CcUC04G061080 (gene) Watermelon (PI 537277) v1

Overview
NameCcUC04G061080
Typegene
OrganismCitrullus colocynthis (Watermelon (PI 537277) v1)
DescriptionLipoxygenase
LocationCicolChr04: 8464037 .. 8466963 (-)
RNA-Seq ExpressionCcUC04G061080
SyntenyCcUC04G061080
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGATCGCAGTCATAGATGACTGATAATGCTAATTTTTGTACAATTTAAGAGTGATTTAAAAAAAAAAAAAAATTACCAAGCATTACATTACTTTCCTTCACAAGTTTTATTTATTTATTATTTTTTTTTTAATCAAAATGATTGGGAATTATTTTAAGAGCCAGAACAAAGACCTATTGTTTCCATTGTTTGCATGTTGATAATTAATTTATAATTTATTAAAATATATTGATTTAAAATTTTATATGATTAATTGAAATTTCAATTAATTTTTTTATCTAAAATATTCGATAAAAGTACAAGAAAAAATAATTGTTATAGAAATTTAATCAATTAAAATTTGAAAACATATCCACGGCAAAAAAATTCTCATAATCTCTTCTTACTATTGCAAGTCTGATCCCAAATGATGTGTAAGCCTAACTCTACTTGGACTCATATAATTAAATTACACAAATTTAGTATTAAAATTAAAATCTAGCGCCGTTAAATGAGAAATTTTGAAACAAACACAAATTGTCATGTCATTTTTTAAATTAATGGCGACATTTAAAATAATCAAATTTGAGACTGATTAAAGGTTGACATGTGTCCAAATTGAAATTGAAGACATAAAGTTGAAAAATTTTATTTTTTAGAGTTTTGTTATTGGCGGTATATTTGTTTAAGGTTGTTGGTGTTTGGCTCCTTGGTTGTTTGTCACACAAGATGTCATTCCTACAATATATTTCTTTCCTTATCTGAAAAATTTTGCAGAGGTAATATTTTTAGATTTATTCCTTTTTTATGATTTGCTGAATTTGCGCGATGGGGGATATTTTCCTTTTTCGTTGTGCCTATTTATTTGCAAGTCGTTGCATTACTAGGGTTGTTGCTTTTACTTTGTTTAATTGGAGCTTTCGTTTTCTGTGGTGGCTAGAGATTGCAACTTCGACTCTAAACTATCTTTGATATGCAATCTGCTGTGAGAAATCTTTATCAAAGCTTTCTAAACAAGGGTTGTTCACAGTCTCAGGGGAGCATAAAATTTACTCTTGACGTAACATCCCAAATTTTAAGTTGATTTCAATTTAATTATCTTCAATTATTTAGGTGATAAATTGAATTTTTGAAGTTAAAATTGAATTATTAAGTTAAGATTATTCAATTTGGGTTAATTGATAAAGATTTGGAATTTGGATTTAATTCAATTGGTGAAATTTATTTTGATCGGAAGATTTAGAAGTTGGCACTTCCAATGCAAAAAGAGCAAAACAAAATACATTGATTATGTCCATAACCATAACTTATTATTTTTGCAAAAATGGTAAAAAACACGCCCAACCCGCGTGATACACCTAATACATGTGATACGCTTGGTACAGTTGATACATCTGATAACACATGCGTGATACACTTAATACACATGATACACTTCATAGACGTGATATACTTGATACCCCTTGATATACTTGATATCCCGGTGTGTGTATGTTTCCAAATGCAATAAAATTTAAACTCAAACAAAACATTAGCTATTAAGTTTTCTTTCCAGCTGAAGAAGAGGTTGGTAGTTCAATTTGGCAACTTGCCAAAGCGCATGCGACCGTAAATGACTATGGCTGCCGTCAACTCATCAGCCATTGGTATAACTCATTTGTGGCATGAACTAAAAATTTGAGTAATAGTTCTAAATCATATGGATTCTTGAATATAATTTTGGTTTCTTGTAGGTTGAATGGTTATGTTGTAAGTAAGGCATTTGTGATTGCAATGAACTGAGGACTTAGTGTTCTTCATCCAGTTTACAAGAGACTCCATCCTCACTTTCGAGACACAATGAATATAAACATGTTTGCTAGATAGATATTCTTTAATGAAGTAGGCATTTTGGAAGCAACAGTGTTTCCATACAAATATGCAATGAAGACGTCAGCTGCTGCTTTATACAAGAATTGGGTTTCTCATGAACACACACTCCCTGCAGATGTCATCAAGAGGTAAAACATCCAAACCCTTGCACCAATTGTATTAAAAGGACAATGAAAAGAAGAAGAAGAAAAAGTTTTTGGTTTCATTGAAGTGTTTTGTTTTATGCTTGTTGCTCTCTACATTTGTCTAGATGTATGAATTTCTAGCTATTTGTTTAATTTGGTGTGATGAACTATGCCTTATACAACAAGTGTTTGTTGAAATTTCTAGGTAGAACTATCAAATCTTTTATTCTTAATGAGGTTGCAATTGTTTTTGATGCCTCAATTTGAGCAATACTTGTTGCTAATCCATCCTTTATTTTATATATGATGTCCTAACATCATGCTCGAATCAATAGGTGAGTTATTTGAATCTTCCTCAAATCTTACTTAAGCAACTGGTACATATTATTGTAAAATTCTTGACATTTTTTTCTAAATTCGAGTCTCACGTTCTTTATTGGTATGTGAACATTGCTCTTAATCTTATGACATGTTCCTCTTTCATTCCTTGTTTACTTTTGCTTGAATTGTTCCTTTGTGCAAATTCATATAATTCCAAAGTGAAGTTTCATCAGTTCAGCTGGGATACAAAGCTCTGAATTCAATTCACTCACTTTATTTGAAAAGAGAAGACCTATTATTTTGATTCAGCAAGCGAAGTACCCAAGTAGATTTAGCAAGTTAGAATGGTTTTCAATGTTTGATTTAGCAATTTAGAATGATTTGAGGAACCAAATTAAAGGGAGCACACAAACTATCATCACTGGAATTCAAGTTGCTTTCTTGTTGTGTGCAATTTCATCGAATATTTTGGTTAACAATTTTATTAGCATGCATTATCTCATTCTATAACACTCATTCCAATTTAATGATCATTAAATCTTGTAGGTACTTGTCTTTTAACAATCATAGTGGGTTGAGAGTGACACTAATGTCTATTAGCAACAAAACTGCGAATAGTTGA

mRNA sequence

ATGGATCTGAAGAAGAGGTTGGTAGTTCAATTTGGCAACTTGCCAAAGCGCATGCGACCGTTGAATGGTTATGTTGTAAGCATTTTGGAAGCAACAGTGTTTCCATACAAATATGCAATGAAGACGTCAGCTGCTGCTTTATACAAGAATTGGGTTTCTCATGAACACACACTCCCTGCAGATGTCATCAAGAGGTACTTGTCTTTTAACAATCATAGTGGGTTGAGAGTGACACTAATGTCTATTAGCAACAAAACTGCGAATAGTTGA

Coding sequence (CDS)

ATGGATCTGAAGAAGAGGTTGGTAGTTCAATTTGGCAACTTGCCAAAGCGCATGCGACCGTTGAATGGTTATGTTGTAAGCATTTTGGAAGCAACAGTGTTTCCATACAAATATGCAATGAAGACGTCAGCTGCTGCTTTATACAAGAATTGGGTTTCTCATGAACACACACTCCCTGCAGATGTCATCAAGAGGTACTTGTCTTTTAACAATCATAGTGGGTTGAGAGTGACACTAATGTCTATTAGCAACAAAACTGCGAATAGTTGA

Protein sequence

MDLKKRLVVQFGNLPKRMRPLNGYVVSILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSFNNHSGLRVTLMSISNKTANS
Homology
[Close]
BLAST of CcUC04G061080 vs. NCBI nr
Match: XP_038877032.1 (probable linoleate 9S-lipoxygenase 5 isoform X1 [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           I EATVFP KYAM+ S A LYK+WV HE  LPAD+IKR ++    N+  GLR+ +
Sbjct: 564 IFEATVFPSKYAMEMS-AVLYKDWVFHEQALPADLIKRGMAMEDSNSPHGLRLVI 617

[Close]
BLAST of CcUC04G061080 vs. NCBI nr
Match: XP_004139173.1 (probable linoleate 9S-lipoxygenase 5 isoform X2 [Cucumis sativus] >KAE8651603.1 hypothetical protein Csa_023446 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           ILEATVFP KYAM+ S A LYK+W  HE  LPAD+IKR ++    N+  GLR+ +
Sbjct: 566 ILEATVFPSKYAMEMS-AVLYKDWAFHEQALPADLIKRGMAIEDSNSPHGLRLVI 619

[Close]
BLAST of CcUC04G061080 vs. NCBI nr
Match: XP_038877033.1 (probable linoleate 9S-lipoxygenase 5 isoform X2 [Benincasa hispida])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           I EATVFP KYAM+ S A LYK+WV HE  LPAD+IKR ++    N+  GLR+ +
Sbjct: 416 IFEATVFPSKYAMEMS-AVLYKDWVFHEQALPADLIKRGMAMEDSNSPHGLRLVI 469

[Close]
BLAST of CcUC04G061080 vs. NCBI nr
Match: XP_011648826.1 (probable linoleate 9S-lipoxygenase 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 56.6 bits (135), Expect = 1.3e-04
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           ILEATVFP KYAM+ S A LYK+W  HE  LPAD+IKR ++    N+  GLR+ +
Sbjct: 568 ILEATVFPSKYAMEMS-AVLYKDWAFHEQALPADLIKRGMAIEDSNSPHGLRLVI 621

[Close]
BLAST of CcUC04G061080 vs. NCBI nr
Match: KAA0047988.1 (putative linoleate 9S-lipoxygenase 5 [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           ILEATVFP KYAM+ S + LYK+W  HE  LPAD+IKR ++    N+  GLR+ +
Sbjct: 783 ILEATVFPSKYAMEMS-SVLYKDWAFHEQALPADLIKRGMAIEDSNSPHGLRLVI 836

[Close]
BLAST of CcUC04G061080 vs. ExPASy Swiss-Prot
Match: Q43191 (Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum OX=4113 GN=LOX1.5 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.5e-05
Identity = 25/46 (54.35%), Postives = 33/46 (71.74%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSFNNHS 74
           +LE TVFP KYAM+ S A +YK+WV  E  LPAD+IKR ++  + S
Sbjct: 576 VLEMTVFPAKYAMEMS-AVVYKSWVFPEQALPADLIKRGVAVEDSS 620

[Close]
BLAST of CcUC04G061080 vs. ExPASy Swiss-Prot
Match: Q43190 (Probable linoleate 9S-lipoxygenase 4 OS=Solanum tuberosum OX=4113 GN=LOX1.4 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSFNNHS 74
           +LE+TVFP K+AM+ S A +YK+WV  +  LPAD++KR ++  + S
Sbjct: 574 VLESTVFPSKFAMEMS-AVVYKDWVFPDQALPADLVKRGVAVEDSS 618

[Close]
BLAST of CcUC04G061080 vs. ExPASy Swiss-Prot
Match: Q41238 (Linoleate 9S-lipoxygenase 6 (Fragment) OS=Solanum tuberosum OX=4113 GN=LOX1.6 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSFNNHS 74
           +LE+TVFP K+AM+ S A +YK+WV  +  LPAD++KR ++  + S
Sbjct: 571 VLESTVFPSKFAMEMS-AVVYKDWVFPDQALPADLVKRGVAVEDSS 615

[Close]
BLAST of CcUC04G061080 vs. ExPASy Swiss-Prot
Match: Q9LUW0 (Linoleate 9S-lipoxygenase 5 OS=Arabidopsis thaliana OX=3702 GN=LOX5 PE=1 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           +LE TVFP +YAM+ S +++YKNWV  E  LP D++KR ++    N+ +G+++ +
Sbjct: 595 VLERTVFPSRYAMEMS-SSIYKNWVFTEQALPKDLLKRGVAVEDPNSDNGVKLLI 648

[Close]
BLAST of CcUC04G061080 vs. ExPASy Swiss-Prot
Match: P38415 (Linoleate 9S-lipoxygenase A OS=Solanum lycopersicum OX=4081 GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.2e-04
Identity = 22/46 (47.83%), Postives = 34/46 (73.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSFNNHS 74
           +LE+TVFP K+AM+ S A +YK+WV  +  LPAD++KR ++  + S
Sbjct: 574 VLESTVFPSKFAMEMS-AVVYKDWVFPDQALPADLVKRGVAVEDSS 618

[Close]
BLAST of CcUC04G061080 vs. ExPASy TrEMBL
Match: A0A5A7TYE5 (Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00510 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           ILEATVFP KYAM+ S + LYK+W  HE  LPAD+IKR ++    N+  GLR+ +
Sbjct: 783 ILEATVFPSKYAMEMS-SVLYKDWAFHEQALPADLIKRGMAIEDSNSPHGLRLVI 836

[Close]
BLAST of CcUC04G061080 vs. ExPASy TrEMBL
Match: A0A803Q2I5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.0e-04
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSFNNHSG 75
           ILE TVFP KYAM+ S A +YKNWV  +H LPAD++KR ++  + SG
Sbjct: 582 ILEMTVFPGKYAMEMS-AVIYKNWVFTDHALPADLLKRGVAVEDSSG 627

[Close]
BLAST of CcUC04G061080 vs. ExPASy TrEMBL
Match: A0A059B806 (Lipoxygenase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04495 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.9e-04
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           ILEATVFP KYAM+ S +A+YKNW+  E  LPAD+IKR ++    N+  GLR+ +
Sbjct: 578 ILEATVFPAKYAMEMS-SAVYKNWIFPEQALPADLIKRGVAVEDANSPHGLRLLI 631

[Close]
BLAST of CcUC04G061080 vs. ExPASy TrEMBL
Match: A0A7J7CX31 (Lipoxygenase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01534 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.2e-04
Identity = 28/55 (50.91%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSFNNHS---GLRVTL 80
           +LE TVFP KYAM+ S +A+YKNW+  EH LPAD++KR ++  + S   GLR+ +
Sbjct: 590 VLEHTVFPAKYAMEMS-SAIYKNWIFTEHALPADLLKRGMAVPDSSCPHGLRLLI 643

[Close]
BLAST of CcUC04G061080 vs. ExPASy TrEMBL
Match: A0A058ZUF9 (Lipoxygenase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L01433 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.8e-04
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKR 66
           ILEATVFP KYAM+ S +A+YKNW+  E  LPAD+IKR
Sbjct: 600 ILEATVFPAKYAMEMS-SAVYKNWIFPEQALPADLIKR 636

[Close]
BLAST of CcUC04G061080 vs. TAIR 10
Match: AT3G22400.1 (PLAT/LH2 domain-containing lipoxygenase family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.6e-05
Identity = 23/55 (41.82%), Postives = 39/55 (70.91%), Query Frame = 0 

Query: 28  ILEATVFPYKYAMKTSAAALYKNWVSHEHTLPADVIKRYLSF---NNHSGLRVTL 80
           +LE TVFP +YAM+ S +++YKNWV  E  LP D++KR ++    N+ +G+++ +
Sbjct: 595 VLERTVFPSRYAMEMS-SSIYKNWVFTEQALPKDLLKRGVAVEDPNSDNGVKLLI 648

The following BLAST results are available for this feature:
BLAST of CcUC04G061080 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038877032.11.3e-0456.36probable linoleate 9S-lipoxygenase 5 isoform X1 [Benincasa hispida][more]
XP_004139173.11.3e-0456.36probable linoleate 9S-lipoxygenase 5 isoform X2 [Cucumis sativus] >KAE8651603.1 ... [more]
XP_038877033.11.3e-0456.36probable linoleate 9S-lipoxygenase 5 isoform X2 [Benincasa hispida][more]
XP_011648826.11.3e-0456.36probable linoleate 9S-lipoxygenase 5 isoform X1 [Cucumis sativus][more]
KAA0047988.12.8e-0454.55putative linoleate 9S-lipoxygenase 5 [Cucumis melo var. makuwa][more]
BLAST of CcUC04G061080 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q431914.5e-0554.35Probable linoleate 9S-lipoxygenase 5 OS=Solanum tuberosum OX=4113 GN=LOX1.5 PE=2... [more]
Q431902.2e-0447.83Probable linoleate 9S-lipoxygenase 4 OS=Solanum tuberosum OX=4113 GN=LOX1.4 PE=2... [more]
Q412382.2e-0447.83Linoleate 9S-lipoxygenase 6 (Fragment) OS=Solanum tuberosum OX=4113 GN=LOX1.6 PE... [more]
Q9LUW02.2e-0441.82Linoleate 9S-lipoxygenase 5 OS=Arabidopsis thaliana OX=3702 GN=LOX5 PE=1 SV=2[more]
P384152.2e-0447.83Linoleate 9S-lipoxygenase A OS=Solanum lycopersicum OX=4081 GN=LOX1.1 PE=2 SV=1[more]
BLAST of CcUC04G061080 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TYE51.4e-0454.55Lipoxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00510 P... [more]
A0A803Q2I53.0e-0457.45Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A059B8063.9e-0454.55Lipoxygenase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_H04495 PE=3 SV=1[more]
A0A7J7CX315.2e-0450.91Lipoxygenase OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G01534 PE=3 SV=1[more]
A0A058ZUF98.8e-0468.42Lipoxygenase OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_L01433 PE=3 SV=1[more]
BLAST of CcUC04G061080 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G22400.11.6e-0541.82PLAT/LH2 domain-containing lipoxygenase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013819Lipoxygenase, C-terminalPFAMPF00305Lipoxygenasecoord: 27..73
e-value: 4.1E-7
score: 28.9

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CcUC04G061080.1CcUC04G061080.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046394 carboxylic acid biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0034440 lipid oxidation
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen