CcUC04G061910 (gene) Watermelon (PI 537277) v1

Overview


Name	CcUC04G061910
Type	gene
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NADH-ubiquinone oxidoreductase chain 6
Location	CicolChr04: 13745785 .. 13746973 (-)
RNA-Seq Expression	CcUC04G061910
Synteny	CcUC04G061910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATCAGTATCTCCGTGGATAGAGATAAAGATAGGGATCCATCTAGATCTTGATTCACTATTTCCATTTTTTTTATTGATTGCCTTTTTTTTGACAATAAGTTTGAAATCTTAATGCAGGCAAGGAAAGAGAGTTTTGCTATTGTTACTTGCAGAATCGGAGCGTAGACAAGCGAGCAGAGCCCAAGGAACGGGGAAGCCCGTCATAGAGCAGTCTTCTACTTCTAGTAGACTGCTGGCCTGAGAGAAGATGGCCTCTCTCGGCAAACATGGCCTAATTTCTCTTCTTTCTTTTTGATTTCAGGTCTCTTTCTTTTTTCAGGGGCCTAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTTTGATCAACCTGGAAACATCACAAATTCTCGACGTCGAGAGAGATTTGAGATTCCGTAAGTAACTCAGCGAGTGCTTTCTAAGAAGCGCTTGACTTGGAAGAAGAAAATGAAATACGAACAACCGCGCTGGTCGTAATAGATCGACTTTCATGCTAGTTCTTGCTCCAGCATGAAAGTTCCATTTCAGGGAAGGACGACGTACCATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGATACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGTAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGATCATATAGGAGCTATAGCCGTTTCATTCCTAATCATTGTTGTGATGTTCCATATTCAAATAGCGGATGTTCACGAAGAAGTCTTGCGCTATTTACCAATGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTATTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACAGTTTATGCCGGAAAGGTACAAAGTTGGACTAATTTGGAAACATTGGGCAAATTTACTTTATACCTACTATTCCGTCTAGTTTTTGGTTTCTAGTCTGATTTTATTAGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTTCGACGAAATGCTATTGATTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA

mRNA sequence

ATGTATCAGCAAGGAAAGAGAGTTTTGCTATTGTTACTTGCAGAATCGGAGCGTAGACAAGCGAGCAGAGCCCAAGGAACGGGGAAGCCCGGGCCTAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTTTGATCAACCTGGAAACATCACAAATTCTCGACGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGATACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGTAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGATCATATAGGAGCTATAGCCGTTTCATTCCTAATCATTGTTGTGATGTTCCATATTCAAATAGCGGATGTTCACGAAGAAGTCTTGCGCTATTTACCAATGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTATTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACAGTTTATGCCGGAAAGGTACAAAGTTGGACTAATTTGGAAACATTGGGCAAATTTACTTTATACCTACTATTCCGTCTAGTTTTTGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTTCGACGAAATGCTATTGATTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA

Coding sequence (CDS)

ATGTATCAGCAAGGAAAGAGAGTTTTGCTATTGTTACTTGCAGAATCGGAGCGTAGACAAGCGAGCAGAGCCCAAGGAACGGGGAAGCCCGGGCCTAGAACGCTAAAAGGTGGGGGAGAAGCAAGCCGAACCTTTGATCAACCTGGAAACATCACAAATTCTCGACGTCGAGAGAGATTTGAGATTCCGGAAGGACGACGTACCATGATACTTTCCGTTTTGTCGAGCCCAGCTTTGGTCTCTGGTTTGATGGTTGTACGTGCTAAAAATCCGATACATTCCGTTTTGTTTCCCATCCCAGTCTTTCGTAACACTTCAGGTTTACTTCTTTTGTTAGGTCTCGACTTCTTCGCTATGATCTTCCCAGTAGATCATATAGGAGCTATAGCCGTTTCATTCCTAATCATTGTTGTGATGTTCCATATTCAAATAGCGGATGTTCACGAAGAAGTCTTGCGCTATTTACCAATGAGTGGTATTATTGGACTGATCTTTTGGTGGGAAATGTTATTCATTTTAGATAATGAAACCATTCCATTACTACCAACCCAAAGAAATACGACCTCTCTTAGATATACAGTTTATGCCGGAAAGGTACAAAGTTGGACTAATTTGGAAACATTGGGCAAATTTACTTTATACCTACTATTCCGTCTAGTTTTTGTAGCCATGATTGGGGCTATAGTACTGACTATGCATAGGACTACTAAGGTGAAAAGACAGGATGTATTTCGACGAAATGCTATTGATTTTAGGAGGACTATAATGAGGAGGACGACAGACCCACTCACGATCTACTAA

