CcUC04G062270 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G062270
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	F-box domain-containing protein
Location	CicolChr04: 15043653 .. 15044018 (+)
RNA-Seq Expression	CcUC04G062270
Synteny	CcUC04G062270

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCATGAATCTCTTTCTTCTTGGCTGCCAATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCTATTTTAGCTGCTAATTTCCCTTCTCTTTCTAATGTTATCGTCTCCTCTACCAACACATCACCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGCCGCCGTCCCTCGTCGTCGTCGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

mRNA sequence

ATGGCGCATGAATCTCTTTCTTCTTGGCTGCCAATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCTATTTTAGCTGCTAATTTCCCTTCTCTTTCTAATGTTATCGTCTCCTCTACCAACACATCACCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGCCGCCGTCCCTCGTCGTCGTCGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

Coding sequence (CDS)

ATGGCGCATGAATCTCTTTCTTCTTGGCTGCCAATGCCATGGGAGGTGCTGCTTCTCGTTGGCGAATTTCTCGACCCCAAAACCCTAGCCATGGCCTCTTGTGTGTGCAAGTCTTGGTCCATTGCCATGGCCTCTAATCACCTTTGGGAGCCTATTTTAGCTGCTAATTTCCCTTCTCTTTCTAATGTTATCGTCTCCTCTACCAACACATCACCACCTATCTCCTTTCGTCGCCTCTTCAACCTTGGCCACATCGCTACCACCCGCCGCCGTCCCTCGTCGTCGTCGTGGTTGTTTCGCTCCCTCGAAACCCACCCTTTTCCTCTTCGACCTTGTCTTCGTCGTCGACATGATCTCCTCCCTTGA

Protein sequence

MAHESLSSWLPMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNTSPPISFRRLFNLGHIATTRRRPSSSSWLFRSLETHPFPLRPCLRRRHDLLP

Homology

[Close]

BLAST of CcUC04G062270 vs. NCBI nr
Match: KAE8649458.1 (hypothetical protein Csa_018875 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 4.2e-35
Identity = 85/121 (70.25%), Postives = 90/121 (74.38%), Query Frame = 0


Query: 1   MAHESLSSWLPMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSL 60
           MA+ESLS W   PWEVLLLVG FLDPKTLAMASCVCKSW IA+AS+HLWEPILA NFPSL
Sbjct: 1   MANESLSFW--PPWEVLLLVGGFLDPKTLAMASCVCKSWFIALASDHLWEPILAHNFPSL 60

Query: 61  SNVIVSSTNTSPPISFRRLFNLGHIATTRRRPSSSSWLFRSLETHPFPLRPCLRRRHDLL 120
            N  VSST TSP  SF RLF LGH + T   P       RSLET PF LR CLR R+DLL
Sbjct: 61  LNRTVSSTTTSPSTSFCRLFGLGHNSATHCYPPLFMASSRSLETQPFLLRHCLRHRYDLL 119

Query: 121 P 122
           P
Sbjct: 121 P 119

[Close]

BLAST of CcUC04G062270 vs. NCBI nr
Match: XP_038883618.1 (probable F-box protein At5g04010 [Benincasa hispida])

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-27
Identity = 68/92 (73.91%), Postives = 75/92 (81.52%), Query Frame = 0


Query: 5  SLSSWLPMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVI 64
          SLSS  P PWEVLLLV E LDPKTLA ASCVCK WSI+MAS+HLWEPI  ANFPSLSN+ 
Sbjct: 7  SLSS--PPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLA 66

Query: 65 VSST-NTSPPISFRRLFNLGHIATTRRRPSSS 96
          +SS+  TSPP+SFRRLF LGH A  RRRP+ S
Sbjct: 67 ISSSAPTSPPVSFRRLFGLGHTAAARRRPAPS 96

[Close]

BLAST of CcUC04G062270 vs. NCBI nr
Match: XP_023518459.1 (probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 11 PMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNT 70
          P PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  T
Sbjct: 11 PPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATT 70

Query: 71 SPPISFRRLFNLGHIATTRRRPSSS 96
          SPP+SFRRLF LGH A  RRRP+ S
Sbjct: 71 SPPVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of CcUC04G062270 vs. NCBI nr
Match: XP_022925168.1 (probable F-box protein At5g04010 [Cucurbita moschata])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 11 PMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNT 70
          P PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  T
Sbjct: 11 PPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATT 70

Query: 71 SPPISFRRLFNLGHIATTRRRPSSS 96
          SPP+SFRRLF LGH A  RRRP+ S
Sbjct: 71 SPPVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of CcUC04G062270 vs. NCBI nr
Match: KAG7027654.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132.5 bits (332), Expect = 2.5e-27
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 11 PMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNT 70
          P PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  T
Sbjct: 11 PPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATT 70

Query: 71 SPPISFRRLFNLGHIATTRRRPSSS 96
          SPP+SFRRLF LGH A  RRRP+ S
Sbjct: 71 SPPVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of CcUC04G062270 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.6e-08
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 11  PMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNT 70
           P  WE+L LVG ++DP++LA+ASCV  +WS   +S  LW+ + A      +  I      
Sbjct: 52  PPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGAK 111

