CcUC04G062230 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062230
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 14873750 .. 14876703 (-)
RNA-Seq ExpressionCcUC04G062230
SyntenyCcUC04G062230
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAATTATGGTAAGGAATAAAATAGTTTTTTTTTTTTTTCCTCTAACATTTGAAAAGTTGAAAAATAGAAGAAGTCAGACATCTAATAGTTGGCATGTCGAATTGTATACATAATGAGTTGGTTTAGATCAATCCTAACCGGATGATTATGAATTACTTCTATATTCGATATTAATATATATTCGATATTAATAATTAATAGGATTAATAGTAATAGAAAATATGATATTAACCCCCAGTAAAAAGAGAAAATCTCAAATTTCGGATTTTTGCGTGAAATCCCTGCTATTTTTTATTGAACCGCTACAAGATCAACAATTCCATGAGCTTGGGCTTCTGTTGCTGACATAAAAACATCCCTTTCTAGGTCTTCGGATACAACCCATAAGGGTTTGCCTGTTCTTTGTACATAAACCCTTGTGATGGTTTCGCGCAGCTTCAGTAGTTCTTCCGCTTCTAGGACAAATTCTCCCGCTTGTGCCTCATAAAAAGCACTAGCAGGTTGATGGATCATTACCCTGATGATTTAATAAATGGTTTTCTCTATCTCACATCATGTGTATTCTAGTAGCTTCGAACTTTATTGAATCAACTGTCTTGAATGCAAAGCCCCTTTTTCAAAAGAACTAGAAATGGGTATTAAACAAAGGACATAGTGGGATAGGTAAAACCTCTTTTTTCGAGTGAAAGGCCTTATGTTATGAGGGTAAACCTCCTAACCAAGGGCAACTCAGTGCCAAACTCTCCTCTATAATAAGGGTGGGGTATCCGAATCGACCTCCAACACTTATTCCGGATATCGTGATCTTGGATCTAGGTCCAGGTACTTTTTCTGATTCTGATTCTCTTGGGTACAATACCGAAGCTAAGTATAAGTAGATGAAAACAGCTTGACCAAGAGTTGCATCAGCTGATTATTCCGCTAAGTCAGTAAAGCCGGAAAAGCCTTGCTCTAAAGGAGCTTGGGGTGATACCTTTCTATTAAGGAGAGTTTTGTTTGGCAGATCGACTTATAGTTGCTTCGGATGTAGCATTTTTGGGGGATCTGAAAGAGAAGCGGTAAGACTACTCTCCTCTTTTAGTCTTTCCTGCCTTGAAGAACCTTCTTTTTCGGATAGGAAGGGAATGAGGGCCGAACGAAGAAAGCATCCGTCTTCTTTTCCTTTTCTTTGTTTTGGTAATCACAGGAGTCGCTCCACGGCTTGGAAAGCGTGAGCAAGTTCTCTTCTCTCACTCTCGGTACAAACTTGGGACACCAAACAACCATAGCTACTCTATCCCGCTGACACGAAGGAAGTGGAAAGACACTAAGGGAGAGGGATATACTCCTTTTTAGAATCGCCGAAATTGTACGAATGTTCCAGGCGTATGACCCTGATACGTTAAGGTTTCTTTCTTCCGGACCGGTTTCTAAAGTGATAGTAGTCTTAATAAATAAGAAAGAGAAGAGCTAAGATTCAGGAAAGGAAGCTTTATGGTAAAAAGGAATAAAAGTATGTATGTATCTGGGGGTGGGGGTGAAAGGAATTTTCAAAATTTTGTTAGGTCTCAATGAGGGGAGACCGGGTCATGTGACGGATGCAAGCTAGACTTTGAAGCACAAAATCCAAGATTTCATAAAAGAAGGAAAAATCAACGTAGCGGATGAAGAGGAAGCCTTTATTTACCCCAACGAGAAAATGGGAGTTTTTTTTAAGAGCTTGCTCCCTAGTCACGCTCCGGTCTCAACATGCTGGGCCGAGGAAGTGTCCAATTTCCAACATCCCCTACCATCACTACAATTAATGCTATTAAGACTTTCTGGCTTTGTGAGGAAGATCCCTCCCACTGGATCATCATGACTCCTACGTTCCGACTTCCAAAGGCGATCCTAAGGGAAGAAGAATGAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGGAAGCTCCACCAAAAGAAGAAGAGGAAATAAGACTCGAGTTTCTGGAAATCTTTCAAGAGGGAGTTCCATAGCGAAAACGGAGAGAGGAAAATTCAGAAAAAGAGAAAAAAAAAAAGAAGAAGATTGAATGGATTTTCCCGAACCTGTCTGCGCTGCCGTCGCTGGAACCATTTATGATGTCCGCGTCTAGGTGGATTGTGGTGCTACCATTCCTTTAGGATACCTTTCGGCTTCAGTCAAAACTCTTCCCCCTTCGTTTTTATAGATATTCAGGTTTGTACGGTAACTCCACTTTGAGTATGGAATTCACTTTGTTGGTTGAGTGGAGTTACAGTAGACAAATCTATAAAGGAAGGACAATCGATCGCACTTGGCGCAGAACCACTTAACGGTGGTTCTTTACTCCCTCAAGACTTGCTTCTGATTTTTTCTTTCATCCTTCATCCATCCCTTTTTGTATCAATAGGGAGCTATGAGCAAGGCAGCTCTGCTTCAGAAAGACAAGAAACCAGCAGGTCCTTTTCCGCTTGATCACTCACTCATGAGCAAAGCCGCCTTTTGCCGCCCCTCATGCAGCATATGAGCGGATCTTCACTAAAAGCCGGCTCTATTGGCGGATGGATAAGGCCCCTCACTCTGACATGAGAACAAAGAAAGCCGCACGAGATCCTTGTAGCTTTGCCTGCCGCCCTTCGGTGGTATAGTAGTCTCGATAGCAAAGCCGCCTTCGGCCCTTCGCTTAGTAAGCCCCTCTTCGAGCGTTGACAAAGGAGAACAGCCCCCCCTGTTGTTGATAGATAGAGAGCTTACCGCCCCGCCCTTTATAGTCGCGACTGTTGTCATGGAAAAAGAGTTTGTTTTCTGTCAAAGAAGCATGCTTAACACAGCCTATAGCGTAAAGGCATTCGATCCGCGTCTAAACTAAATTAAGGGTAAAGGCCCGTACTCTCTCTTCTGTACATACGCTATCCCTTCCAGCTATGGTATGGGGGAAGGGAAGTGAGATCTACAGATTTGTTTGATATTTGA

mRNA sequence

ATGAACAATTATGCTTGGGCTTCTGTTGCTGACATAAAAACATCCCTTTCTAGGTCTTCGGATACAACCCATAAGGGAGTCGCTCCACGGCTTGGAAAGCGTGAGCAAGTTCTCTTCTCTCACTCTCGAATCGCCGAAATTGTACGAATGTTCCAGGCGTATGACCCTGATACGTTAAGGAATAAAAGTATGTATGTATCTGGGGGTGGGGGTGAAAGGAATTTTCAAAATTTTGTTAGGATACCTTTCGGCTTCAGTCAAAACTCTTCCCCCTTCGTTTTTATAGATATTCAGGGAGCTATGAGCAAGGCAGCTCTGCTTCAGAAAGACAAGAAACCAGCAGTAGTCTCGATAGCAAAGCCGCCTTCGGCCCTTCGCTTAGTAAGCCCCTCTTCGAGCGTTGACAAAGGAGAACAGCCCCCCCTGTTGTTGATAGATAGAGAGCTTACCGCCCCGCCCTTTATAGTCGCGACTGTTGTCATGGAAAAAGAGTTTGTTTTCTGTCAAAGAAGCATGCTTAACACAGCCTATAGCCTATGGTATGGGGGAAGGGAAGTGAGATCTACAGATTTGTTTGATATTTGA

Coding sequence (CDS)

ATGAACAATTATGCTTGGGCTTCTGTTGCTGACATAAAAACATCCCTTTCTAGGTCTTCGGATACAACCCATAAGGGAGTCGCTCCACGGCTTGGAAAGCGTGAGCAAGTTCTCTTCTCTCACTCTCGAATCGCCGAAATTGTACGAATGTTCCAGGCGTATGACCCTGATACGTTAAGGAATAAAAGTATGTATGTATCTGGGGGTGGGGGTGAAAGGAATTTTCAAAATTTTGTTAGGATACCTTTCGGCTTCAGTCAAAACTCTTCCCCCTTCGTTTTTATAGATATTCAGGGAGCTATGAGCAAGGCAGCTCTGCTTCAGAAAGACAAGAAACCAGCAGTAGTCTCGATAGCAAAGCCGCCTTCGGCCCTTCGCTTAGTAAGCCCCTCTTCGAGCGTTGACAAAGGAGAACAGCCCCCCCTGTTGTTGATAGATAGAGAGCTTACCGCCCCGCCCTTTATAGTCGCGACTGTTGTCATGGAAAAAGAGTTTGTTTTCTGTCAAAGAAGCATGCTTAACACAGCCTATAGCCTATGGTATGGGGGAAGGGAAGTGAGATCTACAGATTTGTTTGATATTTGA

Protein sequence

MNNYAWASVADIKTSLSRSSDTTHKGVAPRLGKREQVLFSHSRIAEIVRMFQAYDPDTLRNKSMYVSGGGGERNFQNFVRIPFGFSQNSSPFVFIDIQGAMSKAALLQKDKKPAVVSIAKPPSALRLVSPSSSVDKGEQPPLLLIDRELTAPPFIVATVVMEKEFVFCQRSMLNTAYSLWYGGREVRSTDLFDI
Homology
[Close]
BLAST of CcUC04G062230 vs. NCBI nr
Match: GFS28490.1 (hypothetical protein Acr_00g0002080 [Actinidia rufa])

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-11
Identity = 55/105 (52.38%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 99  GAMSKAALLQKDKKPAVVSIAKPPSALRLVSP-------SSSVDKGEQPPLL-------- 158
           GA SKAALL+K+KKPA +     P+ALR  S          S+ K    PLL        
Sbjct: 335 GATSKAALLRKEKKPAAL-----PAALRWYSRMDSKAAFGPSLSKPLFEPLLNSARPVRS 394

Query: 159 ----------LIDRELTAPPFIVATVVMEKEFVFCQRSMLNTAYS 179
                     ++ RELTAPPFIVATVVMEKEFVFCQRSMLNTAYS
Sbjct: 395 LVALTKVWNPVLARELTAPPFIVATVVMEKEFVFCQRSMLNTAYS 434

[Close]
BLAST of CcUC04G062230 vs. ExPASy TrEMBL
Match: A0A7J0D6V2 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0002080 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 55/105 (52.38%), Postives = 62/105 (59.05%), Query Frame = 0 

Query: 99  GAMSKAALLQKDKKPAVVSIAKPPSALRLVSP-------SSSVDKGEQPPLL-------- 158
           GA SKAALL+K+KKPA +     P+ALR  S          S+ K    PLL        
Sbjct: 335 GATSKAALLRKEKKPAAL-----PAALRWYSRMDSKAAFGPSLSKPLFEPLLNSARPVRS 394

Query: 159 ----------LIDRELTAPPFIVATVVMEKEFVFCQRSMLNTAYS 179
                     ++ RELTAPPFIVATVVMEKEFVFCQRSMLNTAYS
Sbjct: 395 LVALTKVWNPVLARELTAPPFIVATVVMEKEFVFCQRSMLNTAYS 434

The following BLAST results are available for this feature:
BLAST of CcUC04G062230 vs. NCBI nr
Match NameE-valueIdentityDescription
GFS28490.13.0e-1152.38hypothetical protein Acr_00g0002080 [Actinidia rufa][more]
BLAST of CcUC04G062230 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G062230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A7J0D6V21.5e-1152.38Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_00g0002080 PE=4 SV=1[more]
BLAST of CcUC04G062230 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062230.1CcUC04G062230.1mRNA