Protein sequence

MYQQGKRVLLLLLAESERRQASRAQGTGKPGPRTLKGGGEASRTFDQPGNITNSRRRERFEIPEGRRTMILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGAIAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAGKVQSWTNLETLGKFTLYLLFRLVFVAMIGAIVLTMHRTTKVKRQDVFRRNAIDFRRTIMRRTTDPLTIY

Homology

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BLAST of CcUC04G061910 vs. NCBI nr
Match: MBA0757956.1 (hypothetical protein [Gossypium trilobum])

HSP 1 Score: 357.1 bits (915), Expect = 1.3e-94
Identity = 202/263 (76.81%), Postives = 223/263 (84.79%), Query Frame = 0


Query: 14  AESERRQASRAQ---GTGKPGPRTLKGGGEASRTFDQPGNITNSRRRERFEIPEGRRTMI 73
           A ++ ++AS+ Q      K G +  + GGEASRT D+P +I NSRRRERFEIPEGRRTMI
Sbjct: 3   AVAKNKEASQDQWRVAPVKDGKKDFQ-GGEASRTSDRPRHIKNSRRRERFEIPEGRRTMI 62

Query: 74  LSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGAIA 133
           LSVLSSPALVSGLMV RAKNP+HSVLFPI VFR+TSGLLLLLGLDF AMIFPV HIGAIA
Sbjct: 63  LSVLSSPALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIA 122

Query: 134 VSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSL 193
           VSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTTSL
Sbjct: 123 VSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSL 182

Query: 194 RYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTT--KVKRQ 253
           RYTVYA KV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTT   VKRQ
Sbjct: 183 RYTVYAVKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQ 242

Query: 254 DVFRRNAIDFRRTIMRRTTDPLT 265
           DVFRRNAI FRRTIMRRTTDP+T
Sbjct: 243 DVFRRNAISFRRTIMRRTTDPIT 264

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BLAST of CcUC04G061910 vs. NCBI nr
Match: YP_003587236.1 (NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009913621.1 NADH dehydrogenase subunit 6 [Luffa acutangula] >ACV96641.1 NADH dehydrogenase subunit 6 [Citrullus lanatus] >QLJ93016.1 NADH dehydrogenase subunit 6 [Luffa acutangula])

HSP 1 Score: 338.2 bits (866), Expect = 6.5e-89
Identity = 180/205 (87.80%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMVVRAKNP+HSVLFPIPVFRNTSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

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BLAST of CcUC04G061910 vs. NCBI nr
Match: AUD57050.1 (NADH dehydrogenase subunit 6 [Pentas lanceolata])

HSP 1 Score: 337.4 bits (864), Expect = 1.1e-88
Identity = 179/205 (87.32%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMVVRAKNP+HSVLFPIPVFRNTSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

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BLAST of CcUC04G061910 vs. NCBI nr
Match: QHD19721.1 (NADH dehydrogenase subunit 6 [Hemiptelea davidii])

HSP 1 Score: 335.5 bits (859), Expect = 4.2e-88
Identity = 178/205 (86.83%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMV RAKNP+HSVLFPIPVFR+TSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. NCBI nr
Match: YP_009243675.1 (NADH dehydrogenase subunit 6 [Cannabis sativa] >ALF04059.1 NADH dehydrogenase subunit 6 [Cannabis sativa] >AMC32992.1 NADH dehydrogenase subunit 6 [Cannabis sativa] >AMR97546.1 NADH dehydrogenase subunit 6 [Cannabis sativa] >ANC49129.1 NADH dehydrogenase subunit 6 [Cannabis sativa] >QJE38196.1 NADH dehydrogenase subunit 6 [Cannabis sativa])

HSP 1 Score: 334.7 bits (857), Expect = 7.2e-88
Identity = 177/205 (86.34%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMV RAKNP+HSVLFPIPVFR+TSGLL+LLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLILLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. ExPASy Swiss-Prot
Match: P60498 (NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=2 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 2.7e-90
Identity = 177/205 (86.34%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMV RAKNP+HSVLFPIPVFR+TSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. ExPASy Swiss-Prot
Match: P60497 (NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE=1 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 6.5e-84
Identity = 171/205 (83.41%), Postives = 184/205 (89.76%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSS ALVSGLMVVRAKNP+HSVLF I VF +TSGLLLLLGLDFFAMIF V +IGA
Sbjct: 1   MILSVLSSLALVSGLMVVRAKNPVHSVLFFILVFCDTSGLLLLLGLDFFAMIFLVVYIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAV FL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVLFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. ExPASy Swiss-Prot
Match: Q02500 (NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 1.0e-81
Identity = 166/211 (78.67%), Postives = 181/211 (85.78%), Query Frame = 0


