CcUC04G062210 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062210
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionCytochrome c-type biogenesis protein CcmF, mitochondrion
LocationCicolChr04: 14871197 .. 14871700 (-)
RNA-Seq ExpressionCcUC04G062210
SyntenyCcUC04G062210
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGAATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTGCTGACCACACTGAGAGACACAAAAGCGCAGGTAACGCCAGTTGGCGAAGTGGCGTTAAGCATCCCTAGCGGTACGAAAAGAGAGGTCGTGATGATATCATCTACGTCCGTACCGCTCCTCGTGGAGTAGATCCCGCATCCAACCAAGTCTTTGACCAGGGAACGGGAGAATTCCCACTACCGCTAGCAGGCCAGCCGTGCCGTGAGCGCGGTGGGAACTGGCTTCCCAAAAAGCCAGCCTGGGGCCGGAGTCAGCATAGAATGAAGGGGACGACCAGTTGTGTTGGCAAAGCCAACTTCTTGGGTTTCGGGCGGAGAAGAGTGGACATGGGGACTCGAGTCAGGGCGCAGCGTAACTAAGAGAGCCATTCCATTTAGGGCGAGCCCGTGTGGTTATGGGGGCGGGCACGAGCGGTCTGGTGTCCAAGCCAATTGGTCAGACGATGATGACTTCACTTATTAG

mRNA sequence

ATGCGAATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTGCTGACCACACTGAGAGACACAAAAGCGCAGGGAACGGGAGAATTCCCACTACCGCTAGCAGGCCAGCCGTGCCGTGAGCGCGGTGGGAACTGGCTTCCCAAAAAGCCAGCCTGGGGCCGGAGGCGCAGCGTAACTAAGAGAGCCATTCCATTTAGGGCGAGCCCGTGTGGTTATGGGGGCGGGCACGAGCGGTCTGGTGTCCAAGCCAATTGGTCAGACGATGATGACTTCACTTATTAG

Coding sequence (CDS)

ATGCGAATGGGTGTAAGCCTCGCTGCTCGGAAACACCCAGTGCTGACCACACTGAGAGACACAAAAGCGCAGGGAACGGGAGAATTCCCACTACCGCTAGCAGGCCAGCCGTGCCGTGAGCGCGGTGGGAACTGGCTTCCCAAAAAGCCAGCCTGGGGCCGGAGGCGCAGCGTAACTAAGAGAGCCATTCCATTTAGGGCGAGCCCGTGTGGTTATGGGGGCGGGCACGAGCGGTCTGGTGTCCAAGCCAATTGGTCAGACGATGATGACTTCACTTATTAG

Protein sequence

MRMGVSLAARKHPVLTTLRDTKAQGTGEFPLPLAGQPCRERGGNWLPKKPAWGRRRSVTKRAIPFRASPCGYGGGHERSGVQANWSDDDDFTY
Homology
BLAST of CcUC04G062210 vs. NCBI nr
Match: CAN83576.1 (hypothetical protein VITISV_021757 [Vitis vinifera])

HSP 1 Score: 94.4 bits (233), Expect = 5.7e-16
Identity = 63/120 (52.50%), Postives = 63/120 (52.50%), Query Frame = 0

Query: 1   MRMGVSLAARKHPVLTTLRDTKA--------------------------------QGTGE 60
           MRMGVSL ARKHPVLTTLRDTKA                                QGTGE
Sbjct: 1   MRMGVSLDARKHPVLTTLRDTKAQVTPVGERGRDHIINVRTAPRGVDPASNQVFDQGTGE 60

Query: 61  FPLPLAGQPCRERGGNWLPKKPA---------------W--GRRRSVTKRAIPFRASPCG 72
           FPLPLAGQP RERGGN LPKKPA               W  G  RSVTKRAIPFRA   G
Sbjct: 61  FPLPLAGQPGRERGGNGLPKKPARAGPTSWVAGGEEQTWGLGSGRSVTKRAIPFRARQNG 120

BLAST of CcUC04G062210 vs. NCBI nr
Match: PKI33354.1 (hypothetical protein CRG98_046251 [Punica granatum])

HSP 1 Score: 82.4 bits (202), Expect = 2.2e-12
Identity = 47/75 (62.67%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 3  MGVSLAARKHPVLTTLRDTKA--------------------------QGTGEFPLPLAGQ 52
          MGVSLAARKHPVLTTLRDTKA                          QGTGEFPLPLAGQ
Sbjct: 1  MGVSLAARKHPVLTTLRDTKAQRGRDDIIYVRTAPRGVNPASNQVFDQGTGEFPLPLAGQ 60

BLAST of CcUC04G062210 vs. NCBI nr
Match: OIT40703.1 (hypothetical protein A4A49_63613 [Nicotiana attenuata])

HSP 1 Score: 80.9 bits (198), Expect = 6.5e-12
Identity = 47/79 (59.49%), Postives = 47/79 (59.49%), Query Frame = 0

Query: 3  MGVSLAARKHPVLTTLRDTKA------------------------------QGTGEFPLP 52
          MGVSLAARKHPVLTTLRDTKA                              QGTGEFPLP
Sbjct: 1  MGVSLAARKHPVLTTLRDTKAQRYEKRGRDDIIYVRTAPRGVDPASNQVFDQGTGEFPLP 60

BLAST of CcUC04G062210 vs. NCBI nr
Match: KAG6736883.1 (hypothetical protein POTOM_060194 [Populus tomentosa])

HSP 1 Score: 79.7 bits (195), Expect = 1.4e-11
Identity = 47/69 (68.12%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 1   MRMGVSLAARKHPVLTTLRDTKAQGT--GEFPLPL-AGQPCRERGGNWLPKKPAWGRRRS 60
           MRMGVS AARKHPVLTTLRDTKAQ T  GE  L + +GQP RERGGN LPKKPA GR   
Sbjct: 433 MRMGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGQPGRERGGNGLPKKPAPGRACF 492

Query: 61  VTKRAIPFR 67
            T +  P R
Sbjct: 493 FTSKLRPDR 501

BLAST of CcUC04G062210 vs. NCBI nr
Match: PWA81401.1 (cytochrome c-type biogenesis protein CcmF, mitochondrion [Artemisia annua])

HSP 1 Score: 78.6 bits (192), Expect = 3.2e-11
Identity = 56/103 (54.37%), Postives = 61/103 (59.22%), Query Frame = 0

Query: 3  MGVSLAARKHPVLTTLRDTKAQGT--GEFPLPL-AGQPCRERGGNWLPKKPA-------- 62
          MGVSLAARKHPVLTTLRDTKAQ T  GE  L + +GQP RE GG+ LPKKPA        
Sbjct: 1  MGVSLAARKHPVLTTLRDTKAQVTPVGEVALSIPSGQPGREHGGDGLPKKPARAGPTSWV 60

Query: 63 -------W--GRRRSVTKRAIPFRASPCGYGGGHERSGVQANW 86
                 W  G  RSVTK     R       GGH RSGV+A+W
Sbjct: 61 SGGEKRTWGLGSGRSVTKGFHLGRDKM----GGHGRSGVRADW 99

BLAST of CcUC04G062210 vs. ExPASy TrEMBL
Match: A0A6N2MN25 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS388815 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.2e-17
Identity = 58/95 (61.05%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 3  MGVSLAARKHPVLTTLRDTKAQ------------------GTGEFPLPLAGQPCRERGGN 62
          MGVS AARKHPVLTTLRDTKAQ                  GTG+FPLPLAGQP RERGGN
Sbjct: 1  MGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGTKREGTGKFPLPLAGQPGRERGGN 60

Query: 63 WLPKKPAWGRR--------RSVTKRAIPFRASPCG 72
           LPKKPA GR         RS+TKRAIPF A   G
Sbjct: 61 GLPKKPAPGRERTWGLGSGRSLTKRAIPFWARQNG 95

BLAST of CcUC04G062210 vs. ExPASy TrEMBL
Match: A5BTL1 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021757 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.8e-16
Identity = 63/120 (52.50%), Postives = 63/120 (52.50%), Query Frame = 0

Query: 1   MRMGVSLAARKHPVLTTLRDTKA--------------------------------QGTGE 60
           MRMGVSL ARKHPVLTTLRDTKA                                QGTGE
Sbjct: 1   MRMGVSLDARKHPVLTTLRDTKAQVTPVGERGRDHIINVRTAPRGVDPASNQVFDQGTGE 60

Query: 61  FPLPLAGQPCRERGGNWLPKKPA---------------W--GRRRSVTKRAIPFRASPCG 72
           FPLPLAGQP RERGGN LPKKPA               W  G  RSVTKRAIPFRA   G
Sbjct: 61  FPLPLAGQPGRERGGNGLPKKPARAGPTSWVAGGEEQTWGLGSGRSVTKRAIPFRARQNG 120

BLAST of CcUC04G062210 vs. ExPASy TrEMBL
Match: A0A6N2KT43 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS135830 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 47/70 (67.14%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 3  MGVSLAARKHPVLTTLRDTKAQ------------------GTGEFPLPLAGQPCRERGGN 55
          MGVS AARKHPVLTTLRDTKAQ                  GTG+FPLPLAGQP RERGGN
Sbjct: 1  MGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGTKREGTGKFPLPLAGQPGRERGGN 60

BLAST of CcUC04G062210 vs. ExPASy TrEMBL
Match: A0A6N2KH66 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS25461 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.2e-13
Identity = 47/70 (67.14%), Postives = 48/70 (68.57%), Query Frame = 0

Query: 3  MGVSLAARKHPVLTTLRDTKAQ------------------GTGEFPLPLAGQPCRERGGN 55
          MGVS AARKHPVLTTLRDTKAQ                  GTG+FPLPLAGQP RERGGN
Sbjct: 1  MGVSFAARKHPVLTTLRDTKAQVTPVGEVALSIPSGTKREGTGKFPLPLAGQPGRERGGN 60

BLAST of CcUC04G062210 vs. ExPASy TrEMBL
Match: A0A2I0HNP4 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_046251 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 47/75 (62.67%), Postives = 47/75 (62.67%), Query Frame = 0

Query: 3  MGVSLAARKHPVLTTLRDTKA--------------------------QGTGEFPLPLAGQ 52
          MGVSLAARKHPVLTTLRDTKA                          QGTGEFPLPLAGQ
Sbjct: 1  MGVSLAARKHPVLTTLRDTKAQRGRDDIIYVRTAPRGVNPASNQVFDQGTGEFPLPLAGQ 60

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAN83576.15.7e-1652.50hypothetical protein VITISV_021757 [Vitis vinifera][more]
PKI33354.12.2e-1262.67hypothetical protein CRG98_046251 [Punica granatum][more]
OIT40703.16.5e-1259.49hypothetical protein A4A49_63613 [Nicotiana attenuata][more]
KAG6736883.11.4e-1168.12hypothetical protein POTOM_060194 [Populus tomentosa][more]
PWA81401.13.2e-1154.37cytochrome c-type biogenesis protein CcmF, mitochondrion [Artemisia annua][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6N2MN257.2e-1761.05Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS388815 PE=4 SV=... [more]
A5BTL12.8e-1652.50Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_021757 PE=4 SV=1[more]
A0A6N2KT432.2e-1367.14Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS135830 PE=4 SV=... [more]
A0A6N2KH662.2e-1367.14Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS25461 PE=4 SV=1[more]
A0A2I0HNP41.1e-1262.67Uncharacterized protein OS=Punica granatum OX=22663 GN=CRG98_046251 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..93
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 22..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062210.1CcUC04G062210.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane