CcUC04G062460 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062460
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDNA/RNA polymerases superfamily protein
LocationCicolChr04: 15675695 .. 15677316 (-)
RNA-Seq ExpressionCcUC04G062460
SyntenyCcUC04G062460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGAACAAAATGGTGTTGCTGAATGTAAGCATCAGCACATCGTCGAAACAGCAATGTCCTTAATCAGTCATTCCTCTGTTCCCCTTGAATTTTGGCCCAATACTTTCTTTAGGGCTGTCTTTCTTCCTCAATCCTTACCTATTTCCACAACTTCCCCTTCCATTTTGACTACTACAATTTAAACCAGAGAATCTTTACCACATGTCTCTAAGTTTAATATGTAGGTATTTCCCACAGACGTTAAACCCACAATGGTTGTTTCCCCTCCATTATCGTCATCACTACCTTCAACCAATACTACTTTCCCCTCCATTATTAGCCCTATCCTTGTCTCCCAACCCTCCCCTCTGCCTCCAACCAATGTCCATACCCTGCAAACCTGATCCAAATCTGGAATCTTTAAGCCAATAAACTTGACCTTTCATGCCTACACCTCTACTTCAACTAACTATGTATCTTATACTGAGGCCTCCAAGTTTCCACACTGGCGTTCTACTATGGCCTCAGAGTTTAATGCGCTTCAAGAGGAAGGCACTTGGTCTCTAGTCCCCAGGTCACCTGATATAAATGTGGTTGGATGCAAGTGGGTGTTTCGCACCAAATATAATGTTGATGGATCTATTGATGAATACAAAGCTCATCTTGTAGCTAAAGGATGTTATCAGATTGAAGTTTCAACTTCTCAGAAATGTTTAGTCTGGTAATTAAAAAGCCTACCATTCGGGTATTCTTAATCTTGTTGCACAGTTCACATGACCCTTACATCAGATGGATGTAAGAAATGCCTTCTTAGATGGCCAATTATAGGAAACTGTTTACATGCCTCAGCTTGTTGGCTTTGTTCACAAAACTTGCCCACATCTTGTTTGTTTGCTCTACAAAAATCTACATGGACTTAAACAAGCACTACAACTTGGTATGATCAGTTTGTTTCATACTTACTTGTACTTGGTTTTACAATGTCTACATCTGATAATTCTTTGTTTGTCCATTCTGTCAGTGCTTCTCTAACGTCTTTTTTTGTCCATTCTGTCAGTTCTTCTCTAACGTATCTTTCGCTTTATATTGATAACATTGTTATTATTTGTTCAGATTTTGACAATGTGTGTCGTCTAAAGCTTTAATTGTCCAAAGAATTTCAGATTTCTGACCTTGGACGACTTTACTTCCTCGGGCTTGATATACAGACGAACCCTGAAGGTATTTTTATGAACCACGCTAAGTATCTTCATGATCTCCTTCAAACCTCTGGCATGTCAGCTGCTAAGTCTTGCCTTACACCCATGTCCACAACAATTGACCTTCATGCTTCGACTCCGTTATTTCCTAATGCTACTTTATATTGGAAGCTTGTGGGATCGTTATAGTATCTCACATTTACTCGCTTGATATTGTCTTTGCTGTCAATCATGTCAATCAGTTCATGCCGCACCCCACAATCAATCACTACACTACTGTAAAACAAATCTTTCGTTATCTCATTGGCATATTGAATCTTGGTTTTTAGTTCAAACCCGACAAGCTTTCTCTTCAGGCCTTATGTGACGTTGACTGCGCTAGCAATTCCTTTGATCGTCGGTCAACAATGGGTATGTTGTCCTCCTTGGCTCCTCACCTGTCT

mRNA sequence

CCTGAACAAAATGGTGTTGCTGAATGTAAGCATCAGCACATCGTCGAAACAGCAATGTCCTTAATCAGTCATTCCTCTGTTCCCCTTGAATTTTGGCCCAATACTTTCTTTAGGGCTGTCTTTCTTCCTCAATCCTTACCTATTTCCACAACTTCCCCTTCCATTTTGACTACTACAATTTAAACCAGAGAATCTTTACCACATGTCTCTAAGTTTAATATGTAGGTATTTCCCACAGACGTTAAACCCACAATGGTTGTTTCCCCTCCATTATCGTCATCACTACCTTCAACCAATACTACTTTCCCCTCCATTATTAGCCCTATCCTTGTCTCCCAACCCTCCCCTCTGCCTCCAACCAATGTCCATACCCTGCAAACCTGATCCAAATCTGGAATCTTTAAGCCAATAAACTTGACCTTTCATGCCTACACCTCTACTTCAACTAACTATGTATCTTATACTGAGGCCTCCAAGTTTCCACACTGGCGTTCTACTATGGCCTCAGAGTTTAATGCGCTTCAAGAGGAAGGCACTTGGTCTCTAGTCCCCAGGTCACCTGATATAAATGTGGTTGGATGCAAGTGGGTGTTTCGCACCAAATATAATGTTGATGGATCTATTGATGAATACAAAGCTCATCTTGTAGCTAAAGGATGTTATCAGATTGAAGTTTCAACTTCTCAGAAATGTTTAGTCTGGTAATTAAAAAGCCTACCATTCGGGTATTCTTAATCTTGTTGCACAGTTCACATGACCCTTACATCAGATGGATGTAAGAAATGCCTTCTTAGATGGCCAATTATAGGAAACTGTTTACATGCCTCAGCTTGTTGGCTTTGTTCACAAAACTTGCCCACATCTTGTTTGTTTGCTCTACAAAAATCTACATGGACTTAAACAAGCACTACAACTTGATTTCTGACCTTGGACGACTTTACTTCCTCGGGCTTGATATACAGACGAACCCTGAAGGTATTTTTATGAACCACGCTAAGTATCTTCATGATCTCCTTCAAACCTCTGGCATGTCAGCTGCTAAGTCTTGCCTTACACCCATGTCCACAACAATTGACCTTCATGCTTCGACTCCGTTATTTCCTAATGCTACTTTATATTGGAAGCTTGTGGGATCGTTATAGTATCTCACATTTACTCGCTTGATATTGTCTTTGCTGTCAATCATGTCAATCAGTTCATGCCGCACCCCACAATCAATCACTACACTACTGTAAAACAAATCTTTCGTTATCTCATTGGCATATTGAATCTTGGTTTTTAGTTCAAACCCGACAAGCTTTCTCTTCAGGCCTTATGTGACGTTGACTGCGCTAGCAATTCCTTTGATCGTCGGTCAACAATGGGTATGTTGTCCTCCTTGGCTCCTCACCTGTCT

Coding sequence (CDS)

ATGGCCAATTATAGGAAACTGTTTACATGCCTCAGCTTGTTGGCTTTGTTCACAAAACTTGCCCACATCTTGTTTGTTTGCTCTACAAAAATCTACATGGACTTAAACAAGCACTACAACTTGATTTCTGACCTTGGACGACTTTACTTCCTCGGGCTTGATATACAGACGAACCCTGAAGGTATTTTTATGAACCACGCTAAGTATCTTCATGATCTCCTTCAAACCTCTGGCATGTCAGCTGCTAAGTCTTGCCTTACACCCATGTCCACAACAATTGACCTTCATGCTTCGACTCCGTTATTTCCTAATGCTACTTTATATTGGAAGCTTGTGGGATCGTTATAG

Protein sequence

MANYRKLFTCLSLLALFTKLAHILFVCSTKIYMDLNKHYNLISDLGRLYFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTPLFPNATLYWKLVGSL
Homology
[Close]
BLAST of CcUC04G062460 vs. NCBI nr
Match: TYK06402.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISDLG L YFLGL+IQ++ +GIF+N AKYL+DLL TSGM++AKSC+TPMST++DL+   P
Sbjct: 474 ISDLGPLKYFLGLEIQSSIDGIFVNQAKYLNDLLHTSGMTSAKSCITPMSTSLDLYTIAP 533

Query: 102 LFPNATLYWKLVGSL 116
            F + +LY +LVGSL
Sbjct: 534 PFNDPSLYRRLVGSL 548

[Close]
BLAST of CcUC04G062460 vs. NCBI nr
Match: KAA0050146.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.4e-16
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISDLG L YFLGL+IQ++ +GIF+N AKYL+DLL TSGM++AKSC+TPMST++DL+   P
Sbjct: 532 ISDLGPLKYFLGLEIQSSIDGIFVNQAKYLNDLLHTSGMTSAKSCITPMSTSLDLYTIAP 591

Query: 102 LFPNATLYWKLVGSL 116
            F + +LY +LVGSL
Sbjct: 592 PFNDPSLYRRLVGSL 606

[Close]
BLAST of CcUC04G062460 vs. NCBI nr
Match: XP_022158189.1 (uncharacterized protein LOC111024722 [Momordica charantia])

HSP 1 Score: 94.4 bits (233), Expect = 7.0e-16
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISDLG L YFLGL+I++ P  IF+N A+YL DLL  SGM +AKSC TPMST+IDLHASTP
Sbjct: 671 ISDLGALRYFLGLEIKSLPTVIFVNQAEYLQDLLVRSGMCSAKSCSTPMSTSIDLHASTP 730

Query: 102 LFPNATLYWKLVGSL 116
           +F +A+LY +LV SL
Sbjct: 731 MFTDASLYRQLVVSL 745

[Close]
BLAST of CcUC04G062460 vs. NCBI nr
Match: TYJ96936.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-16
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           IS+LG L YFLGL+IQ++ +GIF+N AKYL+DLL TSGM++AKSC+TPMST++DL+   P
Sbjct: 258 ISNLGPLKYFLGLEIQSSIDGIFVNQAKYLNDLLHTSGMTSAKSCITPMSTSLDLYTIAP 317

Query: 102 LFPNATLYWKLVGSL 116
            F + +LY +LVGSL
Sbjct: 318 PFNDPSLYRRLVGSL 332

[Close]
BLAST of CcUC04G062460 vs. NCBI nr
Match: XP_022158642.1 (uncharacterized protein LOC111025097 [Momordica charantia])

HSP 1 Score: 94.0 bits (232), Expect = 9.2e-16
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISD G L YFLGL+I+  P GIF+N AKYL DLL  SGM  AKSC TPMST+IDLHAS P
Sbjct: 122 ISDFGALRYFLGLEIKFLPIGIFVNQAKYLQDLLVRSGMCLAKSCSTPMSTSIDLHASAP 181

Query: 102 LFPNATLYWKLVGSL 116
           +F +A+ Y +LVGSL
Sbjct: 182 MFTDASPYRQLVGSL 196

[Close]
BLAST of CcUC04G062460 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 6.2e-07
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           + DLG + YFLG+ I+T+P G+F++  KY   +L  +GM   K   TP+   ++   ST 
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA 92

Query: 102 LFPNATLYWKLVGSL 116
            +P+ + +  +VG+L
Sbjct: 93  KYPDPSDFRSIVGAL 107

[Close]
BLAST of CcUC04G062460 vs. ExPASy TrEMBL
Match: A0A5A7U7J4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001750 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISDLG L YFLGL+IQ++ +GIF+N AKYL+DLL TSGM++AKSC+TPMST++DL+   P
Sbjct: 532 ISDLGPLKYFLGLEIQSSIDGIFVNQAKYLNDLLHTSGMTSAKSCITPMSTSLDLYTIAP 591

Query: 102 LFPNATLYWKLVGSL 116
            F + +LY +LVGSL
Sbjct: 592 PFNDPSLYRRLVGSL 606

[Close]
BLAST of CcUC04G062460 vs. ExPASy TrEMBL
Match: A0A5D3C579 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001010 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.2e-16
Identity = 48/75 (64.00%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISDLG L YFLGL+IQ++ +GIF+N AKYL+DLL TSGM++AKSC+TPMST++DL+   P
Sbjct: 474 ISDLGPLKYFLGLEIQSSIDGIFVNQAKYLNDLLHTSGMTSAKSCITPMSTSLDLYTIAP 533

Query: 102 LFPNATLYWKLVGSL 116
            F + +LY +LVGSL
Sbjct: 534 PFNDPSLYRRLVGSL 548

[Close]
BLAST of CcUC04G062460 vs. ExPASy TrEMBL
Match: A0A6J1DYN6 (uncharacterized protein LOC111024722 OS=Momordica charantia OX=3673 GN=LOC111024722 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.4e-16
Identity = 50/75 (66.67%), Postives = 61/75 (81.33%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISDLG L YFLGL+I++ P  IF+N A+YL DLL  SGM +AKSC TPMST+IDLHASTP
Sbjct: 671 ISDLGALRYFLGLEIKSLPTVIFVNQAEYLQDLLVRSGMCSAKSCSTPMSTSIDLHASTP 730

Query: 102 LFPNATLYWKLVGSL 116
           +F +A+LY +LV SL
Sbjct: 731 MFTDASLYRQLVVSL 745

[Close]
BLAST of CcUC04G062460 vs. ExPASy TrEMBL
Match: A0A5D3BD76 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00410 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 47/75 (62.67%), Postives = 63/75 (84.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           IS+LG L YFLGL+IQ++ +GIF+N AKYL+DLL TSGM++AKSC+TPMST++DL+   P
Sbjct: 258 ISNLGPLKYFLGLEIQSSIDGIFVNQAKYLNDLLHTSGMTSAKSCITPMSTSLDLYTIAP 317

Query: 102 LFPNATLYWKLVGSL 116
            F + +LY +LVGSL
Sbjct: 318 PFNDPSLYRRLVGSL 332

[Close]
BLAST of CcUC04G062460 vs. ExPASy TrEMBL
Match: A0A6J1DXR3 (uncharacterized protein LOC111025097 OS=Momordica charantia OX=3673 GN=LOC111025097 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 4.4e-16
Identity = 50/75 (66.67%), Postives = 58/75 (77.33%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           ISD G L YFLGL+I+  P GIF+N AKYL DLL  SGM  AKSC TPMST+IDLHAS P
Sbjct: 122 ISDFGALRYFLGLEIKFLPIGIFVNQAKYLQDLLVRSGMCLAKSCSTPMSTSIDLHASAP 181

Query: 102 LFPNATLYWKLVGSL 116
           +F +A+ Y +LVGSL
Sbjct: 182 MFTDASPYRQLVGSL 196

[Close]
BLAST of CcUC04G062460 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 55.1 bits (131), Expect = 4.4e-08
Identity = 26/75 (34.67%), Postives = 45/75 (60.00%), Query Frame = 0 

Query: 42  ISDLGRL-YFLGLDIQTNPEGIFMNHAKYLHDLLQTSGMSAAKSCLTPMSTTIDLHASTP 101
           + DLG + YFLG+ I+T+P G+F++  KY   +L  +GM   K   TP+   ++   ST 
Sbjct: 33  MKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSVSTA 92

Query: 102 LFPNATLYWKLVGSL 116
            +P+ + +  +VG+L
Sbjct: 93  KYPDPSDFRSIVGAL 107

The following BLAST results are available for this feature:
BLAST of CcUC04G062460 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK06402.12.4e-1664.00putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0050146.12.4e-1664.00putative mitochondrial protein [Cucumis melo var. makuwa][more]
XP_022158189.17.0e-1666.67uncharacterized protein LOC111024722 [Momordica charantia][more]
TYJ96936.19.2e-1662.67putative mitochondrial protein [Cucumis melo var. makuwa][more]
XP_022158642.19.2e-1666.67uncharacterized protein LOC111025097 [Momordica charantia][more]
BLAST of CcUC04G062460 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P925196.2e-0734.67Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of CcUC04G062460 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U7J41.2e-1664.00Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3C5791.2e-1664.00Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1DYN63.4e-1666.67uncharacterized protein LOC111024722 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A5D3BD764.4e-1662.67Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A6J1DXR34.4e-1666.67uncharacterized protein LOC111025097 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
BLAST of CcUC04G062460 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00810.14.4e-0834.67DNA/RNA polymerases superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062460.1CcUC04G062460.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003676 nucleic acid binding