Query: 59  RFEIPEGRRTMILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFA 118
           +F    GRRTMILSVLSSPALVSGLMVVRAKNP+HSVLFPI VF +TSGLL+LLGLDF A
Sbjct: 9   KFHFKGGRRTMILSVLSSPALVSGLMVVRAKNPVHSVLFPILVFCDTSGLLILLGLDFSA 68

Query: 119 MIFPVDHIGAIAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETI 178
           MI PV HIGAIAVSFL +V+MF+IQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETI
Sbjct: 69  MISPVVHIGAIAVSFLFVVMMFNIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETI 128

Query: 179 PLLPTQRNTTSLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLT 238
           PLLPT RNTTSLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLT
Sbjct: 129 PLLPTHRNTTSLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLT 188

Query: 239 MHRTTKVKRQDVFRRNAIDFRRTIMRRTTDP 263
           MHRTTKVKRQDVFRRNA+D R  IM RT  P
Sbjct: 189 MHRTTKVKRQDVFRRNALDSRSHIMNRTISP 219

[Close]

BLAST of CcUC04G061910 vs. ExPASy Swiss-Prot
Match: P26850 (NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 PE=2 SV=2)

HSP 1 Score: 224.2 bits (570), Expect = 1.8e-57
Identity = 123/187 (65.78%), Postives = 150/187 (80.21%), Query Frame = 0


Query: 78  ALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGAIAVSFLIIV 137
           ALVSG MV+RAKNP+HSVLF I VF NTSGLL+LLGLDFFAMIF V ++GAIAV FL +V
Sbjct: 11  ALVSGAMVIRAKNPVHSVLFLILVFCNTSGLLVLLGLDFFAMIFLVVYVGAIAVLFLFVV 70

Query: 138 VMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSLRYTVYAG 197
           +M HI+I ++HE VLRYLP+ GIIGLIF  E+  ++DN+ IP+LPT+ + T L YTVYAG
Sbjct: 71  MMLHIRIEEIHENVLRYLPVGGIIGLIFLLEIFLMVDNDYIPILPTKLSATYLTYTVYAG 130

Query: 198 KVQSWTNLETLGK------FTLYLLFRLV-FVAMIGAIVLTMHRTTKVKRQDVFRRNAID 257
           K+ SWTNLETLG       F L+L+  L+  VA+IGAIVLTMH+TTKVKRQDVF +NAID
Sbjct: 131 KIHSWTNLETLGNLLYTTYFFLFLVSSLILLVALIGAIVLTMHKTTKVKRQDVFIQNAID 190

[Close]

BLAST of CcUC04G061910 vs. ExPASy Swiss-Prot
Match: Q37626 (NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 2.5e-35
Identity = 89/199 (44.72%), Postives = 129/199 (64.82%), Query Frame = 0


Query: 73  VLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGAIAVS 132
           + SS  L+SG +V++A+NP+HSVLF + VF N +GLL+LLGLDFFA+IF V ++GAIAV 
Sbjct: 7   IFSSLTLISGSLVIQARNPVHSVLFLVLVFFNAAGLLVLLGLDFFALIFLVVYVGAIAVL 66

Query: 133 FLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSLRY 192
           FL +V+M +I+I ++ E+ LRYLP+ G++G++F +E+  ++DN+ IPLL      T+L  
Sbjct: 67  FLFVVMMLNIRITEISEKRLRYLPVGGVLGVLFLFEICILIDNDCIPLLSYDIENTALLA 126

Query: 193 TVYAGKVQSWT-------NLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKV 252
                    W         ++ LG   +T Y  F LV      VAMIGAIVLTM +  ++
Sbjct: 127 NYNQLSFIDWRMYLSTSHTIDALGSLLYTYYFYFFLVASLILLVAMIGAIVLTMQKGIRI 186

Query: 253 KRQDVFRRNAIDFRRTIMR 258
           KRQ VF +N  DF +TI +
Sbjct: 187 KRQQVFLQNTRDFAKTIRK 205

[Close]

BLAST of CcUC04G061910 vs. ExPASy TrEMBL
Match: A0A7J9DB23 (Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_020999 PE=3 SV=1)

HSP 1 Score: 357.1 bits (915), Expect = 6.5e-95
Identity = 202/263 (76.81%), Postives = 223/263 (84.79%), Query Frame = 0


Query: 14  AESERRQASRAQ---GTGKPGPRTLKGGGEASRTFDQPGNITNSRRRERFEIPEGRRTMI 73
           A ++ ++AS+ Q      K G +  + GGEASRT D+P +I NSRRRERFEIPEGRRTMI
Sbjct: 3   AVAKNKEASQDQWRVAPVKDGKKDFQ-GGEASRTSDRPRHIKNSRRRERFEIPEGRRTMI 62

Query: 74  LSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGAIA 133
           LSVLSSPALVSGLMV RAKNP+HSVLFPI VFR+TSGLLLLLGLDF AMIFPV HIGAIA
Sbjct: 63  LSVLSSPALVSGLMVARAKNPVHSVLFPILVFRDTSGLLLLLGLDFSAMIFPVVHIGAIA 122

Query: 134 VSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTTSL 193
           VSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTTSL
Sbjct: 123 VSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTTSL 182

Query: 194 RYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTT--KVKRQ 253
           RYTVYA KV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTT   VKRQ
Sbjct: 183 RYTVYAVKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTHGAVKRQ 242

Query: 254 DVFRRNAIDFRRTIMRRTTDPLT 265
           DVFRRNAI FRRTIMRRTTDP+T
Sbjct: 243 DVFRRNAISFRRTIMRRTTDPIT 264

[Close]

BLAST of CcUC04G061910 vs. ExPASy TrEMBL
Match: A0A7D5Y436 (NADH-ubiquinone oxidoreductase chain 6 OS=Luffa acutangula OX=56866 GN=nad6 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 3.1e-89
Identity = 180/205 (87.80%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMVVRAKNP+HSVLFPIPVFRNTSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. ExPASy TrEMBL
Match: D5I3A6 (NADH-ubiquinone oxidoreductase chain 6 OS=Citrullus lanatus OX=3654 GN=nad6 PE=3 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 3.1e-89
Identity = 180/205 (87.80%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMVVRAKNP+HSVLFPIPVFRNTSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVSSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. ExPASy TrEMBL
Match: A0A2H4YAP8 (NADH-ubiquinone oxidoreductase chain 6 OS=Pentas lanceolata OX=25385 GN=nad6 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 5.3e-89
Identity = 179/205 (87.32%), Postives = 190/205 (92.68%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMVVRAKNP+HSVLFPIPVFRNTSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVVRAKNPVHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. ExPASy TrEMBL
Match: A0A6B9MKM4 (NADH-ubiquinone oxidoreductase chain 6 OS=Hemiptelea davidii OX=63068 GN=nad6 PE=3 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 2.0e-88
Identity = 178/205 (86.83%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMV RAKNP+HSVLFPIPVFR+TSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNETIPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNETIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYFVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. TAIR 10
Match: ATMG00270.1 (NADH dehydrogenase 6 )

HSP 1 Score: 333.2 bits (853), Expect = 1.9e-91
Identity = 177/205 (86.34%), Postives = 189/205 (92.20%), Query Frame = 0


Query: 69  MILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIGA 128
           MILSVLSSPALVSGLMV RAKNP+HSVLFPIPVFR+TSGLLLLLGLDFFAMIFPV HIGA
Sbjct: 1   MILSVLSSPALVSGLMVARAKNPVHSVLFPIPVFRDTSGLLLLLGLDFFAMIFPVVHIGA 60

Query: 129 IAVSFLIIVVMFHIQIADVHEEVLRYLPMSGIIGLIFWWEMLFILDNETIPLLPTQRNTT 188
           IAVSFL +V+MFHIQIA++HEEVLRYLP+SGIIGLIFWWEM FILDNE+IPLLPTQRNTT
Sbjct: 61  IAVSFLFVVMMFHIQIAEIHEEVLRYLPVSGIIGLIFWWEMFFILDNESIPLLPTQRNTT 120

Query: 189 SLRYTVYAGKVQSWTNLETLGK--FTLYLLFRLV-----FVAMIGAIVLTMHRTTKVKRQ 248
           SLRYTVYAGKV+SWTNLETLG   +T Y ++ LV      VAMIGAIVLTMHRTTKVKRQ
Sbjct: 121 SLRYTVYAGKVRSWTNLETLGNLLYTYYSVWFLVPSLILLVAMIGAIVLTMHRTTKVKRQ 180

Query: 249 DVFRRNAIDFRRTIMRRTTDPLTIY 267
           DVFRRNAIDFRRTIMRRTTDPLTIY
Sbjct: 181 DVFRRNAIDFRRTIMRRTTDPLTIY 205

[Close]

BLAST of CcUC04G061910 vs. TAIR 10
Match: AT2G07718.1 (Cytochrome b/b6 protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-09
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 68  TMILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIG 127
           TMILSVLSSPALVSGLMV RAKN +HSVLFPIP+F + + L       +F  +  + H+ 
Sbjct: 44  TMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLA 103

Query: 128 AIAVSFLIIVVMF 141
                 L ++  F
Sbjct: 104 TKCQLLLFLISHF 111

[Close]

BLAST of CcUC04G061910 vs. TAIR 10
Match: ATMG00590.1 (Cytochrome b/b6 protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.4e-09
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 68  TMILSVLSSPALVSGLMVVRAKNPIHSVLFPIPVFRNTSGLLLLLGLDFFAMIFPVDHIG 127
           TMILSVLSSPALVSGLMV RAKN +HSVLFPIP+F + + L       +F  +  + H+ 
Sbjct: 44  TMILSVLSSPALVSGLMVARAKNLVHSVLFPIPIFFSINQL-----FHYFCRLPIIKHLA 103

Query: 128 AIAVSFLIIVVMF 141
                 L ++  F
Sbjct: 104 TKCQLLLFLISHF 111

The following BLAST results are available for this feature:

BLAST of CcUC04G061910 vs. NCBI nr


Match Name	E-value	Identity	Description
MBA0757956.1	1.3e-94	76.81	hypothetical protein [Gossypium trilobum]	[more]
YP_003587236.1	6.5e-89	87.80	NADH dehydrogenase subunit 6 [Citrullus lanatus] >YP_009913621.1 NADH dehydrogen...	[more]
AUD57050.1	1.1e-88	87.32	NADH dehydrogenase subunit 6 [Pentas lanceolata]	[more]
QHD19721.1	4.2e-88	86.83	NADH dehydrogenase subunit 6 [Hemiptelea davidii]	[more]
YP_009243675.1	7.2e-88	86.34	NADH dehydrogenase subunit 6 [Cannabis sativa] >ALF04059.1 NADH dehydrogenase su...	[more]

BLAST of CcUC04G061910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P60498	2.7e-90	86.34	NADH-ubiquinone oxidoreductase chain 6 OS=Brassica campestris OX=3711 GN=ND6 PE=...	[more]
P60497	6.5e-84	83.41	NADH-ubiquinone oxidoreductase chain 6 OS=Arabidopsis thaliana OX=3702 GN=ND6 PE...	[more]
Q02500	1.0e-81	78.67	NADH-ubiquinone oxidoreductase chain 6 OS=Triticum aestivum OX=4565 GN=ND6 PE=3 ...	[more]
P26850	1.8e-57	65.78	NADH-ubiquinone oxidoreductase chain 6 OS=Marchantia polymorpha OX=3197 GN=ND6 P...	[more]
Q37626	2.5e-35	44.72	NADH-ubiquinone oxidoreductase chain 6 OS=Prototheca wickerhamii OX=3111 GN=ND6 ...	[more]

BLAST of CcUC04G061910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J9DB23	6.5e-95	76.81	Uncharacterized protein (Fragment) OS=Gossypium trilobum OX=34281 GN=Gotri_02099...	[more]
A0A7D5Y436	3.1e-89	87.80	NADH-ubiquinone oxidoreductase chain 6 OS=Luffa acutangula OX=56866 GN=nad6 PE=3...	[more]
D5I3A6	3.1e-89	87.80	NADH-ubiquinone oxidoreductase chain 6 OS=Citrullus lanatus OX=3654 GN=nad6 PE=3...	[more]
A0A2H4YAP8	5.3e-89	87.32	NADH-ubiquinone oxidoreductase chain 6 OS=Pentas lanceolata OX=25385 GN=nad6 PE=...	[more]
A0A6B9MKM4	2.0e-88	86.83	NADH-ubiquinone oxidoreductase chain 6 OS=Hemiptelea davidii OX=63068 GN=nad6 PE...	[more]

BLAST of CcUC04G061910 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00270.1	1.9e-91	86.34	NADH dehydrogenase 6	[more]
AT2G07718.1	5.4e-09	49.32	Cytochrome b/b6 protein	[more]
ATMG00590.1	5.4e-09	49.32	Cytochrome b/b6 protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001457	NADH:ubiquinone/plastoquinone oxidoreductase, chain 6	PFAM	PF00499	Oxidored_q3	coord: 82..230 e-value: 8.0E-15 score: 54.8
IPR042106	NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	GENE3D	1.20.120.1200		coord: 68..232 e-value: 1.3E-21 score: 78.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 20..54
None	No IPR available	PANTHER	PTHR33269	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 64..256
None	No IPR available	PANTHER	PTHR33269:SF5	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6	coord: 64..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CcUC04G061910.1	CcUC04G061910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0070469	respirasome
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity