CcUC04G062170 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G062170
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionUnknown protein
LocationCicolChr04: 14865790 .. 14866560 (-)
RNA-Seq ExpressionCcUC04G062170
SyntenyCcUC04G062170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCCGAACCTGCACCAATATCGAGGACGATTTTCAGCCAATTCCCACCGATGAATTCAGCGGCTTGCGCATGAAACCCCGAGCCCCAGGCACTTTGTTCCACCGGGACGGCACCGACGACGGCAAGCAACGGGATTACGTAAGAGAGAGAGATGAATATAACAGAAACAAATAGGGCGACAGGGTAAGTTTTATGTGGGTTCTCAACTTCACCAGCCAATGTACTTACATTGTCCCAAAAGTTGAGGTTCCAAAAGAGAGTATTGAGATACAAATTCCAATCCCTTTTCACACCCATCTCACCGGAGCTAAGCCACCGGCGAGGCTGGATCTTCTGCATCGCGATCAAGGTCATTAAAATGATTGGTAAGAAGGAATAAAAGCCAAAACAATGGCGACGTATCCAACAATCGTCAACCCGAAGTAGTTGAGAAGTGAGAGGAGTATGGTCGAAACAAAGACGGCGATTCGGCGAGGCCAACCGGATTCTAAGGCCGGGAATATTTTCTCGATGTAGCTGATGAAGAACGCTGGGAAGGCTGTAATGTTCATGATTCCGCTAAAGATCTTCCAAGTGCCCATGAGGGAACCACAAAAGGGTCCAAAGGCTCGCTCCGCCCATATCACAAAACCGCCATTCCCGGGAAAGGTGGTGGTGAGCTCCGCCGTGATCAATGCTTCAGGGACACTCCATAAAAATGGGAAGACAATGAAGCCGATAATCGCGAATAGGGATCCAGCAGCTTGTACCGCTGGCTCTTCGCCGTAA

mRNA sequence

ATGCTCCGAACCTGCACCAATATCGAGGACGATTTTCAGCCAATTCCCACCGATGAATTCAGCGGCTTGCGCATGAAACCCCGAGCCCCAGGCACTTTGTTCCACCGGGACGGCACCGACGACGGCAAGCAACGGGATTACCTGATGAAGAACGCTGGGAAGGCTGTAATGTTCATGATTCCGCTAAAGATCTTCCAAGTGCCCATGAGGGAACCACAAAAGGGTCCAAAGGCTCGCTCCGCCCATATCACAAAACCGCCATTCCCGGGAAAGGTGGTGGTGAGCTCCGCCGTGATCAATGCTTCAGGGACACTCCATAAAAATGGGAAGACAATGAAGCCGATAATCGCGAATAGGGATCCAGCAGCTTGTACCGCTGGCTCTTCGCCGTAA

Coding sequence (CDS)

ATGCTCCGAACCTGCACCAATATCGAGGACGATTTTCAGCCAATTCCCACCGATGAATTCAGCGGCTTGCGCATGAAACCCCGAGCCCCAGGCACTTTGTTCCACCGGGACGGCACCGACGACGGCAAGCAACGGGATTACCTGATGAAGAACGCTGGGAAGGCTGTAATGTTCATGATTCCGCTAAAGATCTTCCAAGTGCCCATGAGGGAACCACAAAAGGGTCCAAAGGCTCGCTCCGCCCATATCACAAAACCGCCATTCCCGGGAAAGGTGGTGGTGAGCTCCGCCGTGATCAATGCTTCAGGGACACTCCATAAAAATGGGAAGACAATGAAGCCGATAATCGCGAATAGGGATCCAGCAGCTTGTACCGCTGGCTCTTCGCCGTAA

Protein sequence

MLRTCTNIEDDFQPIPTDEFSGLRMKPRAPGTLFHRDGTDDGKQRDYLMKNAGKAVMFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIANRDPAACTAGSSP
Homology
BLAST of CcUC04G062170 vs. NCBI nr
Match: KCW87084.1 (hypothetical protein EUGRSUZ_B03618 [Eucalyptus grandis])

HSP 1 Score: 113.2 bits (282), Expect = 1.7e-21
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 49  MKNAGKAVMFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKN 108
           M+  GKA M M PL+ FQVPMREP+KGPKARSA +TKPP PG  V SSAV+ ASGTLH  
Sbjct: 1   MQRTGKAAMLMTPLRNFQVPMREPKKGPKARSAQMTKPPLPGNAVESSAVMRASGTLHMK 60

Query: 109 GKTMKPIIANRDPAACTAGSSP 131
           GK  KP  A++ PAACTAGSSP
Sbjct: 61  GKMEKPRRASKGPAACTAGSSP 82

BLAST of CcUC04G062170 vs. NCBI nr
Match: GFD51465.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 91.3 bits (225), Expect = 6.7e-15
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0

Query: 57  MFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPII 116
           MF+ P++ F  P+++PQKGP A  A +T PPFPGKVV SSAV  ASG  H NG  +KP I
Sbjct: 1   MFITPVRNFHEPIKDPQKGPNALWAQMTNPPFPGKVVESSAVTRASGIAHINGNIVKPKI 60

Query: 117 ANRDPAACTAGSSP 131
           A   PAACTAGSSP
Sbjct: 61  ARSGPAACTAGSSP 74

BLAST of CcUC04G062170 vs. NCBI nr
Match: ABG22080.1 (hypothetical protein LOC_Os12g41634 [Oryza sativa Japonica Group])

HSP 1 Score: 63.5 bits (153), Expect = 1.5e-06
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 68  PMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIANRDPAACTA 127
           PM +P+KGP ARSA  T PPFPG  V SSAV++ SGT    GK  K   AN  PA C A
Sbjct: 8   PMSDPEKGPNARSAQTTNPPFPGIAVESSAVMSDSGTAQMTGKMRKLSSANSRPADCDA 66

BLAST of CcUC04G062170 vs. NCBI nr
Match: ONK73361.1 (uncharacterized protein A4U43_C04F30430 [Asparagus officinalis])

HSP 1 Score: 61.6 bits (148), Expect = 5.7e-06
Identity = 38/71 (53.52%), Postives = 40/71 (56.34%), Query Frame = 0

Query: 59  MIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIAN 118
           M P + FQV MREP KGPKAR A  TKPP P +   SS VI A G     GK  KP I  
Sbjct: 1   MTPERNFQVAMREPGKGPKARWAQRTKPPLPWRAAASSTVIRALGMDQTKGKRRKPRIER 60

Query: 119 RDPAACTAGSS 130
           R  AA   GSS
Sbjct: 61  RG-AAAREGSS 70

BLAST of CcUC04G062170 vs. ExPASy TrEMBL
Match: A0A059D9C1 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03618 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 8.0e-22
Identity = 56/82 (68.29%), Postives = 63/82 (76.83%), Query Frame = 0

Query: 49  MKNAGKAVMFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKN 108
           M+  GKA M M PL+ FQVPMREP+KGPKARSA +TKPP PG  V SSAV+ ASGTLH  
Sbjct: 1   MQRTGKAAMLMTPLRNFQVPMREPKKGPKARSAQMTKPPLPGNAVESSAVMRASGTLHMK 60

Query: 109 GKTMKPIIANRDPAACTAGSSP 131
           GK  KP  A++ PAACTAGSSP
Sbjct: 61  GKMEKPRRASKGPAACTAGSSP 82

BLAST of CcUC04G062170 vs. ExPASy TrEMBL
Match: A0A699WV44 (Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_923434 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 3.3e-15
Identity = 45/74 (60.81%), Postives = 53/74 (71.62%), Query Frame = 0

Query: 57  MFMIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPII 116
           MF+ P++ F  P+++PQKGP A  A +T PPFPGKVV SSAV  ASG  H NG  +KP I
Sbjct: 1   MFITPVRNFHEPIKDPQKGPNALWAQMTNPPFPGKVVESSAVTRASGIAHINGNIVKPKI 60

Query: 117 ANRDPAACTAGSSP 131
           A   PAACTAGSSP
Sbjct: 61  ARSGPAACTAGSSP 74

BLAST of CcUC04G062170 vs. ExPASy TrEMBL
Match: A0A0A9E3F8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 6.4e-11
Identity = 41/72 (56.94%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 59  MIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIAN 118
           M  L+ F VP  EP  GPKARSAH TKPP PG    SSAV + SGT H  GKT KP    
Sbjct: 1   MTQLRYFHVPRSEPASGPKARSAHRTKPPLPGSAAASSAVTSDSGTPHAKGKTRKPRSVK 60

Query: 119 RDPAACTAGSSP 131
             PAA TA S P
Sbjct: 61  SGPAARTARSEP 72

BLAST of CcUC04G062170 vs. ExPASy TrEMBL
Match: H2KX63 (Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g41634 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 7.3e-07
Identity = 33/59 (55.93%), Postives = 37/59 (62.71%), Query Frame = 0

Query: 68  PMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIANRDPAACTA 127
           PM +P+KGP ARSA  T PPFPG  V SSAV++ SGT    GK  K   AN  PA C A
Sbjct: 8   PMSDPEKGPNARSAQTTNPPFPGIAVESSAVMSDSGTAQMTGKMRKLSSANSRPADCDA 66

BLAST of CcUC04G062170 vs. ExPASy TrEMBL
Match: A0A5P1F9P4 (Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F30430 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.8e-06
Identity = 38/71 (53.52%), Postives = 40/71 (56.34%), Query Frame = 0

Query: 59  MIPLKIFQVPMREPQKGPKARSAHITKPPFPGKVVVSSAVINASGTLHKNGKTMKPIIAN 118
           M P + FQV MREP KGPKAR A  TKPP P +   SS VI A G     GK  KP I  
Sbjct: 1   MTPERNFQVAMREPGKGPKARWAQRTKPPLPWRAAASSTVIRALGMDQTKGKRRKPRIER 60

Query: 119 RDPAACTAGSS 130
           R  AA   GSS
Sbjct: 61  RG-AAAREGSS 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KCW87084.11.7e-2168.29hypothetical protein EUGRSUZ_B03618 [Eucalyptus grandis][more]
GFD51465.16.7e-1560.81hypothetical protein [Tanacetum cinerariifolium][more]
ABG22080.11.5e-0655.93hypothetical protein LOC_Os12g41634 [Oryza sativa Japonica Group][more]
ONK73361.15.7e-0653.52uncharacterized protein A4U43_C04F30430 [Asparagus officinalis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A059D9C18.0e-2268.29Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_B03618 PE=4 SV... [more]
A0A699WV443.3e-1560.81Uncharacterized protein OS=Tanacetum cinerariifolium OX=118510 GN=Tci_923434 PE=... [more]
A0A0A9E3F86.4e-1156.94Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
H2KX637.3e-0755.93Uncharacterized protein OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g416... [more]
A0A5P1F9P42.8e-0653.52Uncharacterized protein OS=Asparagus officinalis OX=4686 GN=A4U43_C04F30430 PE=4... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G062170.1CcUC04G062170.1mRNA