAAGGAAAATCCTTTATGATACACCAGATCCGGCTCGGAGCGAAACAATCAACCTATTAATATTGGAAGAGCCAAAAGATTCTTCCAATGAATCATTTCTGGGTCCAATGAAATTCATAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGTGTTTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTATAATCGTAATCATAGAATACGACCCTAAT

Coding sequence (CDS)

ATGGCATATATGTTTGGAATAGATTCCATTTTGAGAGAGTTGAAAAAGCACTATCTCGTTGAAAGGTTCTATACATCTGCCATTTCTCAAGGCATTTCTTTAGACAAAGACTCCGTTTTTTCCTTTTTTTGGATGGTAAATATTTCTCAGAACATGGAGCGTTCCAGAAATGTCTGCAATCGAGTAAATAGTTCGACGAACGAATGGATCGAATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTCTGTGGAAAAGAATCGTTAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTTGCTTTATAAAAAGAAGATATCAATGAACTTCTATGAAATGGTTTCACAGGATTTAGCCAATTGTCTTGATCGTGGGATATCATTGAGAAATAGGAATCTGAATCAACAGAAAAGGAAAATCCTTTATGATACACCAGATCCGGCTCGGAGCGAAACAATCAACCTATTAATATTGGAAGAGCCAAAAGATTCTTCCAATGAATCATTTCTGGGTCCAATGAAATTCATAGTAAAATCCAATCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGTGTTTATACCGTAAAATCGATTTTCGACGAAATGAAAAAGACATATATGGTATAATCGTAATCATAGAATACGACCCTAAT

Protein sequence

MAYMFGIDSILRELKKHYLVERFYTSAISQGISLDKDSVFSFFWMVNISQNMERSRNVCNRVNSSTNEWIESNWKMERFVQVIPFVTTLWKRIVRSRSDVDYSRIEVELLYKKKISMNFYEMVSQDLANCLDRGISLRNRNLNQQKRKILYDTPDPARSETINLLILEEPKDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGIIVIIEYDPN
Homology
[Close]
BLAST of CcUC04G062650 vs. NCBI nr
Match: YP_010047596.1 (ribosomal protein L2 [Pilea glauca (nom. nud.)] >YP_010047620.1 ribosomal protein L2 [Pilea glauca (nom. nud.)] >YP_010047854.1 ribosomal protein L2 [Pilea mollis] >YP_010047878.1 ribosomal protein L2 [Pilea mollis] >YP_010048202.1 ribosomal protein L2 [Pilea pumila] >YP_010048226.1 ribosomal protein L2 [Pilea pumila] >YP_010118317.1 ribosomal protein L2 [Pilea peploides] >YP_010118341.1 ribosomal protein L2 [Pilea peploides] >QPK42210.1 ribosomal protein L2 [Pilea glauca (nom. nud.)] >QPK42224.1 ribosomal protein L2 [Pilea glauca (nom. nud.)] >QPK42464.1 ribosomal protein L2 [Pilea mollis] >QPK42481.1 ribosomal protein L2 [Pilea mollis] >QPK42810.1 ribosomal protein L2 [Pilea pumila])

HSP 1 Score: 132.1 bits (331), Expect = 6.6e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. NCBI nr
Match: YP_010047768.1 (ribosomal protein L2 [Pilea thymifolia] >YP_010047792.1 ribosomal protein L2 [Pilea thymifolia] >YP_010048115.1 ribosomal protein L2 [Pilea microphylla] >YP_010048139.1 ribosomal protein L2 [Pilea microphylla] >QPK42379.1 ribosomal protein L2 [Pilea thymifolia] >QPK42397.1 ribosomal protein L2 [Pilea thymifolia] >QPK42728.1 ribosomal protein L2 [Pilea microphylla] >QPK42744.1 ribosomal protein L2 [Pilea microphylla])

HSP 1 Score: 132.1 bits (331), Expect = 6.6e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. NCBI nr
Match: YP_010156161.1 (ribosomal protein L2 [Pilea cavaleriei] >YP_010156184.1 ribosomal protein L2 [Pilea cavaleriei] >QQY85716.1 ribosomal protein L2 [Pilea cavaleriei] >QQY85766.1 ribosomal protein L2 [Pilea cavaleriei])

HSP 1 Score: 132.1 bits (331), Expect = 6.6e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. NCBI nr
Match: YP_010047682.1 (ribosomal protein L2 [Pilea peperomioides] >YP_010047706.1 ribosomal protein L2 [Pilea peperomioides] >QPK42293.1 ribosomal protein L2 [Pilea peperomioides] >QPK42309.1 ribosomal protein L2 [Pilea peperomioides])

HSP 1 Score: 131.7 bits (330), Expect = 8.6e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVGRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. NCBI nr
Match: YP_009176044.1 (ribosomal protein L2 [Ficus racemosa] >YP_009176068.1 ribosomal protein L2 [Ficus racemosa] >ALI30740.1 ribosomal protein L2 [Ficus racemosa] >ALI30764.1 ribosomal protein L2 [Ficus racemosa])

HSP 1 Score: 130.2 bits (326), Expect = 2.5e-26
Identity = 64/87 (73.56%), Postives = 70/87 (80.46%), Query Frame = 0 

Query: 162 INLLILEEPKDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK 221
           +N + +   K S+  +  G +   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK
Sbjct: 4   LNSMAIHLYKTSTPSTRKGAVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK 63

Query: 222 CLYRKIDFRRNEKDIYGIIVIIEYDPN 249
            LYRKIDFRRNEKDIYG IV IEYDPN
Sbjct: 64  RLYRKIDFRRNEKDIYGKIVTIEYDPN 90

[Close]
BLAST of CcUC04G062650 vs. ExPASy Swiss-Prot
Match: Q09MB2 (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-29
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  G +   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGRIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-29
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  G +   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGRIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy Swiss-Prot
Match: Q09WV5 (50S ribosomal protein L2, chloroplastic OS=Morus indica OX=248361 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-29
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  G +   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGAVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy Swiss-Prot
Match: A9L9D7 (50S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.5e-29
Identity = 63/78 (80.77%), Postives = 66/78 (84.62%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  G +   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRNGAVDRKVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGRIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy Swiss-Prot
Match: Q0G9P9 (50S ribosomal protein L2, chloroplastic OS=Daucus carota OX=4039 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.2e-28
Identity = 60/63 (95.24%), Postives = 60/63 (95.24%), Query Frame = 0 

Query: 186 VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGIIVIIEY 245
           VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFRRNEKDIYG IV IEY
Sbjct: 22  VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEY 81

Query: 246 DPN 249
           DPN
Sbjct: 82  DPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy TrEMBL
Match: A0A7T0ND51 (Ribosomal protein L2 OS=Pilea glauca (nom. nud.) OX=2789716 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy TrEMBL
Match: A0A7U3ST99 (Ribosomal protein L2 OS=Pilea pumila OX=24776 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy TrEMBL
Match: A0A7U1AS69 (Ribosomal protein L2 OS=Pilea peploides OX=344826 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy TrEMBL
Match: A0A7U3QCQ3 (Ribosomal protein L2 OS=Pilea microphylla OX=226284 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. ExPASy TrEMBL
Match: A0A7U1ARV2 (Ribosomal protein L2 OS=Pilea cavaleriei OX=1399722 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.2e-27
Identity = 64/78 (82.05%), Postives = 67/78 (85.90%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  GP+   VKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRKGPVDRQVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RNEKDIYG IV IEYDPN
Sbjct: 67  RNEKDIYGKIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 118.2 bits (295), Expect = 9.1e-27
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  G +   VKSNPRNNLI GQH CGKGRNARGIITA HRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RN KDIYG IV IEYDPN
Sbjct: 67  RNAKDIYGRIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 118.2 bits (295), Expect = 9.1e-27
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 0 

Query: 171 KDSSNESFLGPMKFIVKSNPRNNLIYGQHRCGKGRNARGIITAGHRGGGHKCLYRKIDFR 230
           K S+  +  G +   VKSNPRNNLI GQH CGKGRNARGIITA HRGGGHK LYRKIDFR
Sbjct: 7   KTSTPSTRNGAVDSQVKSNPRNNLICGQHHCGKGRNARGIITARHRGGGHKRLYRKIDFR 66

Query: 231 RNEKDIYGIIVIIEYDPN 249
           RN KDIYG IV IEYDPN
Sbjct: 67  RNAKDIYGRIVTIEYDPN 84

[Close]
BLAST of CcUC04G062650 vs. TAIR 10
Match: AT2G07715.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-06
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 0 

Query: 204 GRNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGIIVIIEYDPN 249
           GRN+ G IT  HRGGG K L R+ID +R+   + GI+  IEYDPN
Sbjct: 21  GRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSM-GIVESIEYDPN 64

[Close]
BLAST of CcUC04G062650 vs. TAIR 10
Match: ATMG00560.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-06
Identity = 25/45 (55.56%), Postives = 31/45 (68.89%), Query Frame = 0 

Query: 204 GRNARGIITAGHRGGGHKCLYRKIDFRRNEKDIYGIIVIIEYDPN 249
           GRN+ G IT  HRGGG K L R+ID +R+   + GI+  IEYDPN
Sbjct: 21  GRNSSGRITVFHRGGGSKRLLRRIDLKRSTSSM-GIVESIEYDPN 64

The following BLAST results are available for this feature:
BLAST of CcUC04G062650 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_010047596.16.6e-2782.05ribosomal protein L2 [Pilea glauca (nom. nud.)] >YP_010047620.1 ribosomal protei... [more]
YP_010047768.16.6e-2782.05ribosomal protein L2 [Pilea thymifolia] >YP_010047792.1 ribosomal protein L2 [Pi... [more]
YP_010156161.16.6e-2782.05ribosomal protein L2 [Pilea cavaleriei] >YP_010156184.1 ribosomal protein L2 [Pi... [more]
YP_010047682.18.6e-2782.05ribosomal protein L2 [Pilea peperomioides] >YP_010047706.1 ribosomal protein L2 ... [more]
YP_009176044.12.5e-2673.56ribosomal protein L2 [Ficus racemosa] >YP_009176068.1 ribosomal protein L2 [Ficu... [more]
BLAST of CcUC04G062650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q09MB27.3e-2980.7750S ribosomal protein L2, chloroplastic OS=Citrus sinensis OX=2711 GN=rpl2-A PE=... [more]
Q4VZK57.3e-2980.7750S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=... [more]
Q09WV57.3e-2980.7750S ribosomal protein L2, chloroplastic OS=Morus indica OX=248361 GN=rpl2-A PE=3... [more]
A9L9D79.5e-2980.7750S ribosomal protein L2, chloroplastic OS=Lemna minor OX=4472 GN=rpl2 PE=2 SV=1[more]
Q0G9P91.2e-2895.2450S ribosomal protein L2, chloroplastic OS=Daucus carota OX=4039 GN=rpl2-A PE=3 ... [more]
BLAST of CcUC04G062650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7T0ND513.2e-2782.05Ribosomal protein L2 OS=Pilea glauca (nom. nud.) OX=2789716 GN=rpl2 PE=4 SV=1[more]
A0A7U3ST993.2e-2782.05Ribosomal protein L2 OS=Pilea pumila OX=24776 GN=rpl2 PE=4 SV=1[more]
A0A7U1AS693.2e-2782.05Ribosomal protein L2 OS=Pilea peploides OX=344826 GN=rpl2 PE=4 SV=1[more]
A0A7U3QCQ33.2e-2782.05Ribosomal protein L2 OS=Pilea microphylla OX=226284 GN=rpl2 PE=4 SV=1[more]
A0A7U1ARV23.2e-2782.05Ribosomal protein L2 OS=Pilea cavaleriei OX=1399722 GN=rpl2 PE=4 SV=1[more]
BLAST of CcUC04G062650 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00830.19.1e-2775.64ribosomal protein L2 [more]
ATCG01310.19.1e-2775.64ribosomal protein L2 [more]
AT2G07715.14.0e-0655.56Nucleic acid-binding, OB-fold-like protein [more]
ATMG00560.14.0e-0655.56Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 185..248
e-value: 5.4E-20
score: 73.3
NoneNo IPR availablePANTHERPTHR13691:SF5550S RIBOSOMAL PROTEIN L2, CHLOROPLASTICcoord: 182..248
IPR022666Ribosomal Proteins L2, RNA binding domainPFAMPF00181Ribosomal_L2coord: 204..248
e-value: 1.5E-11
score: 44.1
IPR002171Ribosomal protein L2PANTHERPTHR13691RIBOSOMAL PROTEIN L2coord: 182..248
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 182..248

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062650.1CcUC04G062650.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0016740 transferase activity