CcUC04G062200 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062200
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 14869863 .. 14870413 (+)
RNA-Seq ExpressionCcUC04G062200
SyntenyCcUC04G062200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTTCAACGATCATTGTATTGAAACTCGAATAATGGATGGTGAGATTAGAATATTGTCAAACTATGTTTATGATATCCTTATTGCCGGAAATTCCTTGTTTGCCATAAATCGAACTCAAAATTGGGGATGGGTGAAGCTTCTTCTGTGTTTGGAAATAGCAGGTGGCTGTGTTATCCGCCCGAACAACAAGTCAAGGTAAGCTTCCAAAGCTCCCTCCTGCCCGCTGACTGGCAACGTTACTGAGAACCTAGGAACTGCTGATTTTGAGCCACAACTATTTATTATAGTTGGCAAGGCTTGGAAGCAAGCTACCAGCGCCTATCGGCGAGAACTAGGCTTGGCTTGGTTAGTAGTGCCCGCCCCCTTGTCCTGGAGGCTTGCCGGCCCATGAATTCTTCAGAGCGGGCCGGCAGGCCGGGCGAACGGGGACCGTCGAAGAAGTGCCTTGACGCGCCGCAGCCACTACTTCTCCTCCTTTTATGCAATTATGAACTCCACGGAACTTTATCAATTCCAACACAACTTATCCTTTTGGAGCTGACGTAA

mRNA sequence

ATGAATTTCAACGATCATTGTATTGAAACTCGAATAATGGATGGTGAGATTAGAATATTGTCAAACTATGTTTATGATATCCTTATTGCCGGAAATTCCTTGTTTGCCATAAATCGAACTCAAAATTGGGGATGGGTGAAGCTTCTTCTGTGTTTGGAAATAGCAGGTGGCTGTGTTATCCGCCCGAACAACAAGTCAAGTTGGCAAGGCTTGGAAGCAAGCTACCAGCGCCTATCGGCGAGAACTAGGCTTGGCTTGGTTAGTAGTGCCCGCCCCCTTGTCCTGGAGGCTTGCCGGCCCATGAATTCTTCAGAGCGGGCCGGCAGGCCGGGCGAACGGGGACCGTCGAAGAAGTGCCTTGACGCGCCGCAGCCACTACTTCTCCTCCTTTTATGCAATTATGAACTCCACGGAACTTTATCAATTCCAACACAACTTATCCTTTTGGAGCTGACGTAA

Coding sequence (CDS)

ATGAATTTCAACGATCATTGTATTGAAACTCGAATAATGGATGGTGAGATTAGAATATTGTCAAACTATGTTTATGATATCCTTATTGCCGGAAATTCCTTGTTTGCCATAAATCGAACTCAAAATTGGGGATGGGTGAAGCTTCTTCTGTGTTTGGAAATAGCAGGTGGCTGTGTTATCCGCCCGAACAACAAGTCAAGTTGGCAAGGCTTGGAAGCAAGCTACCAGCGCCTATCGGCGAGAACTAGGCTTGGCTTGGTTAGTAGTGCCCGCCCCCTTGTCCTGGAGGCTTGCCGGCCCATGAATTCTTCAGAGCGGGCCGGCAGGCCGGGCGAACGGGGACCGTCGAAGAAGTGCCTTGACGCGCCGCAGCCACTACTTCTCCTCCTTTTATGCAATTATGAACTCCACGGAACTTTATCAATTCCAACACAACTTATCCTTTTGGAGCTGACGTAA

Protein sequence

MNFNDHCIETRIMDGEIRILSNYVYDILIAGNSLFAINRTQNWGWVKLLLCLEIAGGCVIRPNNKSSWQGLEASYQRLSARTRLGLVSSARPLVLEACRPMNSSERAGRPGERGPSKKCLDAPQPLLLLLLCNYELHGTLSIPTQLILLELT
Homology
[Close]
BLAST of CcUC04G062200 vs. NCBI nr
Match: GFA71491.1 (cytochrome c biogenesis FN, mitochondrial [Tanacetum cinerariifolium])

HSP 1 Score: 64.7 bits (156), Expect = 7.9e-07
Identity = 33/46 (71.74%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 81  RTRLGLVSSARPLVLEACRPMNSSERAGRPGERGPSKKCLDAPQPL 127
           R    L S ARP V  ACRPMN SERAGRPG R PSKKCL+APQPL
Sbjct: 165 RPPTSLDSYARPSVSPACRPMNYSERAGRPGVREPSKKCLNAPQPL 210

The following BLAST results are available for this feature:
BLAST of CcUC04G062200 vs. NCBI nr
Match NameE-valueIdentityDescription
GFA71491.17.9e-0771.74cytochrome c biogenesis FN, mitochondrial [Tanacetum cinerariifolium][more]
BLAST of CcUC04G062200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G062200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CcUC04G062200 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062200.1CcUC04G062200.1mRNA