CcUC04G062470 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062470
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 15826529 .. 15826765 (-)
RNA-Seq ExpressionCcUC04G062470
SyntenyCcUC04G062470
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGGGCTTCAATACAACTTCTTTCCCACTGATCTCCTCTACCCTAAACCCTCTTCTTCTTCTTCTTCCTCAGAAGCCATTAATAGGGCAGGTGTCACCTTCAAAACCCCTCTAAGAGGCAATAAAGCTGAAGAAGATGATCATGGTGATGAACCCAAGAGCTTGACCATTCAAAAGGCTGATAGATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

mRNA sequence

ATGGCTGGGCTTCAATACAACTTCTTTCCCACTGATCTCCTCTACCCTAAACCCTCTTCTTCTTCTTCTTCCTCAGAAGCCATTAATAGGGCAGGTGTCACCTTCAAAACCCCTCTAAGAGGCAATAAAGCTGAAGAAGATGATCATGGTGATGAACCCAAGAGCTTGACCATTCAAAAGGCTGATAGATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

Coding sequence (CDS)

ATGGCTGGGCTTCAATACAACTTCTTTCCCACTGATCTCCTCTACCCTAAACCCTCTTCTTCTTCTTCTTCCTCAGAAGCCATTAATAGGGCAGGTGTCACCTTCAAAACCCCTCTAAGAGGCAATAAAGCTGAAGAAGATGATCATGGTGATGAACCCAAGAGCTTGACCATTCAAAAGGCTGATAGATCATCATTGATTCTCAAGCATCAAATCAAGACTTCTTCAACTTTCTAA

Protein sequence

MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLRGNKAEEDDHGDEPKSLTIQKADRSSLILKHQIKTSSTF
Homology
BLAST of CcUC04G062470 vs. NCBI nr
Match: KGN53975.1 (hypothetical protein Csa_018873 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.1e-24
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLRGNKAEED--DHGDEPKS--L 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKTPLRGNK +++  DHGDEPKS  +
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 TIQKADRSSLILKHQIKTSST 78
            QK DRS LILKHQIK++S+
Sbjct: 61 ISQKVDRSPLILKHQIKSTSS 81

BLAST of CcUC04G062470 vs. NCBI nr
Match: KAG6603410.1 (hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 62/84 (73.81%), Postives = 68/84 (80.95%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKP-------SSSSSSSEAINRAGVTFKTPLRGNKAEEDDHGDEP 60
          MAGLQYNFFPTDLLYPKP       SSSSSSS+AINRA VTFK P+RGN+ EEDDHGD  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSSSSSSSSDAINRASVTFKKPVRGNQDEEDDHGDGA 60

Query: 61 KSLTIQKADRSSLILKHQIKTSST 78
          KSL+IQK DRS LILKHQ+K  S+
Sbjct: 61 KSLSIQKGDRSPLILKHQVKNDSS 84

BLAST of CcUC04G062470 vs. NCBI nr
Match: ADN34001.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical protein E6C27_scaffold827G00560 [Cucumis melo var. makuwa] >TYK28218.1 hypothetical protein E5676_scaffold258G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 117.1 bits (292), Expect = 6.9e-23
Identity = 70/82 (85.37%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLRGNKAEED-DHGDEPKS-LTI 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKT LRGNK EED DHGDE KS L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-ADRSSLILKHQIK-TSSTF 79
          QK ADRS LILKHQ K TSSTF
Sbjct: 61 QKVADRSPLILKHQSKSTSSTF 82

BLAST of CcUC04G062470 vs. ExPASy TrEMBL
Match: A0A0A0KWJ2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLRGNKAEED--DHGDEPKS--L 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKTPLRGNK +++  DHGDEPKS  +
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTPLRGNKGDQEDIDHGDEPKSRLM 60

Query: 61 TIQKADRSSLILKHQIKTSST 78
            QK DRS LILKHQIK++S+
Sbjct: 61 ISQKVDRSPLILKHQIKSTSS 81

BLAST of CcUC04G062470 vs. ExPASy TrEMBL
Match: A0A5A7V9D3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00320 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 70/82 (85.37%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLRGNKAEED-DHGDEPKS-LTI 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKT LRGNK EED DHGDE KS L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-ADRSSLILKHQIK-TSSTF 79
          QK ADRS LILKHQ K TSSTF
Sbjct: 61 QKVADRSPLILKHQSKSTSSTF 82

BLAST of CcUC04G062470 vs. ExPASy TrEMBL
Match: E5GC02 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 3.3e-23
Identity = 70/82 (85.37%), Postives = 70/82 (85.37%), Query Frame = 0

Query: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRAGVTFKTPLRGNKAEED-DHGDEPKS-LTI 60
          MAGLQYNFFPTDLLYPKPSSSSSSSEAINRA VTFKT LRGNK EED DHGDE KS L  
Sbjct: 1  MAGLQYNFFPTDLLYPKPSSSSSSSEAINRASVTFKTTLRGNKGEEDIDHGDERKSRLFS 60

Query: 61 QK-ADRSSLILKHQIK-TSSTF 79
          QK ADRS LILKHQ K TSSTF
Sbjct: 61 QKVADRSPLILKHQSKSTSSTF 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53975.12.1e-2479.01hypothetical protein Csa_018873 [Cucumis sativus][more]
KAG6603410.11.8e-2373.81hypothetical protein SDJN03_04019, partial [Cucurbita argyrosperma subsp. sorori... [more]
ADN34001.16.9e-2385.37hypothetical protein [Cucumis melo subsp. melo] >KAA0063834.1 hypothetical prote... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWJ21.0e-2479.01Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G218340 PE=4 SV=1[more]
A0A5A7V9D33.3e-2385.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GC023.3e-2385.37Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 13..60
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..58
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..31
NoneNo IPR availablePANTHERPTHR38223:SF4SUBFAMILY NOT NAMEDcoord: 1..74
NoneNo IPR availablePANTHERPTHR38223FAMILY NOT NAMEDcoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062470.1CcUC04G062470.1mRNA