Query: 71  SPPISFRRLFNLGHIATTRRR 92
              +S++RL +    A  RRR
Sbjct: 112 PAWLSYKRLISEAESAAKRRR 132

[Close]

BLAST of CcUC04G062270 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.2e-27
Identity = 62/85 (72.94%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 11 PMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNT 70
          P PWEVLLLV E LDP+TLA ASCVCKSWSI+MASN+LWEPI +A FPSL+N+  SS  T
Sbjct: 11 PPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATT 70

Query: 71 SPPISFRRLFNLGHIATTRRRPSSS 96
          SPP+SFRRLF LGH A  RRRP+ S
Sbjct: 71 SPPVSFRRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of CcUC04G062270 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 7.7e-27
Identity = 61/85 (71.76%), Postives = 68/85 (80.00%), Query Frame = 0


Query: 11 PMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNT 70
          P PWEVLLLV E LDP+TLA ASCVCKSWSI+MASNHLWEPI +A FPSL+N+  SS   
Sbjct: 11 PPPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSLTNLAASSATA 70

Query: 71 SPPISFRRLFNLGHIATTRRRPSSS 96
          SPP+SF RLF LGH A  RRRP+ S
Sbjct: 71 SPPLSFCRLFGLGHTAAARRRPAPS 95

[Close]

BLAST of CcUC04G062270 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 5  SLSSWLPMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVI 64
          SLSS  P PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N +
Sbjct: 7  SLSS-SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-L 66

Query: 65 VSSTNTSPPISFRRLFNLGHIATTRRRPS 94
           S+  +SPP+SFRRLF LG+IA  RRRP+
Sbjct: 67 ASAPTSSPPVSFRRLFGLGYIAAARRRPA 93

[Close]

BLAST of CcUC04G062270 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 63/89 (70.79%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 5  SLSSWLPMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVI 64
          SLSS  P PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N +
Sbjct: 7  SLSS-SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-L 66

Query: 65 VSSTNTSPPISFRRLFNLGHIATTRRRPS 94
           S+  +SPP+SFRRLF LG+IA  RRRP+
Sbjct: 67 ASAPTSSPPVSFRRLFGLGYIAAARRRPA 93

[Close]

BLAST of CcUC04G062270 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 5.5e-25
Identity = 63/91 (69.23%), Postives = 73/91 (80.22%), Query Frame = 0


Query: 5  SLSSWLPMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVI 64
          SLSS  P PWEV+LLV E LDPKTLA ASCVCKSWS++MAS+HLWEPI  ANFPSL N +
Sbjct: 7  SLSS-SPPPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFN-L 66

Query: 65 VSSTNTSPPISFRRLFNLGHIATTRRRPSSS 96
           ++  TSP +SFRRLF LG+IA  RRRP+ S
Sbjct: 67 ATAPATSPHVSFRRLFGLGYIAAARRRPAQS 95

[Close]

BLAST of CcUC04G062270 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-09
Identity = 29/81 (35.80%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 11  PMPWEVLLLVGEFLDPKTLAMASCVCKSWSIAMASNHLWEPILAANFPSLSNVIVSSTNT 70
           P  WE+L LVG ++DP++LA+ASCV  +WS   +S  LW+ + A      +  I      
Sbjct: 52  PPSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRHSIFAKAITKEGAK 111

Query: 71  SPPISFRRLFNLGHIATTRRR 92
              +S++RL +    A  RRR
Sbjct: 112 PAWLSYKRLISEAESAAKRRR 132

The following BLAST results are available for this feature:

BLAST of CcUC04G062270 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649458.1	4.2e-35	70.25	hypothetical protein Csa_018875 [Cucumis sativus]	[more]
XP_038883618.1	1.9e-27	73.91	probable F-box protein At5g04010 [Benincasa hispida]	[more]
XP_023518459.1	2.5e-27	72.94	probable F-box protein At5g04010 [Cucurbita pepo subsp. pepo]	[more]
XP_022925168.1	2.5e-27	72.94	probable F-box protein At5g04010 [Cucurbita moschata]	[more]
KAG7027654.1	2.5e-27	72.94	putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CcUC04G062270 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	2.6e-08	35.80	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]

BLAST of CcUC04G062270 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EEG3	1.2e-27	72.94	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A6J1HMX9	7.7e-27	71.76	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]
A0A5D3DEJ6	1.1e-25	70.79	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	1.1e-25	70.79	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A0A0LDE5	5.5e-25	69.23	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]

BLAST of CcUC04G062270 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	1.9e-09	35.80	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 12..52 e-value: 6.3E-4 score: 29.1
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 8..51 e-value: 1.4E-5 score: 24.8
None	No IPR available	GENE3D	1.20.1280.50		coord: 2..104 e-value: 7.3E-9 score: 37.4
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 10..93
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 10..93
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 5..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G062270.1	CcUC04G062270.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009740	gibberellic acid mediated signaling pathway
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding