CcUC04G062440 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062440
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionDUF4283 domain-containing protein
LocationCicolChr04: 15662155 .. 15662880 (+)
RNA-Seq ExpressionCcUC04G062440
SyntenyCcUC04G062440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAGTCCACTAAGTATGGGCTTGTGAATTTCTGGACCCTCTTAGGTGGTTTGGGCTCGAGCAGTTCTAGCGGGGGTGGCCTGGGAGCTCATAACTCGATTGATTCACGCTCGTCTCCTGGTTTTGATGGTTTACGATCCGTTTCAGCAATTGAAATTCCTTCAAGGGGCCAGTCTAGAGTAGGCATTGAAGGTGTAGCTAATTTGAAGTCGTCTTGGGCTTCCCTATTCAGTTCCCCATCCTCCATGCAGTTGGACTTCACCCCTCCGATGGTGGAAGGGAACAAAGTGGTGGTGGTGCCCTCCGAGGAAGTGTTGGAGGTGGGGATTAGGATGTGGGAGAGATCTTTGGTGGGTCAGTTTGTTGATGCTAAATCGCCTTATTTGGTTATTCATCGTCTTACGGAATGCATTTGGGGGAAGGGGAGATGTCGAATATTACGTTGTTGGAGAATGGCTCATTATCTTCCAATTCTATCGTGCCGAGTCAAGAGATTTGGTCCTTGCGAATGGTCTGTTGCATCTTGGAGGTAAGCGCATCTTACTTTGTAAATGGTTCCCAAGGATTGTGCCTTAGTCCTTTGTTTTTTATTTTGTTCCTGTATGGATCAAGTTAGCTAGGATCCATATCGAGTTGTGGACAGATAGAGGTTTGGTTGTGATAGCTAGTGCAGTAAGGAAACCAATTGCCCATGATATGACAACTAAAGAAAGGCGTAGGTAG

mRNA sequence

ATGGGCAGTCCACTAACAATTGAAATTCCTTCAAGGGGCCAGTCTAGAGTAGGCATTGAAGGTGTAGCTAATTTGAAGTCGTCTTGGGCTTCCCTATTCAGTTCCCCATCCTCCATGCAGTTGGACTTCACCCCTCCGATGGTGGAAGGGAACAAAGTGGTGGTGGTGCCCTCCGAGGAAGTGTTGGAGGTGGGGATTAGGATGTGGGAGAGATCTTTGGTGGGTCAGTTTGTTGATGCTAAATCGCCTTATTTGTTAGCTAGGATCCATATCGAGTTGTGGACAGATAGAGGTTTGGTTGTGATAGCTAGTGCAGTAAGGAAACCAATTGCCCATGATATGACAACTAAAGAAAGGCGTAGGTAG

Coding sequence (CDS)

ATGGGCAGTCCACTAACAATTGAAATTCCTTCAAGGGGCCAGTCTAGAGTAGGCATTGAAGGTGTAGCTAATTTGAAGTCGTCTTGGGCTTCCCTATTCAGTTCCCCATCCTCCATGCAGTTGGACTTCACCCCTCCGATGGTGGAAGGGAACAAAGTGGTGGTGGTGCCCTCCGAGGAAGTGTTGGAGGTGGGGATTAGGATGTGGGAGAGATCTTTGGTGGGTCAGTTTGTTGATGCTAAATCGCCTTATTTGTTAGCTAGGATCCATATCGAGTTGTGGACAGATAGAGGTTTGGTTGTGATAGCTAGTGCAGTAAGGAAACCAATTGCCCATGATATGACAACTAAAGAAAGGCGTAGGTAG

Protein sequence

MGSPLTIEIPSRGQSRVGIEGVANLKSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPYLLARIHIELWTDRGLVVIASAVRKPIAHDMTTKERRR
Homology
[Close]
BLAST of CcUC04G062440 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.4 bits (220), Expect = 2.4e-14
Identity = 48/95 (50.53%), Postives = 60/95 (63.16%), Query Frame = 0 

Query: 27  SSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPYLL 86
           S+WASLF +     L +T P   G+ ++VVPSEEV+   IR+WE SLV           L
Sbjct: 143 STWASLFGTSPDGSLPYTQPKTIGDNIIVVPSEEVIAQNIRVWENSLV-----VPVWIRL 202

Query: 87  ARIHIELWTDRGLVVIASAVRKPIAHDMTTKERRR 122
            RI +ELWT+ GL V+ASAV KPI  D+ TKERRR
Sbjct: 203 GRIPMELWTEAGLAVVASAVGKPITLDLATKERRR 232

[Close]
BLAST of CcUC04G062440 vs. NCBI nr
Match: TYK23423.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 86.3 bits (212), Expect = 2.0e-13
Identity = 51/109 (46.79%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGI----------RMWERSLVG 85
           KS+WASLF + S   L +TPP   G+KVVVVP EEV+  GI          R W   +V 
Sbjct: 204 KSTWASLFGTSSEGSLPYTPPKAIGDKVVVVPPEEVIAQGIQHLGSKPMLLRKWTPGIVP 263

Query: 86  Q---FVDAKSPYLLARIHIELWTDRGLVVIASAVRKPIAHDMTTKERRR 122
           +   F        L RI +ELWT+ GL V+ASAV KPI  D+  KERRR
Sbjct: 264 ESFGFTSVPVWIKLGRIPMELWTEAGLAVVASAVGKPITLDLAIKERRR 312

[Close]
BLAST of CcUC04G062440 vs. NCBI nr
Match: XP_008460524.1 (PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo])

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-13
Identity = 54/172 (31.40%), Postives = 73/172 (42.44%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +T P   G+K+VV+P+EEV++ GIR+WE SLVGQ +DAK PY 
Sbjct: 231 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 290

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 291 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 350

[Close]
BLAST of CcUC04G062440 vs. NCBI nr
Match: TYK26656.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-13
Identity = 54/172 (31.40%), Postives = 73/172 (42.44%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +T P   G+K+VV+P+EEV++ GIR+WE SLVGQ +DAK PY 
Sbjct: 147 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 206

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 207 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPA 266

[Close]
BLAST of CcUC04G062440 vs. NCBI nr
Match: KAA0062320.1 (DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 5.9e-13
Identity = 54/172 (31.40%), Postives = 73/172 (42.44%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +T P   G+K+VV+P+EEV++ GIR+WE SLVGQ +DAK PY 
Sbjct: 350 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 409

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 410 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 469

[Close]
BLAST of CcUC04G062440 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 1.2e-14
Identity = 48/95 (50.53%), Postives = 60/95 (63.16%), Query Frame = 0 

Query: 27  SSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPYLL 86
           S+WASLF +     L +T P   G+ ++VVPSEEV+   IR+WE SLV           L
Sbjct: 143 STWASLFGTSPDGSLPYTQPKTIGDNIIVVPSEEVIAQNIRVWENSLV-----VPVWIRL 202

Query: 87  ARIHIELWTDRGLVVIASAVRKPIAHDMTTKERRR 122
            RI +ELWT+ GL V+ASAV KPI  D+ TKERRR
Sbjct: 203 GRIPMELWTEAGLAVVASAVGKPITLDLATKERRR 232

[Close]
BLAST of CcUC04G062440 vs. ExPASy TrEMBL
Match: A0A5D3DIK9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00040 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 9.8e-14
Identity = 51/109 (46.79%), Postives = 62/109 (56.88%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGI----------RMWERSLVG 85
           KS+WASLF + S   L +TPP   G+KVVVVP EEV+  GI          R W   +V 
Sbjct: 204 KSTWASLFGTSSEGSLPYTPPKAIGDKVVVVPPEEVIAQGIQHLGSKPMLLRKWTPGIVP 263

Query: 86  Q---FVDAKSPYLLARIHIELWTDRGLVVIASAVRKPIAHDMTTKERRR 122
           +   F        L RI +ELWT+ GL V+ASAV KPI  D+  KERRR
Sbjct: 264 ESFGFTSVPVWIKLGRIPMELWTEAGLAVVASAVGKPITLDLAIKERRR 312

[Close]
BLAST of CcUC04G062440 vs. ExPASy TrEMBL
Match: A0A5D3DSG9 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G003060 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 54/172 (31.40%), Postives = 73/172 (42.44%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +T P   G+K+VV+P+EEV++ GIR+WE SLVGQ +DAK PY 
Sbjct: 147 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 206

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 207 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPA 266

[Close]
BLAST of CcUC04G062440 vs. ExPASy TrEMBL
Match: A0A5A7V507 (DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G00710 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 54/172 (31.40%), Postives = 73/172 (42.44%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +T P   G+K+VV+P+EEV++ GIR+WE SLVGQ +DAK PY 
Sbjct: 350 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 409

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 410 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 469

[Close]
BLAST of CcUC04G062440 vs. ExPASy TrEMBL
Match: A0A1S3CC83 (uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.8e-13
Identity = 54/172 (31.40%), Postives = 73/172 (42.44%), Query Frame = 0 

Query: 26  KSSWASLFSSPSSMQLDFTPPMVEGNKVVVVPSEEVLEVGIRMWERSLVGQFVDAKSPY- 85
           KS+WASLF + +   L +T P   G+K+VV+P+EEV++ GIR+WE SLVGQ +DAK PY 
Sbjct: 231 KSTWASLFGTATEGSLPYTLPKAIGDKIVVIPTEEVIDQGIRVWENSLVGQLIDAKLPYS 290

Query: 86  ------------------------------------------------------------ 122
                                                                       
Sbjct: 291 VIQRLVEKICGKIEMPIITILENDLICFQFRRSKSVEWILSRGPWHLGGKPMLFRKWTPG 350

The following BLAST results are available for this feature:
BLAST of CcUC04G062440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0060724.12.4e-1450.53hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466... [more]
TYK23423.12.0e-1346.79DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
XP_008460524.15.9e-1331.40PREDICTED: uncharacterized protein LOC103499323 [Cucumis melo][more]
TYK26656.15.9e-1331.40DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
KAA0062320.15.9e-1331.40DUF4283 domain-containing protein [Cucumis melo var. makuwa][more]
BLAST of CcUC04G062440 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G062440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V0841.2e-1450.53Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc... [more]
A0A5D3DIK99.8e-1446.79DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3DSG92.8e-1331.40DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7V5072.8e-1331.40DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A1S3CC832.8e-1331.40uncharacterized protein LOC103499323 OS=Cucumis melo OX=3656 GN=LOC103499323 PE=... [more]
BLAST of CcUC04G062440 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062440.1CcUC04G062440.1mRNA